| Literature DB >> 35464982 |
Shun Liu1, Chang-Ge Song1, Tai-Min Xu1, Xing Ji1, Dong-Mei Wu2, Bao-Kai Cui1.
Abstract
Fomitopsis is a worldwide brown-rot fungal genus of Polyporales, which grows on different gymnosperm and angiosperm trees and has important ecological functions and economic values. In this study, species diversity, phylogenetic relationships, and ecological habits of Fomitopsis were investigated. A total of 195 specimens from 24 countries representing 29 species of Fomitopsis were studied. Based on the morphological characters and phylogenetic evidence of DNA sequences including the internal transcribed spacer (ITS) regions, the large subunit of nuclear ribosomal RNA gene (nLSU), the small subunit of nuclear ribosomal RNA gene (nSSU), the small subunit of mitochondrial rRNA gene (mtSSU), the translation elongation factor 1-α gene (TEF), and the second subunit of RNA polymerase II (RPB2), 30 species are accepted in Fomitopsis, including four new species: F. resupinata, F. srilankensis, F. submeliae and F. yimengensis. Illustrated descriptions of the novel species and the geographical locations of the Fomitopsis species are provided.Entities:
Keywords: brown-rot fungi; distribution areas; multi-gene phylogeny; new species; polypore
Year: 2022 PMID: 35464982 PMCID: PMC9019680 DOI: 10.3389/fmicb.2022.859411
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 6.064
A list of species, specimens, and GenBank accession number of sequences used for phylogenetic analyses in this study.
| Species name | Sample no. | Locality | GenBank accessions | |||||
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| ITS | nLSU | mtSSU | nSSU | RPB2 | TEF | |||
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| Dai 12755 | United States |
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| Dai 14850 | Poland |
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| Cui 8310 | China |
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| Cui 9743 | China |
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| Miettinen 9166.1 | Indonesia |
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| JV 0909/37 | Czech Republic |
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| Cui 7258 | China |
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| Dai 13660 | China |
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| JV 0906/15-J | United States |
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| Cui 10125 | China |
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| Cui 10124 | China |
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| Dai 12659 | Finland |
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| Cui 8575 | China |
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| VS 3315 | Russia |
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| – | – | – | – |
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| LY BR 3450 | France |
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| – | – | – | – |
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| X 1372 | Finland |
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| – | – | – | – |
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| Cui 10521 | China |
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| – | – |
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| Cui 10532 holotype | China |
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| – |
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| Dai 22110 | China |
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| Dai 22116 holotype | China |
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| – | – |
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| Cui 17121 | China |
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| Cui 10756 | China |
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| Dai 11449 | China |
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| X 1207 | China |
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| – | – | – | – |
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| X 1059 | China |
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| – | – | – | – |
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| Cui 6239 | China |
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| Dai 9611 holotype | China |
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| Cui 16871 holotype | Puerto Rico |
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| Overholts 4215 | United States |
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| – | – |
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| O 10796 | Venezuela |
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| Cui 16594 | Australia |
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| Cui 16598 holotype | Australia |
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| Cui 17170 holotype | China |
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| Cui 17171 | China |
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| O 10808 | Australia |
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| – |
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| Cui 16259 holotype | China |
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| Cui 17056 | China |
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| Dai 6614 | China |
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| O 10811 | Italy |
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| – |
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| Cui 16437 holotype | Vietnam |
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| Cui 16466 | Vietnam |
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| Cui 11304 holotype | China |
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| – | – |
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| Cui 11288 | China |
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| – |
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| Roberts GA863 | United Kingdom |
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| – |
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| Ryvarden 16893 | Unknown |
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| DR-366 | United States |
| – | – | – |
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| JAG-08-19 | United States |
| – | – | – |
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| Man 09 | Brazil |
