Mariarita Paciolla1, Christos N Likos2, Angel J Moreno1,3. 1. Centro de Física de Materiales (CSIC, UPV/EHU) and Materials Physics Center MPC, Paseo Manuel de Lardizabal 5, 20018 San Sebastián, Spain. 2. Faculty of Physics, University of Vienna, Boltzmanngasse 5, A-1090 Vienna, Austria. 3. Donostia International Physics Center, Paseo Manuel de Lardizabal 4, 20018 San Sebastián, Spain.
Abstract
We perform simulations to compute the effective potential between the centers-of-mass of two polymers with reversible bonds. We investigate the influence of the topology on the potential by employing linear and ring backbones for the precursor (unbonded) polymer, finding that it leads to qualitatively different effective potentials. In the linear and ring cases the potentials can be described by Gaussians and generalized exponentials, respectively. The interactions are more repulsive for the ring topology, in analogy with known results in the absence of bonding. We also investigate the effect of the specific sequence of the reactive groups along the backbone (periodic or with different degrees of randomness), establishing that it has a significant impact on the effective potentials. When the reactive sites of both polymers are chemically orthogonal so that only intramolecular bonds are possible, the interactions become more repulsive the closer to periodic the sequence is. The opposite effect is found if both polymers have the same types of reactive sites and intermolecular bonds can be formed. We test the validity of the effective potentials in solution, in a broad range of concentrations from high dilution to far above the overlap concentration. For this purpose, we compare simulations of the effective fluid and test particle route calculations with simulations of the real all-monomer system. Very good agreement is found for the reversible linear polymers, indicating that unlike in their nonbonding counterparts many-body effects are minor even far above the overlap concentration. The agreement for the reversible rings is less satisfactory, and at high concentration the real system does not show the clustering behavior predicted by the effective potential. Results similar to the former ones are found for the partial self-correlations in ring/linear mixtures. Finally, we investigate the possibility of creating, at high concentrations, a gel of two interpenetrated reversible networks. For this purpose we simulate a 50/50 two-component mixture of reversible polymers with orthogonal chemistry for the reactive sites, so that intermolecular bonds are only formed between polymers of the same component. As predicted by both the theoretical phase diagram and the simulations of the effective fluid, the two networks in the all-monomer mixture do not interpenetrate, and phase separation (demixing) is observed instead.
We perform simulations to compute the effective potential between the centers-of-mass of two polymers with reversible bonds. We investigate the influence of the topology on the potential by employing linear and ring backbones for the precursor (unbonded) polymer, finding that it leads to qualitatively different effective potentials. In the linear and ring cases the potentials can be described by Gaussians and generalized exponentials, respectively. The interactions are more repulsive for the ring topology, in analogy with known results in the absence of bonding. We also investigate the effect of the specific sequence of the reactive groups along the backbone (periodic or with different degrees of randomness), establishing that it has a significant impact on the effective potentials. When the reactive sites of both polymers are chemically orthogonal so that only intramolecular bonds are possible, the interactions become more repulsive the closer to periodic the sequence is. The opposite effect is found if both polymers have the same types of reactive sites and intermolecular bonds can be formed. We test the validity of the effective potentials in solution, in a broad range of concentrations from high dilution to far above the overlap concentration. For this purpose, we compare simulations of the effective fluid and test particle route calculations with simulations of the real all-monomer system. Very good agreement is found for the reversible linear polymers, indicating that unlike in their nonbonding counterparts many-body effects are minor even far above the overlap concentration. The agreement for the reversible rings is less satisfactory, and at high concentration the real system does not show the clustering behavior predicted by the effective potential. Results similar to the former ones are found for the partial self-correlations in ring/linear mixtures. Finally, we investigate the possibility of creating, at high concentrations, a gel of two interpenetrated reversible networks. For this purpose we simulate a 50/50 two-component mixture of reversible polymers with orthogonal chemistry for the reactive sites, so that intermolecular bonds are only formed between polymers of the same component. As predicted by both the theoretical phase diagram and the simulations of the effective fluid, the two networks in the all-monomer mixture do not interpenetrate, and phase separation (demixing) is observed instead.
