| Literature DB >> 35466093 |
Paola Rampelotto Ziani1,2, Jacson Gabriel Feiten1,3, Jéferson Ferraz Goularte, Rafael Colombo1,4, Bárbara Antqueviezc1, Luiza Paul Géa5, Adriane Ribeiro Rosa1,2,3.
Abstract
Bipolar disorder (BD) is one of the most disabling diseases characterized by severe humor fluctuation. It is accompanied by cognitive and functional impairment in addiction to high suicide rates. BD is often underdiagnosed and treated incorrectly because many of the reported symptoms are not exclusive to the disorder. Once the diagnosis is exclusively clinical, it is not possible to state precisely. From that, proteomic approaches were used to identify, in a large scale, all proteins involved in cellular or tissue processes. This review aggregate data from blood proteomes, by using protein association network, of subjects with BD and healthy controls to suggest dysfunctional molecular pathways involved in disease. Original articles containing proteomic analysis were searched in PubMed. Seven studies were selected and data were extracted for posterior analysis. A protein-protein interaction network was created by STRING database. A final set of proteins in this network were employed as input in ClueGO and, the main biological process was visualized using R package pathview. The analysis revealed proteins associated with many biological processes, including growth and endocrine regulation, iron transportation, protease inhibition, protection against pathogens and cholesterol transport. Moreover, pathway analysis indicated the association of uncovered proteins with two main metabolic pathways: complement system and coagulation cascade. Thus, a better understanding on the pathophysiology of psychiatric disorders and the identification of potential biomarker candidates are essential to improve diagnostic, prognostic and design pharmacological strategies.Entities:
Keywords: Biomarkers; Bipolar disorder; Blood; Proteomics; Systems biology
Year: 2022 PMID: 35466093 PMCID: PMC9048014 DOI: 10.9758/cpn.2022.20.2.211
Source DB: PubMed Journal: Clin Psychopharmacol Neurosci ISSN: 1738-1088 Impact factor: 3.731
Fig. 1Flowchart of eligibility criteria and research information.
Fig. 2Systems biology protocol. (A) A list of proteins differentially expressed was organized. (B) The list was imported to R 3.6.1 and the networks were created. (C) Based on the networks generated, the neighbors of the proteins differentially expressed found by three authors or more were selected. (D) This set of proteins was used as input to ClueGO. (E) The main biological process was visualized using the pathview R package as well as differentially expressed proteins. APOA-1, apolipoprotein A-1; A2M, alpha-2-macroglobulin; C3, third component of complement; IGF-1, insulin growth factor-1; TF, transferrin; KEGG, Kyoto Encyclopedia of Genes and Genomes.
Proteomic studies identifying BD peripheral biomarkers
| Author | Blood fraction | Subjects | Sample size | Proteomic technique | Results |
|---|---|---|---|---|---|
| Herberth | Serum | BD | 32 | LC-MS | 22 differentially expressed analytes compared HC |
| Alsaif | Serum | BD | 24 | Multiplex | 6 (serum) and 10 (plasma) differentially expressed proteins in BD compared to HC |
| Haenisch | Plasma | BD | 17 | Multiplex | 26 differentially expressed analytes compared HC |
| Chen | Plasma | BD | 20 | 2-DE/MS | 3 differentially expressed proteins in BD compared to HC |
| Song | Plasma | Euthymic | 10 | 2-DE/MS | 32 differentially expressed proteins in BD compared to HC; |
| de Jesus | Serum | BD | 14 | LC-MS/MS | 6 differentially expressed proteins in BD compared to HC |
| Ren | Plasma | BD | 30 | LC-MS/MS | 54 differentially expressed proteins in BD compared to HC |
BD, bipolar disorder; HC, healthy control; HCFN, non familiar healthy control; HCF, familiar healthy control; LC, liquid chromatography; MS, mass spectrometry; 2-DE, two-dimensional electrophoresis.
Summary of diagnostic biomarkers in BD
| Author | Groups | Up-regulated | Down-regulated |
|---|---|---|---|
| Herberth | BD × HC | C-C motif chemokine 16; tumor necrosis factor receptor superfamily member 5; CD40 ligand; connective tissue growth factor; endothelin-1; pro- epidermal growth factor; tumor necrosis factor ligand superfamily member 6; macrophage migration inhibitory factor; lymphotactin; luteinizing hormone; progesterone; testosterone; glutathione S-transferase A1; insulin-like growth factor-binding protein 2 | Apolipoprotein A-I; C-C motif chemokine 26; immunoglobulin A; immunoglobulin M; interleukin-13; kit ligand; tumor necrosis factor; apolipoprotein- C-III |
| Alsaif | BD × HC (plasma) | Lipoprotein-A; adrenocorticotropic hormone | Alpha-2-macroglobulin; macrophage migration inhibitory factor; macro-phage inflammatory protein-3a; sex hormone-binding globulin; tenascin-C; apolipoprotein A; insulin-like growth factor I; monocyte chemotactic protein-4; platelet-derived growth factor subunit B; stem cell factor; superoxide dismutase; transferrin |
| Alsaif | BD × HC (serum) | Lipoprotein-A; macrophage migration inhibitory factor; insulin-like growth factor I; stem cell factor; superoxide dismutase | Alpha-2-macroglobulin; macrophage inflammatory protein-3a; sex hormone- binding globulin; tenascin-C; apolipoprotein A; monocyte chemotactic protein-4; platelet-derived growth factor subunit B; transferrin |
