| Literature DB >> 33841369 |
Shun Liu1,2, Mei-Ling Han3, Tai-Min Xu1,2, Yan Wang1,2, Dong-Mei Wu4, Bao-Kai Cui1,2.
Abstract
Fomitopsis pinicola is a common brown-rot fungal species found in northern hemisphere. It grows on many different gymnosperm and angiosperm trees. Recent studies show that it is a species complex; three species from North America and one species from Europe have been recognized in this complex. In the current study, six new species in the Fomitopsis pinicola complex were discovered from East Asia, based on morphological characters and phylogenetic analyses inferred from the sequence data of the internal transcribed spacer (ITS) regions, the second subunit of RNA polymerase II (RPB2), and the translation elongation factor 1-α gene (TEF). Detailed descriptions of the six new species are provided. Our results also indicates that species of the F. pinicola complex from East Asia usually have limited distribution areas and host specialization.Entities:
Keywords: brown-rot fungi; host specialization; multi-gene phylogeny; polypore; species complex
Year: 2021 PMID: 33841369 PMCID: PMC8034269 DOI: 10.3389/fmicb.2021.644979
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
A list of species, specimens, and GenBank accession numbers of sequences used in this study.
| Species name | Sample no. | Locality | GenBank accessions | ||
| ITS | RPB2 | TEF | |||
| Cui 9743 | China | ||||
| Yuan 1106 | China | ||||
| Dai 12152 | Czechia | ||||
| Dai 2260 | Sweden | ||||
| Cui 10532 | China | ||||
| Cui 10521 | China | ||||
| Cui 10756 | China | ||||
| Dai 11449 | China | ||||
| Cui 6239 | China | ||||
| Dai 9611 | China | ||||
| Overholts 4215 | United States | — | — | ||
| O 10796 | Venezuela | ||||
| Cui 16259 | China | ||||
| Cui 17056 | China | ||||
| Cui 16437 | Vietnam | ||||
| Cui 16466 | Vietnam | ||||
| Cui 2848 | China | ||||
| Cui 9058 | China | ||||
| Cui 11288 | China | ||||
| Cui 11304 | China | ||||
| Dai 10035 | China | — | |||
| Ryvarden 16893 | Unknown | ||||
| AFTOL ID 770 | United States | ||||
| DR 366 | United States | ||||
| JAG 08 19 | United States | ||||
| JEH 78 | Canada | ||||
| Tuomo Niemelä 2530 | Canada | ||||
| Teuvo Ahti 60351 | Canada | ||||
| OM 18782 | United States | ||||
| Spirin 8367 | United States | ||||
| HHB 19692 | United States | ||||
| HHB 19670 | United States | ||||
| JEH 38 | United States | ||||
| LT 18 | United States | ||||
| OM 18568 | United States | ||||
| OM 18673 | United States | ||||
| Spirin 8165 | United States | ||||
| FCUG 2056 | Sweden | ||||
| HK 19330 | Russia | ||||
| LT 323 | Estonia | ||||
| LT 319 | Estonia | ||||
| AT Fp 1 | Sweden | ||||
| AT Fp 2 | Sweden | ||||
| FP 105881 R | United States | ||||
| JEH 144 | United States | ||||
| JEH 150 | United States | ||||
| JV 1209/61 J | United States | ||||
| Inkeri Ahonen 58 | United States | ||||
| Cui 9836 | China | ||||
| Cui 9819 | China | ||||
| Dai 11101 | China | ||||
| Dai 11206 | China | ||||
| Dai 13480 | China | ||||
| Yuan 4912 | China | ||||
| Cui 10578 | China | ||||
| Cui 10140 | China | ||||
| Wei 1568 | China | ||||
| Wei 1473a | China | ||||
| Wei 1462a | China | ||||
| Cui 16821 | China | ||||
| Cui 16823 | China | ||||
| Cui 16825 | China | ||||
| Cui 16828 | China | ||||
| Cui 16830 | China | ||||
| Dai 13633 | China | ||||
| Cui 10404 | China | ||||
| JV 0509/62 | United States | ||||
| 4638 | France | ||||
| Cui 10520 | China | ||||
| Cui 10633 | China | ||||
| LR 14115 | Costa Rica | — | — | ||
| JV 0610/K9-Kout | Mexico | — | |||
| Cui 5481 | China | ||||
| Yuan 6304 | China | — | |||
FIGURE 1Maximum parsimony tree illustrating the phylogeny of the Fomitopsis pinicola complex based on the combined sequences dataset of ITS + RPB2 + TEF. Daedalea quercina served as the outgroup. Branches are labeled with maximum likelihood bootstrap higher than 50%, maximum parsimony bootstrap proportions higher than 50% and Bayesian posterior probabilities more than 0.95. Bold names = New species.
FIGURE 2Maximum parsimony tree illustrating the phylogeny of the Fomitopsis pinicola complex and related group based on the combined sequences dataset of ITS + RPB2 + TEF. Laetiporus zonatus served as the outgroup. Branches are labeled with maximum likelihood bootstrap higher than 50%, maximum parsimony bootstrap proportions higher than 50% and Bayesian posterior probabilities more than 0.95. Bold names = New species.
FIGURE 3Basidiocarps of the Fomitopsis pinicola complex species. (A,B) F. abieticola; (C,D) F. hengduanensis; (E,F) F. kesiyae; (G,H) F. massoniana; (I,J) F. subpinicola; (K,L) F. tianshanensis. Bars: A,B,D,E,F = 2 cm; G,H = 1 cm; C,I,J = 3 cm; K,L = 5 cm.
FIGURE 4Microscopic structures of Fomitopsis abieticola (drawn from the holotype). (A) Basidiospores; (B) Basidia and basidioles; (C) Cystidioles; (D) Hyphae from trama; (E) Hyphae from context. Bars: A–E = 10 μm.