Single-chain
nanoparticles (SCNPs) are soft nano-objects, of size
in the range 3–30 nm, which are synthesized through purely
intramolecular cross-linking of functionalized polymers (precursors).[1] Both for their size and for their internal malleability
that allows for quick response to environmental changes, SCNPs are
promising macromolecules for applications as catalytic nanoreactors,
drug delivery nanocarriers, and biosensing probes, to name a few.[2−8] Depending on several factors implemented on the precursor, such
as the solvent conditions, its molecular topology, chain stiffness,
or the presence of crowders, the resulting SCNPs present a broad range
of structural conformations, from very sparse objects[9,10] to more compact and even nanogel-like SCNPs.[11−13] In the usual
route (linear precursors in good solvent), the resulting SCNPs are
sparse objects where short-range loops dominate the distribution of
cross-links. This is a direct consequence of the self-avoiding conformations
of the linear precursor in good solvent. In such conformations contacts
between monomers separated by long contour distances and formation
of long-range loops—which are efficient for folding into globular
shapes—are infrequent. The SCNP conformations are dominated
by short loops and have scaling exponents of ν ∼ 0.5
for the dependence of the size on the number of monomers (R ∼ Nν), far from
the globular state ν ∼ 1/3.Synthesis of SCNPs
has been traditionally dominated by irreversible
intrachain cross-linking of the precursor. In recent years, growing
efforts have been dedicated to broaden the functionalities and areas
of applicability of SCNPs through the implementation of reversible
bonds in their backbone via noncovalent and dynamically covalent interactions.
The current SCNP chemistry toolbox of reversible bonds includes, among
others, hydrogen bonds, metal complex formation, hydrazone, enamine,
anthrazene, and so on.[14−17] Because breaking and formation of these bonds can be activated and
tuned through factors such as temperature, pH, or light, the single-chain
character of these objects in solution is lost when their concentration
is high enough, leading to the formation of aggregates and eventually
a percolating network. Because of the reversibility of the bonds the
bonding pattern of the network is dynamic, allowing for viscous flow
of the material and for physical gelation if the external stimuli
are switched off (e.g., by decreasing temperature). The possibility
of designing smart polymers that can reversibly transform from solutions
of SCNPs to hydrogels has been demonstrated experimentally.[18,19] These findings pave the way to use polypeptide-based SCNPs as building
blocks for biocompatible and biodegradable materials with self-healing
properties and applications in tissue engineering.[19]Recent simulations have investigated the transition
from a solution
of sparse SCNPs at high dilution to a dynamic network in semidilute
and concentrated conditions for a system of linear chains with reversibly
bonding sites in their backbones.[20] Some
remarkable results have been reported: (i) the intramolecular bonds
still form the majority of the overall bonding, and the connectivity
of the network is mediated by a few intermolecular bonds per chain;
(ii) the bonding pattern of the network is dynamic, and the polymers
can diffuse long distances through breaking and formation of bonds
at different sites without losing their connection to the percolating
cluster; (iii) the size and shape of the SCNP conformations at high
dilution are essentially unaffected by crowding and remain in the
network even at densities far above the overlap concentration. The
latter is a rather unusual result, in clear contrast with the shrinkage
found for other sparse objects such as simple (unreactive) linear
chains and rings, which by increasing the concentration change their
conformations from self-avoiding (Flory exponent ν ≈
0.59) to random walks (ν = 1/2) in the case of linear chains[21] and to fractal (“crumpled”) globules
(ν = 1/3) in the case of rings.[22,23] The weak effect
of crowding on the molecular conformations of the reversible SCNPs
is inherently related to the formation of intermolecular bonds. Indeed,
when the SCNPs are prepared at high dilution through irreversible
intramolecular cross-linking and are transferred to high concentration,
with no intermolecular bonding, they show a collapse similar to that
of rings to crumpled globular conformations.[24,25]The effective potential between two macromolecules separated
by
a given distance is the free energy needed to bring them from the
infinity to that distance. Unlike in hard-core colloids, the free
energy cost for full interpenetration of the macromolecules (zero
distance) is finite because their centers-of-mass can coincide in
space. The cost of full interpenetration strongly depends on the topology
and internal deformability of the two macromolecules, typically varying
between a few and tens of times the thermal energy.[26,27] Averaging out the molecular internal degrees of freedom and keeping
one or a few relevant coordinates (usually the centers-of-mass) reduces
the system to an effective fluid of ultrasoft particles interacting
through the effective potential.[28−32] This methodology allows not only for simulating much
larger scales than in the monomer-resolved models but also for the
treatment of the system by methods from liquid state theory, producing
