Literature DB >> 35450824

Measurement of the persistence length of cytoskeletal filaments using curvature distributions.

Pattipong Wisanpitayakorn1, Keith J Mickolajczyk2, William O Hancock3, Luis Vidali4, Erkan Tüzel5.   

Abstract

Cytoskeletal filaments, such as microtubules and actin filaments, play important roles in the mechanical integrity of cells and the ability of cells to respond to their environment. Measuring the mechanical properties of cytoskeletal structures is crucial for gaining insight into intracellular mechanical stresses and their role in regulating cellular processes. One of the ways to characterize these mechanical properties is by measuring their persistence length, the average length over which filaments stay straight. There are several approaches in the literature for measuring filament deformations, such as Fourier analysis of images obtained using fluorescence microscopy. Here, we show how curvature distributions can be used as an alternative tool to quantify biofilament deformations, and investigate how the apparent stiffness of filaments depends on the resolution and noise of the imaging system. We present analytical calculations of the scaling curvature distributions as a function of filament discretization, and test our predictions by comparing Monte Carlo simulations with results from existing techniques. We also apply our approach to microtubules and actin filaments obtained from in vitro gliding assay experiments with high densities of nonfunctional motors, and calculate the persistence length of these filaments. The presented curvature analysis is significantly more accurate compared with existing approaches for small data sets, and can be readily applied to both in vitro and in vivo filament data through the use of the open-source codes we provide.
Copyright © 2022 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2022        PMID: 35450824      PMCID: PMC9199094          DOI: 10.1016/j.bpj.2022.04.020

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   3.699


  40 in total

1.  The coiled-coil of the human Rad50 DNA repair protein contains specific segments of increased flexibility.

Authors:  John van Noort; Thijn van Der Heijden; Martijn de Jager; Claire Wyman; Roland Kanaar; Cees Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-12       Impact factor: 11.205

2.  Assays for actin sliding movement over myosin-coated surfaces.

Authors:  S J Kron; Y Y Toyoshima; T Q Uyeda; J A Spudich
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

3.  Random bursts determine dynamics of active filaments.

Authors:  Christoph A Weber; Ryo Suzuki; Volker Schaller; Igor S Aranson; Andreas R Bausch; Erwin Frey
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-10       Impact factor: 11.205

4.  Kinetics of nucleotide-dependent structural transitions in the kinesin-1 hydrolysis cycle.

Authors:  Keith J Mickolajczyk; Nathan C Deffenbaugh; Jaime Ortega Arroyo; Joanna Andrecka; Philipp Kukura; William O Hancock
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-16       Impact factor: 11.205

5.  Microtubule curvatures under perpendicular electric forces reveal a low persistence length.

Authors:  M G L Van den Heuvel; M P de Graaff; C Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-21       Impact factor: 11.205

6.  Anterograde microtubule transport drives microtubule bending in LLC-PK1 epithelial cells.

Authors:  Andrew D Bicek; Erkan Tüzel; Aleksey Demtchouk; Maruti Uppalapati; William O Hancock; Daniel M Kroll; David J Odde
Journal:  Mol Biol Cell       Date:  2009-04-29       Impact factor: 4.138

Review 7.  Mechanics of microtubules.

Authors:  Taviare Hawkins; Matthew Mirigian; M Selcuk Yasar; Jennifer L Ross
Journal:  J Biomech       Date:  2009-10-08       Impact factor: 2.712

8.  Persistence length of fascin-cross-linked actin filament bundles in solution and the in vitro motility assay.

Authors:  Hideyo Takatsuki; Elina Bengtsson; Alf Månsson
Journal:  Biochim Biophys Acta       Date:  2014-01-10

Review 9.  Taking another look with fluorescence microscopy: image processing techniques in Langmuir monolayers for the twenty-first century.

Authors:  Benjamin L Stottrup; Andrew H Nguyen; Erkan Tüzel
Journal:  Biochim Biophys Acta       Date:  2010-01-11

10.  Flexural rigidity of microtubules and actin filaments measured from thermal fluctuations in shape.

Authors:  F Gittes; B Mickey; J Nettleton; J Howard
Journal:  J Cell Biol       Date:  1993-02       Impact factor: 10.539

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