| Literature DB >> 35458782 |
Marcos Juanes1, Rizalina Tama Saragi1, Cristóbal Pérez1, Luca Evangelisti2, Lourdes Enríquez3, Martín Jaraíz3, Alberto Lesarri1.
Abstract
Weakly-bound intermolecular clusters constitute reductionist physical models for non-covalent interactions. Here we report the observation of the monomer, the dimer and the monohydrate of 2-adamantanol, a secondary alcohol with a bulky ten-carbon aliphatic skeleton. The molecular species were generated in a supersonic jet expansion and characterized using broadband chirped-pulse microwave spectroscopy in the 2-8 GHz frequency region. Two different gauche-gauche O-H···O hydrogen-bonded isomers were observed for the dimer of 2-adamantanol, while a single isomer was observed for the monomer and the monohydrate. The experimental rotational parameters were compared with molecular orbital calculations using density functional theory (B3LYP-D3(BJ), B2PLYP-D3(BJ), CAM-B3LYP-D3(BJ), ωB97XD), additionally providing energetic and electron density characterization. The shallow potential energy surface makes the dimer an interesting case study to benchmark dispersion-corrected computational methods and conformational search procedures.Entities:
Keywords: chiral recognition; hydrogen bonding; jet spectroscopy; non-covalent interactions; rotational spectroscopy; transient chirality
Mesh:
Substances:
Year: 2022 PMID: 35458782 PMCID: PMC9030514 DOI: 10.3390/molecules27082584
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.927
Scheme 1Adamantane (left), 1-adamantanol (center) and 2-adamantanol (right).
Rotational parameters for the 2-adamantanol monomer.
| Experiment | Theory | ||
|---|---|---|---|
| G |
|
| |
| 1680.6888(30) d | 1691.9 | 1689.5 | |
| 1197.8532(20) | 1204.5 | 1197.5 | |
| 1195.3429(18) | 1202.3 | 1192.6 | |
|
| −0.990(4) | −0.991 | −0.980 |
| [ 0.] e | 0.0322 | 0.0310 | |
| 0.280(89) | 0.0303 | 0.0299 | |
| −0.204(61) | −0.0094 | −0.0080 | |
| [ 0.] | 0.0005 | 0.0010 | |
| [ 0.] | 0.0000 | 0.0006 | |
| | | 0.48 | 1.75 | |
| | | 0.93 | 0.72 | |
| | | 0.96 | 0.00 | |
| Δ | 0.00 | 2.75 | |
| Δ | 0.00 | 2.47 | |
|
| 25 | ||
| 7.5 | |||
a Rotational constants (A, B, C), Ray’s asymmetry parameter (κ = (2B–A–C)/(A–C)), Watson’s S-reduction centrifugal distortion constants (D, D, D, d1, d2) and electric dipole moments (μ, α = a, b, c). b Relative electronic energy (ΔE) with zero-point correction and Gibbs energy (ΔG, 298 K, 1 atm). c Number of transitions (N) and rms deviation (σ) of the fit. d Standard errors in parentheses in units of the last digit. e Parameters in square brackets were fixed to zero.
Figure 1The gauche (left, global minimum) and C plane-symmetric anti (right) conformations of 2-adamantanol.
Figure 2The water donor (Wd, first row) and water acceptor (Wa, second row) isomers of the 2-adamantanol-water monohydrate. The gauche and anti isomers are shown in the left and right columns, respectively. The O-H···O hydrogen bond is represented by a dotted line, together with the bonding distances predicted with B3LYP-D3(BJ)/def2-TZVP.
Rotational parameters for the 2-adamantanol monohydrate.