a powerful tool for predicting large-scale organization and phase
behavior.[33,34] A major limitation of this approach is that
because the effective potential is derived for a pair of polymers
in the absence of others, it neglects the many-body interactions that
are present in a crowded solution or a melt. This approximation works
well below and even slightly above the overlap concentration (i.e.,
the concentration at which the mean intermolecular distance is of
the order of the unperturbed molecular size). However, it fails dramatically
far above the overlap concentration when many-body effects become
a dominant contribution (shrinkage of molecular size being a manifestation
of them). A paradigmatic example is the nonemergence of the cluster
crystal phase predicted by the effective potential for flexible ring
polymers,[35] which instead collapse to crumpled
globular conformations that hinder the full interpenetration required
to form the cluster nodes.As mentioned above, when linear polymers
with reversible bonds
assemble into a dynamic percolating network, they essentially maintain
the SCNP conformations adopted at high dilution.[20] This result suggests that many-body effects can be negligible
for this system, and the interaction of a tagged pair with their neighboring
molecules is effectively given by a flat energy landscape not affecting
the effective mutual force between the two polymers of the tagged
pair. In such a case, the validity of the effective potential to describe
the static correlations between molecular centers-of-mass could extend
to unprecedented densities far above the overlap concentration. With
this idea in mind we investigate, by means of simulations, the validity
of the effective potential for a system of generic bead–spring
polymers that switches from a solution of SCNPs at high dilution to
a reversibly cross-linked polymer network at high concentrations.
We explore a broad concentration range between both limits as well
as the effect of the molecular topology of the unbonded polymer (linear
or ring) and the sequence of reactive sites (with different degrees
of randomness) along the molecular backbone. We test the accuracy
of the effective potentials by comparing simulations of the real all-monomer
systems with their corresponding effective fluids of ultrasoft particles
as well as with predictions from the test particle route.[36] We also test the approach for a ring–linear
mixture as well as for a two-component linear/linear mixture with
orthogonal bonding chemistry, where intermolecular bonding is only
allowed between chains of the same component. We find that both the
topology of the unbonded polymer and the specific sequence of the
reactive sites along the polymer backbone have a strong impact on
the effective potential. As suggested by the weak effect of the concentration
on the size and shape of the linear polymers with reversible bonds,
the simulations confirm that the effective fluid provides a very good
description of the real system at densities far above the overlap
concentration. In a similar fashion to the case of ring polymers with
no bonding, the effective fluid approach is less satisfactory for
the ring-based system, and the predicted clustering behavior is not
found in the real system. The effective potential becomes much more
repulsive when intermolecular bonding is switched off. As a consequence,
the effective binary fluid representing the mixture with orthogonal
bonding chemistry shows demixing. This behavior is confirmed in the
all-monomer real mixture, which shows spontaneous demixing within
the simulation time scale. This striking result suggests that experimental
interpenetrated networks with reversible bonds are kinetically trapped
states where demixing is prevented by large barriers arising from
long bond lifetimes and entanglements.The article is organized
as follows. In section we define the model and interactions implemented
in the all-monomer simulations. We also give the simulation details
for the computation of the effective potentials and briefly describe
the analytical test particle route approach. In section we report a critical analysis of the obtained
effective interactions as a function of the topology of the precursor
and the specific sequence of reactive sites. In section we present theory and simulation results
for the solutions at different concentrations and for the phase behavior
of the mixtures and discuss the validity of the effective potentials
to describe the behavior of the all-monomer real systems. In section we summarize our
conclusions.
Model and Simulation Details
The precursors are modeled as fully flexible linear chains or rings
made of 200 beads (monomers). A fraction of these monomers f = Nr/Nm = 20/200 = 0.1 are reactive, where Nr and Nm are respectively the number
of reactive sites and the total number of monomers. The reactive sites
can form and break bonds with other reactive sites within the same
polymer (intrabonding) or with reactive sites belonging to other polymers
(interbonding). In all cases, we perform Langevin dynamics simulations.
In the first step we use them to obtain the effective potentials (section ); subsequently,
we use them to simulate the effective fluid at different concentrations,
and we compare results with simulations of the corresponding all-monomer
system (section ). Moreover, we compare simulation results with theoretical calculations
by the test particle route (section ).
