Literature DB >> 27535372

Is realistic neuronal modeling realistic?

Mara Almog1,2, Alon Korngreen3,2.   

Abstract

Scientific models are abstractions that aim to explain natural phenomena. A successful model shows how a complex phenomenon arises from relatively simple principles while preserving major physical or biological rules and predicting novel experiments. A model should not be a facsimile of reality; it is an aid for understanding it. Contrary to this basic premise, with the 21st century has come a surge in computational efforts to model biological processes in great detail. Here we discuss the oxymoronic, realistic modeling of single neurons. This rapidly advancing field is driven by the discovery that some neurons don't merely sum their inputs and fire if the sum exceeds some threshold. Thus researchers have asked what are the computational abilities of single neurons and attempted to give answers using realistic models. We briefly review the state of the art of compartmental modeling highlighting recent progress and intrinsic flaws. We then attempt to address two fundamental questions. Practically, can we realistically model single neurons? Philosophically, should we realistically model single neurons? We use layer 5 neocortical pyramidal neurons as a test case to examine these issues. We subject three publically available models of layer 5 pyramidal neurons to three simple computational challenges. Based on their performance and a partial survey of published models, we conclude that current compartmental models are ad hoc, unrealistic models functioning poorly once they are stretched beyond the specific problems for which they were designed. We then attempt to plot possible paths for generating realistic single neuron models.
Copyright © 2016 the American Physiological Society.

Keywords:  cable theory; channel kinetics; compartmental model; dendrites; ion channel

Mesh:

Year:  2016        PMID: 27535372      PMCID: PMC5102320          DOI: 10.1152/jn.00360.2016

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  305 in total

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5.  The spatio-temporal characteristics of action potential initiation in layer 5 pyramidal neurons: a voltage imaging study.

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Journal:  J Physiol       Date:  2011-06-13       Impact factor: 5.182

6.  Determinants of voltage attenuation in neocortical pyramidal neuron dendrites.

Authors:  G Stuart; N Spruston
Journal:  J Neurosci       Date:  1998-05-15       Impact factor: 6.167

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9.  Stochastic ion channel gating in dendritic neurons: morphology dependence and probabilistic synaptic activation of dendritic spikes.

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  25 in total

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Review 8.  Human brain atlasing: past, present and future.

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9.  A biophysical modelling platform of the cochlear nucleus and other auditory circuits: From channels to networks.

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