| Experiment | Theory | ||||
|---|---|---|---|---|---|
| 1511.8092(12) d | 1534.02 | 1524.14 | 1561.90 | 1481.44 | |
| 690.17508(75) | 684.93 | 694.66 | 654.28 | 738.62 | |
| 662.22912(72) | 659.66 | 666.48 | 635.52 | 696.20 | |
|
| −0.934(1) | −0.942 | −0.934 | −0.959 | −0.892 |
| 0.3846(79) | 0.2399 | −0.6722 | 0.1968 | 0.1643 | |
| 1.732(24) | 7.2570 | 0.1143 | 0.3920 | 2.9012 | |
| −1.721(36) | −7.2804 | −0.7008 | −0.3013 | −2.8952 | |
| −0.0366(65) | −0.0291 | −3.4672 | −0.0221 | −0.0178 | |
| 0.0067(13) | 0.0316 | −0.6228 | 0.0018 | 0.0177 | |
| | | 2.68 | 2.13 | 2.97 | 1.59 | |
| | | 1.21 | 1.20 | 1.24 | 0.84 | |
| | | 0.45 | 0.37 | 0.32 | 0.00 | |
| Δ | 0.00 | 1.98 | 3.25 | 6.34 | |
| Δ | 0.00 | 4.24 | 2.50 | 11.12 | |
| Δ | −25.31 | −27.11 | −22.34 | −21.51 | |
|
| 60 | ||||
| 10.6 | |||||
a Rotational constants (A, B, C), Ray’s asymmetry parameter (κ = (2B-A–C)/(A–C)), Watson’s S-reduction centrifugal distortion constants (D, D, D, d1, d2) and electric dipole moments (μ, α = a, b, c). b Relative electronic energies (ΔE) with zero-point correction, Gibbs energy (ΔG, 298K, 1 atm) and complexation energy (ΔEc). c Number of transitions (N) and rms deviation (σ) of the fit. d Standard errors in parentheses in units of the last digit.
Rotational parameters for the 2-adamantanol dimer.
| Experiment | Theory | |||||||
|---|---|---|---|---|---|---|---|---|
| Isomer A | Isomer B | Isomer 1-CS1 | Isomer 2-CS4 | Isomer 3 | Isomer 4 | Isomer 5 | Isomer 6 | |
| 701.117(17) e | 702.79(27) | 703.95 | 702.74 | 701.46 | 709.22 | 701.84 | 712.05 | |
| 138.34738(18) | 136.84142(21) | 140.03 | 139.42 | 141.81 | 139.83 | 145.30 | 138.32 | |
| 135.18537(18) | 133.80126(23) | 136.84 | 136.13 | 138.49 | 137.08 | 142.18 | 135.81 | |
|
| −0.9888(4) | −0.9893(8) | −0.989 | −0.988 | −0.988 | −0.990 | −0.989 | −0.991 |
| 0.00643(18) | 0.00471(23) | 0.0063 | 0.0045 | 0.0061 | 0.0046 | 0.0057 | 0.0065 | |
| −0.0169(54) | −0.0150 | 0.0142 | −0.0067 | 0.0037 | −0.0121 | −0.0222 | ||
| 0.0532 | 0.0104 | 0.0361 | 0.0203 | 0.0426 | 0.0808 | |||
| −0.0003 | −0.0002 | −0.0003 | −0.0002 | −0.0003 | −0.0004 | |||
| 0.0000 | 0.0000 | 0.0000 | 0.0000 | 0.0000 | 0.0000 | |||
| | | 3.12 | 2.66 | 2.61 | 2.60 | 2.33 | 2.86 | ||
| | | 0.23 | 0.31 | 0.73 | 0.24 | 1.11 | 0.46 | ||
| | | 1.10 | 1.21 | 0.79 | 1.84 | 2.07 | 1.83 | ||
|
| 124 | 88 | ||||||
| 13.2 | 10.5 | |||||||
| B3LYP-D3 c | ||||||||
| Δ | 0.00 | 0.00 | 1.00 | 0.69 | 1.09 | 0.83 | ||
| Δ | 0.97 | 0.00 | 2.03 | 1.68 | 3.18 | 0.69 | ||
| Δ | −35.77 | −35.61 | −36.86 | −35.19 | −34.64 | −34.48 | ||
| B2PLYP-D3 d | ||||||||
| Δ | 0.00 | 0.04 | 3.05 | 0.43 | 2.32 | 0.32 | ||
| Δ | −32.72 | −32.47 | −33.76 | −32.17 | −31.09 | −31.46 | ||
a Rotational constants (A, B, C), Ray’s asymmetry parameter (κ = (2B–A–C)/(A–C)), Watson’s S-reduction centrifugal distortion constants (D, D, D, d1, d2) and electric dipole moments (μ, α = a, b, c). b Number of transitions (N) and rms deviation (σ) of the fit. c B3LYP-D3(BJ) energetics: relative electronic energies (ΔE) with zero-point correction, Gibbs energy (ΔG, 298 K, 1 atm) and complexation energy (ΔEc). d B2PLYP-D3(BJ) energetics: relative electronic energies (ΔE) with B3LYP-D3(BJ) zero-point corrections and complexation energy (ΔEc). e Standard errors in parentheses in units of the last digit.