Model
We describe
the polymer chains
by the bead–spring model of Kremer and Grest.[37] Thus, excluded volume interactions among the beads are
modeled by the Weeks–Chandler–Andersen (WCA) potential:The permanent bonds leading to the connectivity
of the precursor are implemented via a finite extensible nonlinear
elastic (FENE) potential between consecutive monomers. This is given bywhere KF = 15
and R0σ = 1.5σ is the maximum
elongation of the bond.Representation of the different interaction
potentials used in
this study. The combination of the WCA and FENE potentials results
in a deep potential well that sets the mean length of the permanent
bonds at rmin,irrev ≈ 0.96σ.
The combination of the WCA and the reversible bonding potential Vss(r) defines the mean length
of the reversible bonds at rmin,rev ≈
1.0σ. The function |Vssmin|Φ3(r) represents the contribution of a bond belonging to a triplet to
the three-body potential (see text).For implementing the reversible bonds between the reactive sites,
we adopt the potential introduced by Rovigatti et al.:[38]In our system we set the capture radius rc = 1.3σ while ϵss =
12ϵ and Kss = [σ/2(σ
– rc)]2. With these
choices the potential and force are continuous and zero at the capture
radius. Moreover, the potential is short-ranged and has a deep attractive
minimum of energy Vssmin = −12kBT (which can be seen as the bond energy) at the
distance rmin = 1.0σ. When the distance
between two reactive sites is smaller than rc, the interaction of eq becomes nonzero and attractive and the sites form a mutual
bond. The bond is broken when a fluctuation moves the mutual distance
beyond rc. Because we wish to limit the
valence to a single reversible bond per reactive site, we make use
of the swapping algorithm introduced by Sciortino.[39] Thus, we add a repulsive three-body contribution in such
a way that it is switched on when a reactive site k enters the capture radius of a reactive site i that
is already bonded to another one j. The three-body
potential is defined aswhere the sum includes all i, j, k triplets, andTherefore,
0 < V3body (r) ≤
|Vssmin| for each triplet, and when
a triplet is formed, the energy decrease resulting from the new bond
is compensated by the three-body repulsive term without changing the
potential energy of the system. This three-body term makes triplets
very short-lived and spontaneously leads to bond swapping, which speeds
up the exploration of different patterns of the bond network. Moreover,
monovalent bonding is governed by a Hamiltonian, unlike methods based
on random choices when one site can bind to more than one candidate.[9]Because the polymer is fully flexible,
a monomer qualitatively
corresponds to a Kuhn length (of the order of 10 monomers), so that
the actual fraction of reactive sites qualitatively corresponds to
1% in real polymers. Moreover, because bonding is nondirectional (unlike
in patchy models), a reactive site qualitatively represents a functionalized
pendant group with high flexibility. The former conditions are indeed
common in experimental SCNPs, which are the natural state of our systems
at high dilution. For simplicity, we set m = 1 for
all monomers, so that the center-of-mass coincides with the geometrical
center. The simulations were performed at temperature by using a Langevin thermostat
with a friction
coefficient γ = 0.05.[40] Equations
of motion were integrated within the scheme of ref (41) by using a time step δt = 0.005.
Computation of the Effective
Potential
The effective potential acting between the two
polymers (1, 2) can
be calculated by integration of the net force over the axis joining
their centers-of-mass (see e.g. ref (29)): Feff,12 = −∇Veff(R12), where R12 is the distance between the two centers-of-mass. The net force experienced
by one of the polymers is computed as the total force (nonbonded and
bonded) exerted on its monomers by the monomers of the other polymer.