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| – | – | – | – |
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| JV 0509/52-X | China |
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| ss 5 | Canada |
| – | – | – |
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| ss 7 | Canada |
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| Cui 18217 | Malaysia |
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| IRET 22 | Gabon |
| – | – | – | – | – |
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| LDCMY 21 | India |
| – | – | – | – | – |
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| Cui 7597 | China |
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| Cui 7615 | China |
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| LT 319 | Estonia |
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| AT Fp 1 | Sweden |
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| Cui 6697 |
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| Dai 10819 holotype |
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| AS 1496 | Brazil |
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| AS 1566 | Brazil |
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| JEH-144 | United States |
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| JEH-150 holotype | United States |
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| Dai 19528 holotype |
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| Dai 19539 |
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| Dai 10035 |
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| – |
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| Dai 18324 |
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| – |
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| Dai 9719 |
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| – |
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| Dai 18559 holotype |
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| Cui 6305 |
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| Cui 9836 holotype | China |
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| – |
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| Dai 11206 | China |
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| – |
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| Dai 18566 | China |
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| – |
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| Cui 10578 holotype | China |
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| Cui 10140 | China |
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| Cui 16821 holotype | China |
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| – |
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| Cui 16823 | China |
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| Cui 5027 holotype |
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| Cui 5031 |
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| Cui 5111 |
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| Cui 12388 | China |
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| Cui 10404 | China |
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| Dai 11156 | China |
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| JV 1509/5 | Czech Republic |
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| Dai 7626 | China |
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| Cui 9706 | China |
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| 4638 | France |
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| JV 0509/62 | United States |
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| Cui 9888 | China |
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| Cui 10348 | China |
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| Cui 10520 | China |
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| Dai 11887 | China |
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| Ryvarden 37603 | Venezuela |
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| Schigel 5193 | Australia |
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| Dai 16894 | China |
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| Cui 5481 | China |
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| Yuan 6304 | China |
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| – |
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| Rajchenberg 10661 | Argentina |
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| 03010/1a | United States |
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| Dai 17104 | Uzbekistan |
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| Dai 17105 | Uzbekistan |
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| Cui 10919 | China |
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*Newly generated sequences for this study. New species are shown in bold.
FIGURE 1Maximum likelihood tree illustrating the phylogeny of Fomitopsis and its related genera in the antrodia clade based on the combined sequences dataset of ITS + nLSU + nSSU + mtSSU + RPB2 + TEF. Branches are labeled with maximum likelihood bootstrap higher than 50%, parsimony bootstrap proportions higher than 50% and Bayesian posterior probabilities more than 0.90, respectively. Bold names = New species.
FIGURE 2Basidiomata of Fomitopsis species. (A) F. resupinata; (B,C) F. srilankensis; (D) F. submeliae; (E,F) F. yimengensis (scale bars: b, f = 1.5 cm; a, c, e = 2 cm; d = 3 cm).
FIGURE 3Microscopic structures of Fomitopsis resupinata (Holotype, Dai 10819). (A) Basidiospores. (B) Basidia and basidioles. (C) Cystidioles. (D) Hyphae from trama. (E) Hyphae from context. Drawings by: Shun Liu.
FIGURE 4Microscopic structures of Fomitopsis srilankensis (Holotype, Dai 19539). (A) Basidiospores. (B) Basidia and basidioles. (C) Cystidioles. (D) Hyphae from trama. (E) Hyphae from context. Drawings by: Shun Liu.
FIGURE 5Microscopic structures of Fomitopsis submeliae (Holotype, Dai 18559). (A) Basidiospores. (B) Basidia and basidioles. (C) Cystidioles. (D) Hyphae from trama. (E) Hyphae from context. Drawings by: Shun Liu.
FIGURE 6Microscopic structures of Fomitopsis yimengensis (Holotype, Cui 5027). (A) Basidiospores. (B) Basidia and basidioles. (C) Cystidioles. (D) Hyphae from trama. (E) Hyphae from context. Drawings by: Shun Liu.