FIGURE 5Microscopic structures of Fomitopsis hengduanensis (drawn from the holotype). (A) Basidiospores; (B) Basidia and basidioles; (C) Cystidioles; (D) Hyphae from trama; (E) Hyphae from context. Bars: A–E = 10 μm.
FIGURE 6Microscopic structures of Fomitopsis kesiyae (drawn from the holotype). (A) Basidiospores; (B) Basidia and basidioles; (C) Cystidioles; (D) Hyphae from trama; (E) Hyphae from context. Bars: A–E = 10 μm.
FIGURE 7Microscopic structures of Fomitopsis massoniana (drawn from the holotype). (A) Basidiospores; (B) Basidia and basidioles; (C) Cystidioles; (D) Hyphae from trama; (E) Hyphae from context. Bars: A–E = 10 μm.
FIGURE 8Microscopic structures of Fomitopsis subpinicola (drawn from the holotype). (A) Basidiospores; (B) Basidia and basidioles; (C) Cystidioles; (D) Hyphae from trama; (E) Hyphae from context. Bars: A–E = 10 μm.
FIGURE 9Microscopic structures of Fomitopsis tianshanensis (drawn from the holotype). (A) Basidiospores; (B) Basidia and basidioles; (C) Cystidioles; (D) Hyphae from trama; (E) Hyphae from context. Bars: A–E = 10 μm.
A comparison of species in the Fomitopsis pinicola complex.
| Species | Distribution | Basidio- | Pileal surface | Host | Pores (per mm) | Cystidia (μm) | Basidiospores | References | |
| carps | when fresh | L × W (μm) | Q = L/W | ||||||
| Southwestern China | Annual to perennial; pileate | Cream to pinkish buff | 2–4 | 17.5–50.2 × 4.3–9.5 | 7–9 × 4–5 | 1.83–1.89 | This study | ||
| High altitude areas of the Hengduan Mountains of southwestern China | Annual to perennial; pileate | Pale dark gray to reddish brown at base and cream to flesh-pink toward the margin | 6–8 | 13.2–36.5 × 2.5–5.4 | 5.2–6 × 3.2–3.6 | 1.57–1.63 | This study | ||
| Tropical areas of Vietnam | Annual; pileate | Buff yellow to orange-yellow buff | 6–8 | 11.5–30.4 × 2.6–6 | 4.8–5.3 × 3–3.5 | 1.60–1.65 | This study | ||
| Southeastern China | Annual; effused-reflexed to pileate | Buff-yellow to apricot-orange | 5–7 | 14.8–36 × 3.8–6 | 6.2–7.3 × 3.3–4 | 1.85–1.9 | This study | ||
| Canada, northern United States | Perennial; pileate | Brownish orange to black at base and pale orange to grayish orange toward the margin | 3–5 | 16–35 × 3–6.5 | 5.8–6.6 × 3.4–4 | 1.7–1.9 | |||
| Canada, northern United States | Perennial; pileate | Brownish gray to grayish brown at base and orange White to pale orange toward the margin | 4–5 | 20–40 × 4–6.5 | 5.1–5.9 × 3.6–4 | 1.3–1.4 | |||
| Europe | Perennial; pileate | Brownish orange to black at base and buff-yellow to cinnamon toward the margin | Mostly on | 4–6 | 18–60 × 3–9 | 6–9 × 3–4.5 | 1.8–2.2 | ||
| Western and southwestern United States | Perennial; effused-reflexed to pileate | Grayish orange to olive brown at base and grayish orange to grayish yellow toward the margin | 3–4 | 16–30 × 3–8 | 5.7–6.7 × 3.7–4.2 | 1.5–1.6 | |||
| Northeastern China | Annual; pileate | Apricot-orange, scarlet to fuscous | Mostly on | 6–8 | 14.5–34.6 × 3.2–7.2 | 4.3–5.5 × 2.7–3.3 | 1.65–1.69 | This study | |
| Tianshan Mountains of northwestern China | Annual to perennial, effused-reflexed to pileate | Dark bluish gray to yellowish brown | 1–3 | 15.5–44 × 3.3–6.5 | 6.3–7 × 3.2–3.8 | 1.9–1.96 | This study | ||
| 1. | Distribution in East Asia | 2 |
| 1. | Distribution in North America or Europe | 7 |
| 2. | Pores < 5 per mm | 3 |
| 2. | Pores 5–8 per mm | 4 |
| 3. | Basidiospores oblong-ellipsoid to ellipsoid, 7–9 × 4–5 μm | |
| 3. | Basidiospores oblong-ellipsoid, 6.3–7 × 3.2–3.8 μm | |
| 4. | Distribution in tropical areas | |
| 4. | Distribution in temperate areas | 5 |
| 5. | Basidiocarps annual to perennial; pileal surface cream to flesh-pink toward the margin when fresh | |
| 5. | Basidiocarps annual; pileal surface white to cream toward the margin when fresh | 6 |
| 6. | Basidiospores oblong-ellipsoid, 6.2–7.3 × 3.3–4 μm | |
| 6. | Basidiospores oblong-ellipsoid to ellipsoid, 4.3–5.5 × 2.7–3.3 μm | |
| 7. | Pilei never with reddish brown band | |
| 7. | Pilei with reddish brown band | 8 |
| 8. | Distribution in Europe; basidia < 20 μm long | |
| 8. | Distribution in North America; basidia > 20 μm long | 9 |
| 9. | Basidiospores ellipsoid to cylindrical, Q = 1.6–1.9 | |
| 9. | Basidiospores ellipsoid to broadly cylindrical, Q = 1.5–1.6 |