In the following expression we consider the force exerted by polymer
2 on polymer 1:where F is the force
exerted by the jth monomer of polymer 2 on the ith monomer
of polymer 1, the sum runs over all i(1), j(2) pairs, and the subscript on the right-hand side means
that the average must be evaluated at the fixed separation R12. Obviously the expression accounting for
the interactions of polymer 1 on polymer 2 just produces the opposite
result, and integration leads to the same effective potential. The
statistical averages of the components perpendicular to the axis joining
the centers-for-mass are zero.We performed Langevin dynamics
simulations where the positions of the centers-of-mass of the two
polymers, and therefore their mutual distance R12, were kept fixed at every time step. We performed the simulation
runs at the fixed distances R12/σ
= 0, 1, 2, ..., 34, 35. For each distance we performed an equilibration
run of 107 time steps, followed by a production run of
at least 4 × 108 steps. To improve statistics as much
as possible, the total force Feff was obtained
by on-the-fly averaging the summation of eq over all the time steps of the production
run. None of the initial bonds survived after typically 6 × 106 steps. Therefore, the simulations were long enough to achieve
a good sampling of the ensemble of bonding patterns.To test
if there is any dependence of the effective interactions
on the specific sequence of reactive sites along the backbone of the
precursor, we consider three different cases to simulate for a couple
of polymers with reversible bonds: (i) A random sequence of the 20
reactive sites with the constraint that there is at least nmin = 1 nonreactive sites between consecutive
reactive sites (to prevent trivial bonding). This case will be denoted
as “gap1”. (ii) A random sequence with the constraint nmin = 4. This case will be denoted as “gap4”.
(iii) A periodic sequence; i.e., there is a constant separation nmin = 9 between consecutive reactive sites.
This case will be denoted as “periodic”. In both cases
i and ii the sequences of the two polymers are different, with the
only condition that they have the same nmin. Moreover, to assess whether even by using the same value of nmin the specific realization of the sequences
affects to the effective potential, we simulated two different couples
(denoted as couple 1 and couple 2) for each of the cases “gap
1” and “gap 4”. Figures S1 (linear) and S2 (rings)
in the Supporting Information show the
specific sequences of the simulated couples. Moreover, we investigated
a couple formed by a linear chain and a ring. In this case the simulations
were limited to the case nmin = 1 (gap
1), and we used the first polymer of their corresponding couple 1.
Simulations of All-Monomer and Effective Fluids
We performed Langevin dynamics simulations of solutions of the
real all-monomer polymers and of the corresponding effective fluids.
We explored the validity of the effective fluid approach in a broad
concentration range below and above the overlap concentration,[21] which we define as ρ* = Nm/(2Rg0)3, where Rg0 is the radius of gyration of the isolated
polymer (i.e., in the absence of all intermolecular interactions).
Therefore, if ρ = NpNm/V is the absolute density (number of
monomers per volume), with V the volume of the simulation
box and Np the number of polymers in the
box, the reduced density (normalized by ρ*) is ρ/ρ*
= Np(2Rg0)3 /V. In the case of a binary mixture of components
(1, 2) we define the reduced concentration as ρ/ρ* = V–1[Np,1(2Rg0,1)3 + Np,2(2Rg0,2)3]. Therefore, the
overlap concentration of the binary mixture is ρ* = (Np,1Nm,1 + Np,2Nm,2)/[Np,1(2Rg0,1)3 + Np,2(2Rg0,2)3]. For the isolated linear and ring polymers
we find Rg0/σ = 9.93 and 7.72, respectively.
Therefore, the density of monomers at the overlap concentration is
ρ*σ–3 = 0.025 and 0.064 for the pure
solutions of linear chains and rings with reversible bonds, respectively.
For a 50/50 linear/ring mixture the overlap concentration is ρ*σ–3 = 0.036.In the all-monomer simulations we
investigated the pure systems of linear chains and rings with reversible
bonds, a 50/50 linear/ring mixture, and a mixture of linear chains
with orthogonal bonding. In the latter, bonding (intra- or intermolecular)
was only permitted between polymers of the same component, and all
WCA, FENE, and reversible bonding interactions were the same as in
the other simulated systems, with the only condition that A- and B-reactive
sites could not form mutual bonds and only interacted through the
WCA potential. Although the breaking and formation of bonds can lead
to concatenation of reversible loops in both the linear chain and
ring-based systems, in the latter intermolecular concatenation between
the permanent ring backbones must be avoided. Thus, nonconcatenated
dilute ring-based systems were initially prepared and compressed to
the target concentrations where they were further equilibrated. To
prepare the linear–linear mixture with orthogonal bonding chemistry,
configurations were taken from the one-component system and half of
the chains were randomly assigned to each component of the mixture,
which was further equilibrated with no intermolecular bonding between
different components. Therefore, the final demixed state that we anticipated
in the Introduction was reached spontaneously
from an initially mixed state, demonstrating the robustness of this
result.The duration of the equilibration and production runs
was typically
107 and 8 × 107 time steps, respectively.
