| Literature DB >> 35455715 |
Pritmohinder S Gill1,2, Amanda L Elchynski3, Patricia A Porter-Gill2, Bradley G Goodson4, Mary Ann Scott4, Damon Lipinski4, Amy Seay4,5, Christina Kehn4, Tonya Balmakund1,5, G Bradley Schaefer1,2,4,6.
Abstract
Neurodevelopmental disorders have steadily increased in incidence in the United States. Over the past decade, there have been significant changes in clinical diagnoses and treatments some of which are due to the increasing adoption of pharmacogenomics (PGx) by clinicians. In this pilot study, a multidisciplinary team at the Arkansas Children's Hospital North West consulted on 27 patients referred for difficult-to-manage neurodevelopmental and/or neurobehavioral disorders. The 27 patients were evaluated by the team using records review, team discussion, and pharmacogenetic testing. OneOme RightMed® (Minneapolis, MN, USA) and the Arkansas Children's Hospital comprehensive PGx test were used for drug prescribing guidance. Of the 27 patients' predicted phenotypes, the normal metabolizer was 11 (40.8%) for CYP2C19 and 16 (59.3%) for CYP2D6. For the neurodevelopmental disorders, the most common comorbid conditions included attention-deficit hyperactivity disorder (66.7%), anxiety disorder (59.3%), and autism (40.7%). Following the team assessment and PGx testing, 66.7% of the patients had actionable medication recommendations. This included continuing current therapy, suggesting an appropriate alternative medication, starting a new therapy, or adding adjunct therapy (based on their current medication use). Moreover, 25.9% of patients phenoconverted to a CYP2D6 poor metabolizer. This retrospective chart review pilot study highlights the value of a multidisciplinary treatment approach to deliver precision healthcare by improving physician clinical decisions and potentially impacting patient outcomes. It also shows the feasibility to implement PGx testing in neurodevelopmental/neurobehavioral disorders.Entities:
Keywords: ADHD; CYP2C19; CYP2D6; autism spectrum disorder; neurodevelopmental disorders; pharmacogenomics; phenoconversion
Year: 2022 PMID: 35455715 PMCID: PMC9024886 DOI: 10.3390/jpm12040599
Source DB: PubMed Journal: J Pers Med ISSN: 2075-4426
Figure 1Study design for ACNW pilot project. All patients were under 21 years old, had a PGx test as part of their clinical care, and had a consultation with the NWA-PPCS. PGx = pharmacogenomics; ACNW = Arkansas Children’s Northwest; ACH= Arkansas Children’s Hospital; TSI = Translational Software, Inc., (Bellevue, WA, USA); CDS = clinical decision support; CPIC = Clinical Pharmacogenetics Implementation Consortium; DPWG = Dutch Pharmacogenetics Working Group; FDA = Food and Drug Administration.
CYP2C19 and CYP2D6 star alleles (*) on the RightMed® Test and the ACH PGx panel.
| Gene | RightMed® Alleles | ACH PGx Alleles |
|---|---|---|
|
| * 2, * 3, * 4, * 4B, * 10, * 17 | * 2, * 3, * 4A, * 4B, * 5, * 6, * 7, * 8, * 9, * 10, * 11, * 17, * 35 |
|
| * 2, * 2A, * 3, * 4, * 4J, * 4K, * 4M, * 4N, * 5, * 6, * 6C, * 7, * 8, * 9, * 10, * 11, * 12,* 13, * 14, * 15, * 17, * 18, * 19, * 29, * 31, * 34, * 35, * 36, * 39, * 41, * 42, * 59, * 61, * 63, * 64, * 65, * 68, * 69, * 70, * 91, * 109, * 114, CNVs | * 4, * 6, * 7, * 8, * 9, * 10, * 11, * 12, * 14A, * 14B, * 15, * 17, * 18, * 19, * 21, * 29, * 30, * 31, * 33, * 35, * 36, * 38, * 40, * 41, * 42, * 43, * 44, * 45, * 46, * 47, * 49, * 51, * 53, * 54, * 56A, * 56B, * 58, * 62, * 70, * 84, * 100, * 101, CNVs |
CNVs = Copy Number Variations Assay.