| Haenisch | BD × HC | S100 calcium binding protein B; interferon gamma induced protein 10; clusterin; complement C3; granulocyte colony stimulating factor; osteo-pontin; prostatic acid phosphatase; TIMP-1; C-peptide; hepatocyte growth factor; insulin; insulin like growth factor I; intact proinsulin; total proin-sulin; vascular endothelial growth factor; peptide YY; chromogranin A; alpha 1 microglobulin; beta 2 microglobulin; matrix metalloproteinase 7; vitamin K dependent protein S; cystatin-C; apolipoprotein H | Apolipoprotein AI; myoglobin; sex hormone binding globulin |
| Chen | BD × HC | - | Complement component 3 isoform CRA_a; C4b-binding protein alpha chain; complement factor 1 |
| Song | BD × HC | Haptoglobin; apolipoprotein L1; afamin; pigment epithelium-derived factor; complement C4-B; vitamin D-binding protein; complement C4A3; carboxypeptidase B2; serotransferrin; fibrinogen beta chain; fibrinogen gamma chain; complement C3; hemopexin; keratin; complement sub-component subunit C; complement factor I heavy chain; mannose- binding protein C; complement C4 gamma chain | Apolipoprotein A-I; carboxypeptidase N catalytic chain; N-acetyl-muramoyl-L-alanine amidase; inter-alpha-trypsin inhibitor heavy chain H1; serum amyloid P-component; inter-alpha-trypsin inhibitor heavy chain H4; CD5 antigen-like; C4b-binding protein alpha chain; carbonic anhydrase 1; alpha-2-macroglobulin; complement factor H-related protein 1; complement C1r subcomponent; fibrinogen alpha chain |
| de Jesus | BD × HC | Albumin; apolipoprotein A-I | Complement C4-A; alpha-1-antitrypsin; apolipoprotein E; transferrin |
| Ren | BD × HC | Immunoblobulin light chain; full-length cDNA clone; immunoglobulin J chain; C4b-binding protein beta chain; hemoglobin beta subunit variant; myosin-reactive immunoglobulin heavy chain variable region; catalase; mutant hemoglobin alpha 2 globin chain; peroxiredoxin-2; carbonic anhydrase 1; superoxide dismutase; cDNA FLJ57106; haptoglobin; hemo-globin beta; alpha-2-macroglobulin; flavin reductase; Ig heavy chain variable region; beta globin; Ig kappa chain V-IV region Len; cDNA FLJ35079; insulin growth factor 1; IGL@; coagulation factor V; hemo-globin beta chain; protein S100; peroxiredoxin-1; alpha-1-acid glycoprotein 1; apolipoprotein A-I; anti-(ED-B) scFV; alpha-hemoglobin-stabilizing protein; delta-aminolevulinic acid dehydratase; immunglobulin heavy chain variable region; ATP-binding cassette sub-family B member 9; epididymis secretory protein; selenium-binding protein 1 | cDNA FLJ60397; brain acid soluble protein 1; Rab GDP dissociation inhibitor alpha; secreted phosphoprotein 24; amyloid beta A4 protein; endoglin; cDNA, FLJ95014; cathepsin S; thyroid peroxidase; ATP syn-thase subunit alpha; eukaryotic translation elongation factor 1 alpha; suprabasin; protein crumbs homolog 1; platelet endothelial cell adhe-sion molecule; sulfhydryl oxidase; trans-Golgi network integral mem-brane protein 2; multimerin-1; platelet basic protein; keratin-associated protein |
BD, bipolar disorder; HC, healthy control.
Fig. 3Study-protein interaction network. The seven studies selected presented individual and shared proteins. Alsaif et al. [16] found a shared set of proteins between plasma and serum. The proteomics profile found by Song et al. [13] was very similar between different disease states and shared some proteins with the profile found by Ren et al. [20] and Chen et al. [10]. Alsaif presented results based on sample type (serum and plasma), meanwhile, Song stratifies studies based on different disease stages (depression, euthymia, and mania). The rest of the authors did not differentiate the disease stage. All studies, except Alsaif, found uniquely expressed proteins. One study (Herberth et al. [19]) showed 12 uniquely expressed proteins, therefore there were no proteins in common with other studies and it was not bound to the main network. BD, bipolar disorder.
Fig. 4Study-protein network analysis of differentially expressed proteins. Five proteins that presented significant change in expression between bipolar disorder and healthy control samples were included in the analysis. These network proteins are involved in growth regulation, endocrine system, iron transportation, protease inhibition, defense against pathogens and cholesterol transport. Song, Song et al. [13]; Chen, Chen et al. [10]; de Jesus, de Jesus et al. [17]; Haenisch, Haenisch et al. [18]; Alsaif, Alsaif et al. [16]; Ren, Ren et al. [20]. APOA-1, apolipoprotein A-1; A2M, alpha-2-macroglobulin; C3, third component of complement; IGF-1, insulin growth factor-1; BD, bipolar disorder.
Fig. 5Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. Complement and coagulation cascade (p-adj. Bonferroni = 1.0 × 10−13) were the two main signaling pathways involved in bipolar disorder biological processes. Grey squares represent differentially expressed proteins found by three or more authors. A2M forms a complex with PCI, alpha a1AT, alpha 2AP. This complex of proteins inhibits PC. Furthermore, alpha2AP and A2M complex inhibits plasmin activity. C3 is part of the alternative pathway and integrates this pathway with classical and lectin pathways. This figure can be visualized in more details here (https://www.kegg.jp/kegg-bin/highlight_pathway?scale=1.0&map=map04610&keyword= coagulation). A2M, alpha-2-macroglobulin; PCI, protein C inhibitor; a1AT, alpha-1-antitrypsin; α2AP, alpha-2-antiplasmin; C3, third component of complement.