To improve statistics, eight independent runs were simulated at each
concentration. The polymers moved at least 5 times their own diameter
of gyration at all the investigated densities, thus guaranteeing a
good sampling of the configuration space. In all cases the total number
of polymers in the simulation box was Np = 108, with Nm = 200 monomers and Nr = 20 reactive sites per polymer, and the concentration
was tuned by varying the box size. All the polymers had different
random sequences of reactive sites corresponding to the case “gap
1”. The effective fluids were simulated by using the corresponding
effective potentials obtained for the couple 1 of the case “gap
1”. Because of the much smaller number of degrees of freedom,
in the effective fluids we simulated larger boxes of Np = 1000 effective particles, rescaling the box size to
have the same concentrations as in the respective all-monomer systems. Tables S1 and S2 show the simulated box sizes
for each all-monomer and effective system and the respective concentrations
in absolute and reduced units. To test the effect of the box size,
some concentrations in the effective fluid were also simulated with Np = 108 particles. Structural properties were
not changed within statistics. This is demonstrated in Figure S3, which shows representative results
of the radial distribution function g(r) of the effective fluid of linear chains with reversible bonds.
Data are shown at the lowest and highest investigated concentrations
and in both cases for Np = 108 and 1000
effective particles (with the respective rescaling of the box size
to produce the same concentration). No differences are found within
statistics in the respective g(r)’s. Therefore, we conclude that finite size effects are not
significant (except for the phase separating system of chains with
orthogonal bonds, where the phase growth is obviously limited by the
box size).
Test Particle Route to
Fluid Structure
The test particle route (TPR) will allow
us to compute the radial
distribution function of the effective fluid by using the formalism
of mean-field density functional theory (DFT) for inhomogeneous fluids.[36] In our study each particle of the effective
fluid represents the center-of-mass of one polymer and interacts with
the others via the effective potential Veff(r) computed as described in section . Within TPR, a particle
is fixed at the origin of the system. As a consequence, the particle
perturbs the system, and the density of particles around it changes
from a constant bulk value ρb to a spatially varying
local density ρ(r). The external potential acting
on the particle at the origin is equal to the effective potential,
implying that the radial distribution function can be calculated as g(r) = ρ(r)/ρb. Following the derivation from TPR based on DFT suitable
for soft potentials (see the Supporting Information for details), the partial radial distribution function for the i, j components of a mixture of n components is given by[42]where ρb, is the macroscopic density of the i component, h(r) = g(r) –
1 is the ij component of the
total correlation function, Veff,(r) is the interaction potential between species k and j, and the symbol ∗ denotes
convolution: [h∗Veff,](r)
= ∫h(r′)Veff,(|r – r′|) d3r′.
Molecular
Conformations and Computation of the
Effective Potentials
Conformations of Two Interpenetrated
Polymers
We have investigated effective interactions between
two polymers
with reversible bonds, namely two linear chains (“linear–linear”),
two rings (“ring–ring”), and a linear chain and
a ring (“linear–ring”). In all cases we have
simulated two possibilities of bonding. In the first one (denoted
as “all bonds”) we carry out standard runs where the
two polymers can form both intra- and intermolecular bonds. In the
second case (denoted as “only intra”) only intramolecular
bonds are allowed; i.e., reactive sites belonging to different polymers
only interact through the WCA potential and cannot form mutual bonds.
Before discussing the effective interactions, we characterize conformations
of the two interacting polymers through their radius of gyration Rg and the asphericity parameter a. This parameter (0 ≤ a ≤ 1) measures
deviations from spherosymmetrical conformations (a = 0) and is defined aswhere λ1 ≥ λ2 ≥ λ3 are the eigenvalues of the gyration
tensor of the polymer. Figure shows for each of the topologies (linear, ring) and sequences
of reactive sites (couples 1, 2 of gap1 and gap4, and periodic) the
distributions of instantaneous values of Rg and a collected from the trajectories. The data
are shown for isolated polymers (mimicking the case Veff(r → ∞) = 0). Only the
distributions for the first polymer of each couple of Figures S1 and S2 are shown. Figures S4 and S5 compare for each case the distributions
of the two polymers of the couple. As can be seen, the ring polymers
with reversible bonds are smaller and closer to spherical than their
linear counterparts. For the same value of nmin the specific sequences (4 in total for couple 1 or couple
2) have at most a minor effect on the distributions P(Rg) and P(a). However, Figure shows that changing the typical distance between consecutive reactive
groups does have a systematic effect on P(Rg). Namely, increasing nmin leads to smaller sizes of the polymers. This is not surprising
because longer distances between consecutive reactive groups promote
the formation of longer loops, resulting in a stronger reduction of
the molecular size with respect to the linear precursor. No significant
effect of nmin on P(a) is found.