Figure 3The lowest-lying isomers of the 2-adamantanol dimer are mostly comprised of gauche-gauche isomers. The O-H···O hydrogen bond is represented by a dotted line, together with the bonding distances predicted with B3LYP-D3(BJ)/def2-TZVP.
Figure 4A view of the microwave spectrum of 2-adamantanol in the region 2–4 GHz (lower trace) and a 40 MHz expansion (upper trace) illustrating several typical rotational transitions corresponding to the two isomers of the 2-adamantanol dimer (isomer 1 in green; isomer 2 in orange).
Binding energy decomposition for the dimer and monohydrate of 2-adamantanol, and comparison with several alcohol and thiol dimers and the van der Waals dimer pyridine–methane. Clusters are ordered by interaction energy, which is decomposed into electrostatic (ΔEelec), inductive (multipole interactions/charge transfer, ΔEind), exchange repulsion (ΔEexch) and dispersion (ΔE) energy terms. The calculation used SAPT(2) + 3/aug-cc-pVDZ//B3LYP-D3(BJ)/def2-TZVP (all values in kJ mol−1).
| Cluster | Δ | Δ | Δ | Δ | Δ | Δ |
|---|---|---|---|---|---|---|
| (Benzyl alcohol)2 a | −58.7 [44.5%] k | −54.6 [41.4%] | −18.6 [14.1%] | 89.8 | −42.1 | |
| (Furfuryl alcohol)2 b | −61.7 [49.7%] | −21.5 [17.3%] | −41.0 [33.0%] | 85.7 | −38.5 | |
| (Benzyl mercaptan)2 c | −39.3 [34.4%] | −61.1 [53.6%] | −13.6 [12.0%] | 78.7 | −35.3 | |
| (2-Adamantanol)2 Isomer 1 d | −44.8 [46.6% ] | −16.2 [19.2%] | −35.2 [51.7%] | 63.3 | −32.9 | |
| (2-Adamantanol)2 Isomer 2 d | −45.6 [46.9%] | −16.7 [19.8%] | −35.2 [51.9%] | 64.9 | −32.9 | |
| (Cyclohexanol)2 e | −46.5 [51.8%] | −16.6 [18.5%] | −26.6 [29.7%] | 60.5 | −29.2 | |
| (Phenol)2 f | −41.8 [48.3%] | −28.8 [18.4%] | −15.9 [33.3%] | 58.9 | −27.6 | −29.5 l |
| (Thiophenol)2 PD1- | −24.9 [31.0%] | −47.9 [59.5%] | −7.7 [9.5%] | 54.6 | −25.9 | |
| 2-Adamantanol ··· H2O d | −42.3 [57.6%] | −14.6 [26.7%] | −16.5 [41.3%] | 49.9 | −23.5 | |
| (H2O)2 h | −35.7 [63.5%] | −9.5 [16.8%] | −11.1 [19.8%] | 37.7 | −18.6 | −21.0 l |
| (H2S)2 i | −12.1 [49.0%] | −7.8 [31.7%] | −4.7 [19.3%] | 19.2 | −5.4 | |
| Pyridine–methane j | −3.0 [20.6%] | −10.9 [74.6%] | −0.7 [4.8%] | 9.4 | −5.2 |
a Ref. [23] b Ref. [26]. c Ref. [60]. d This work. e Ref. [21]. f Ref. [22]. g Ref. [61]. h Ref. [57]. i Ref. [62]. j Ref. [63]. k Relative percentage contribution to the attractive interactions (ΔEelec + ΔEdisp + ΔEind). l Ref. [64].
Figure 5NCI plots [49] (upper panels) and reduced electronic density gradient (lowest panel) for the monohydrate and the two dimers of 2-adamantanol (isosurfaces with s = 0.5 a.u.). The NCI plot identifies attractive interactions (such as the O-H···O hydrogen bond) as blue shades, while green and red colors indicate, respectively, weak attractive interactions or repulsive interactions (such as ring critical points). The reduced electronic density of the lowest panel compares the attractive (negative minima) and repulsive (positive minima) interactions in the monohydrate (red dots) and isomer 1 (blue dots) of the 2-adamantanol dimer, dominated by the O-H···O interaction.