Patient Demographics.
| Patient Characteristics | |
|---|---|
| Age, years (AVG ± SD) | 11 ± 4 |
| Sex (%) | |
| Males | 14 (51.9) |
| Race (%) | |
| White | 24 (88.9) |
| Other | 3 (11.1) |
| Ethnicity (%) | |
| Not Hispanic | 23 (85.2) |
AVG = average, SD = standard deviation.
Assigned likely patient CYP2C19 and CYP2D6 phenotypes.
| Gene (Phenotype) | |
|---|---|
| CYP2C19 Phenotype | |
| PM | 1 (3.7) |
| IM | 7 (25.9) |
| NM | 11 (40.8) |
| RM | 7 (25.9) |
| UM | 1 (3.7) |
| CYP2D6 Phenotype | |
| PM | 0 (0) |
| IM | 11 (40.7) |
| NM | 16 (59.3) |
| UM | 0 (0) |
PM = poor metabolizer; IM = intermediate metabolizer; NM = normal metabolizer; RM = rapid metabolizer; UM = ultrarapid metabolizer.
CYP2D6 phenoconversion.
| Gene (Phenotype) | |
|---|---|
| CYP2D6 Phenoconversion | 7 (25.9) |
| *Clinical CYP2D6 Phenotype | |
| PM | 7 (25.9) |
| IM | 8 (29.6) |
| NM | 12 (44.4) |
| UM | 0 (0) |
PM = poor metabolizer; IM = intermediate metabolizer; NM = normal metabolizer; UM = ultrarapid metabolizer; *clinical CYP2D6 phenotype is the phenotype for CYP2D6 based on genotype and concomitant medications generated from the publicly available CYP2D6 calculator [25].
Most common diagnosis for NDDs/NBDs.
| Most Common Diagnosis | |
|---|---|
| ADHD | 18 (66.7) |
| Anxiety Disorder | 16 (59.3) |
| Autism | 11 (40.7) |
| Intellectual Disability | 9 (33.3) |
| Sleep Difficulties | 8 (29.6) |
| Encephalopathy | 7 (25.9) |
The diagnosis for autism, ADHD, anxiety disorder, intellectual disability, and sleep difficulties was conducted per DSM-5 criteria. A diagnosis of a static (non-metabolic or inflammatory) encephalopathy was used in the context of patients with multiple inter-related NDDs/NBDs.
Examples of PGx adoption by the NWA-PPCS multidisciplinary team for guidance of therapy in patients with NDD/NBD.
| PatientID | Diagnoses | Diagnostic Genetic Testing Results | Medications Before PGx | CYP2C19 Phenotype | CYP2D6 Phenotype | Medications After PGx | PGx Medication Change Classification |
|---|---|---|---|---|---|---|---|
| 7 | Encephalopathy | None | NM | NM | Escitalopram 5 mg, 1 tablet daily | New Start | |
| 12 | Middle cerebral artery syndrome | Guanfacine ER 4 mg, 1 table at night | IM | IM | Guanfacine ER 4mg, 1 tablet at bedtime | Alternative Therapy | |
| 26 | Encephalopathy | Exome sequencing non-diagnostic | Methylphenidate 10 mg, 1 tablet two times daily | IM | IM | Methylphenidate 10 mg, 1 tablet two times daily | Adjunct Therapy |
| 28 | ASD | Chromosome Microarray Analysis Normal | Risperidone 0.5 mg, 2 tablets daily | IM | NM | Risperidone 0.5 mg, 2 tablets daily | Confirmed Therapy |
| 30 | ADH | No additional genetic testing | Bupropion 400 mg daily | IM | PM * | Bupropion 400 mg daily | Adjunct Therapy |
NDD = neurodevelopmental disorder; NBD = neurobehavioral disorder; ADHD = attention-deficit hyperactivity disorder; ASD = autism spectrum disorder; PUM1 = Pumilio RNA binding family member 1; KAT8 = lysine acetyltransferase 8; XR or ER = extended release; CYP2D6 and CYP2C19 Phenotype IM = intermediate metabolizer; NM = normal metabolizer; * clinical phenotype based on the patients genotype result and concomitant medication.
PGx informing the therapy decisions.
| Utilized PGx to Guide Therapy | |
|---|---|
| New medication start | 6 (22.2) |
| Alternative therapy | 5 (18.5) |
| Adjunct therapy | 4 (14.8) |
| Confirmed therapy | 3 (11.1) |