Figure 2
Distributions of the instantaneous values of the radius
of gyration
(a, b) and the asphericity (c, d) for isolated polymers with reversible
bonds: linear chains (a, c) and rings (b, d). Different sets correspond
to different sequences of reactive sites (see legend in panel (d)).
Distributions of the instantaneous values of the radius
of gyration
(a, b) and the asphericity (c, d) for isolated polymers with reversible
bonds: linear chains (a, c) and rings (b, d). Different sets correspond
to different sequences of reactive sites (see legend in panel (d)).Figures S6 and S7 show
the effect of
the intermolecular interactions on the size and shape of the two polymers.
The distributions P(Rg) (S6) and P(a) (S7) now correspond
to a distance between centers-of-mass r = 3σ
and allowing for intermolecular bonding. Similar results are found
for other close distances. As can be seen in Figure S6, the mutual interaction tends to swell both polymers (the
maxima of P(Rg) are shifted
by about 15%) with respect to the isolated (r →
∞) case. The mutual interaction also tends to increase the
asphericity (Figure S7). A remarkable effect
for the ring–ring case is that the two polymers do not swell
in the same way. This can be explained by the fact that at short intermolecular
distances one of the rings is threaded by the other one. Figure shows typical conformations
of the two polymers at mutual distance r = 0 (from
(a) to (c): linear–linear, ring–ring, and linear–ring).
Panels b and c illustrate the threading of one ring by the other polymer
(this also occurs in the linear–ring case). The asymmetry found
in the radii of gyration of the two interpenetrated rings is also
reflected in their different asphericities (Figure S7), though the effect
is less pronounced than in P(Rg). Figure S8 shows the time dependence
of the ratio of the instantaneous Rg’s
of the two polymers at a mutual distance r = 3σ.
Orange curves are the bare data. Blue curves are the data smoothed
by 100 point averaging. Whereas in the linear case the ratio quickly
fluctuates, in the ring case it is relatively persistent, as expected
for a threading mechanism. Moreover, the fact that the ratio for the
two rings fluctatuates above and below 1 shows that both rings alternate
their threading/threaded character, which is a signature of good configurational
sampling.
Figure 3
Typical snapshots from MD runs at a fixed distance r = 0 between centers-of-mass and with intermolecular bonding switched
on: (a) linear–linear, (b) ring–ring, and (c) linear
(blue/cyan)–ring (red/yellow). Reactive sites are represented
by cyan and yellow beads. Threading of one ring by the other polymer
is found in both (b) and (c).
Typical snapshots from MD runs at a fixed distance r = 0 between centers-of-mass and with intermolecular bonding switched
on: (a) linear–linear, (b) ring–ring, and (c) linear
(blue/cyan)–ring (red/yellow). Reactive sites are represented
by cyan and yellow beads. Threading of one ring by the other polymer
is found in both (b) and (c).Figure shows the
effect of switching on and off the intermolecular bonds on the conformations
of the two polymers at a close distance r = 3σ.
In the case of the linear chains there is a tiny shrinking of the
size of both polymers when intermolecular bonding is allowed, which
is presumably due to the slight reduction of the fluctuations when
a few intermolecular bonds connect the two polymers. A different behavior
is observed in the pair of rings, whose sizes change in opposite directions
when they form intermolecular bonds and their size disparity is reduced.
Thus, the larger threaded ring shrinks and the smaller threading ring
swells. The combination of both effects, occurring in the asymmetric
pair created by threading, reduces distances between segments of different
polymers and facilitates the formation of intermolecular bonds.
Figure 4
Left column:
distributions of the radius of gyration for two linear
polymers with reversible bonds at a distance r12 = 3σ between centers of mass. Empty symbols correspond
to simulations without intermolecular bonding. Filled symbols correspond
to simulations where intermolecular bonds are allowed. Right column:
as the left column, for two rings.