The main ecological habits of Fomitopsis with an emphasis on distribution areas, host trees, and fruiting body types.
| Species | Type locality | Distribution in the world | Distribution in China | Geographical elements | Host | Fruiting body types | References |
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| China | Asia (China) | Yunnan (plateau humid climate) | Endemic to China | Gymnosperm ( | Pileate |
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| China | Asia (China) | Hainan (tropical monsoon climate) | Endemic to China | Angiosperm (bamboo) | Resupinate to effused-reflexed or pileate |
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| Norway | Asia (China, Japan, Korea), Europe (Austria, Belgium, Czech Republic, Finland, Germany, Italy, Lithuania, Norway, Russia, Switzerland, United Kingdom), North America (Canada, United States) | Beijing, Heilongjiang, Inner Mongolia, Jilin, Shaanxi, Sichuan, Xizang, Xinjiang, Yunnan (temperate to subtropical) | Cosmopolitan | Angiosperm ( | Pileate | |
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| Russia | Asia (China), Europe (Russia) | Beijing (temperate continental monsoon climate) | East Asia-Europe | Angiosperm ( | Pileate to effused-reflexed |
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| China | Asia (China) | Hainan (tropical monsoon climate) | Endemic to China | Angiosperm ( | Resupinate to effused-reflexed or pileate |
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| Puerto Rico | North America (Puerto Rico) | North America | Angiosperm (undetermined) | Pileate |
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| United States | North America (United States), South America (Venezuela) | North America-South America | Angiosperm ( | Pileate |
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| Australia | Oceania (Australia) | Oceania | Angiosperm ( | Pileate to effused-reflexed |
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| China | Asia (China) | Hubei (subtropical) | Endemic to China | Gymnosperm ( | Pileate |
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| New Zealand | Oceania (Australia, New Zealand, Samoa) | Oceania | Angiosperm ( | Pileate |
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| China | Asia (China) | Yunnan (temperate to plateau continental climate) | Endemic to China | Gymnosperm ( | Pileate |
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| Portugal | Asia (China), Europe (Austria, France, Italy, Portugal) | Beijing (temperate continental monsoon climate) | Europe | Angiosperm ( | Pileate | |
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| Vietnam | Asia (Vietnam) | Southeast Asia | Gymnosperm ( | Pileate |
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| China | Asia (China) | Fujian, Guandong (subtropical) | Endemic to China | Gymnosperm ( | Effused-reflexed to pileate |
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| United States | Europe (United Kingdom), North America (United States) | Europe-North America | Angiosperm ( | Pileate |
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| Canada | North America (Canada, United States) | North America | Angiosperm ( | Pileate |
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| Brazil | Asia (China, Japan), South America (Brazil), North America (Guatemala, United States) | Guangxi, Sichuan (alpine plateau to subtropical) | Cosmopolitan | Angiosperm ( | Pileate |
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| Canada | North America (Canada, United States) | North America | Angiosperm ( | Pileate | ||
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| Philippines | Asia (Indonesia, Malaysia, Philippines, Thailand) | Southeast Asia | Angiosperm ( | Effused-reflexed to pileate | ||
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| United States | Asia (China, Japan), North America (United States) | Beijing, Hubei, Guangdong, Jilin, Sichuan (temperate to subtropical) | East Asia-North America | Angiosperm ( | Effused-reflexed to pileate | |
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| Sweden | Europe (Belgium, Czech Republic, Estonia, Finland, France, Italy, Poland, Russia, Sweden) | Europe | Angiosperm (undetermined), Gymnosperm ( | Pileate | ||
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| Brazil | North America (United States), South America (Venezuela) | South America | Angiosperm (undetermined) | Pileate, resupinate to effused-reflexed |
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| United States | North America (United States) | North America | Angiosperm (undetermined), Gymnosperm ( | Pileate |
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| China | Asia (China) | Heilongjiang, Inner Mongolia, Jilin (boreal to temperate) | Endemic to China | Gymnosperm ( | Pileate |
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| China | Asia (China, Malaysia, Singapore, Vietnam) | Fujian, Guangdong, Guangxi, Hainan, Yunnan, Zhejiang (subtropical) | East Asia | Angiosperm ( | Resupinate to effused-reflexed or pileate | |
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| China | Asia (China) | Xinjiang (alpine plateau to continental climate) | Endemic to China | Gymnosperm ( | Effused-reflexed to pileate |
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New species are shown in bold.
FIGURE 7The geographical locations of the Fomitopsis species distributed in the world.
FIGURE 8The geographical locations of the Fomitopsis species distributed in China.