Left column:
distributions of the radius of gyration for two linear
polymers with reversible bonds at a distance r12 = 3σ between centers of mass. Empty symbols correspond
to simulations without intermolecular bonding. Filled symbols correspond
to simulations where intermolecular bonds are allowed. Right column:
as the left column, for two rings.
Effective Potentials
In Figure a we show the effective
potentials obtained for the interaction between two linear chains
with reversible bonds. Figure b shows the corresponding results for two rings, and Figure c compares results
of the former cases with the effective potential between a linear
chain and a ring. All data sets in Figure c correspond to sequences gap 1, namely,
the couples 1 of Figure a,b for the linear–linear and ring–ring case. For the
linear–ring case the simulations used the first polymer of
the couples 1 of the linear–linear and ring–ring cases.
The symbols in all panels are the results obtained from the simulations.
The solid lines are fits to a main function plus a tail, both given
by generalized exponentials,[43] βVeff(r) = a1 exp(−b1r) + a2 exp(−b2r). The tail is added to
obtain the best possible description of the data sets not only for
the core of the potential but also for all distances and down to energies
much lower than kBT.
In general, the interactions between the linear chains with reversible
bonds can be described by Gaussian functions (even without needing
the tail), whereas exponents m > 2 are needed for ring–ring and ring–linear
interactions. Table shows the functions that fit the potentials found for the linear–linear
(all bonds and only intra), ring–ring (all bonds), and linear–ring
(all bonds) interactions, namely, in the cases “gap 1, couple
1”. These are the potentials that will be used in the simulations
of the effective fluids discussed in the next section.
Figure 5
Effective potentials
(scaled by β = (kBT)−1) for linear–linear
(a) and ring–ring interactions (b). Distances are normalized
by the radius of gyration Rg0 of the isolated
polymers. Different data sets correspond to different sequences of
reactive groups (see main text). Filled and empty symbols correspond
to simulations with and without intermolecular bonding. Solid lines
are fits to model functions (see main text). Panel (c) compares results
for the linear–ring interaction with the linear–linear
and ring–ring cases. Here results for “gap 1, couple
1” are only included, and for the linear–ring interaction
the distance is normalized by the average of the respective Rg0’s of the linear chain and the ring.
Table 1
Effective Potentials Used in the Effective
Fluids (See Main Text for Explanation)a
linear–linear, all
bonds
ring–ring,
all bonds
linear–ring, all
bonds
linear–linear, only
intra
Rg0 is the radius of gyration of the isolated
polymer, and in the case
of the linear–ring interaction we use the average of the respective Rg0’s of the isolated linear and ring
polymers.
Rg0 is the radius of gyration of the isolated
polymer, and in the case
of the linear–ring interaction we use the average of the respective Rg0’s of the isolated linear and ring
polymers.Effective potentials
(scaled by β = (kBT)−1) for linear–linear
(a) and ring–ring interactions (b). Distances are normalized
by the radius of gyration Rg0 of the isolated
polymers. Different data sets correspond to different sequences of
reactive groups (see main text). Filled and empty symbols correspond
to simulations with and without intermolecular bonding. Solid lines
are fits to model functions (see main text). Panel (c) compares results
for the linear–ring interaction with the linear–linear
and ring–ring cases. Here results for “gap 1, couple
1” are only included, and for the linear–ring interaction
the distance is normalized by the average of the respective Rg0’s of the linear chain and the ring.Figure reveals
several trends. The potentials (both with intermolecular bonding switched
on and off) are more repulsive for ring–ring than for linear–linear
interactions, the linear–ring case being intermediate between
the former two. This is consistent with the findings in the linear
and ring precursors (i.e., in total the absence of both intra- and
intermolecular bonding) and reveals that the topological interaction
is again relevant. As can be seen in Figure a,b, if only intramolecular bonding is allowed
(empty symbols), the amplitudes of the potentials are systematically
higher than in their respective precursors (about 2.5kBT and 6kBT for linear–linear and ring–ring
precursors, respectively[35]). This result
is not surprising because the presence of intramolecular loops, even
if they are transient, enhances steric hindrance and topological constraints
and creates higher effective barriers for interpenetration than in
the respective precursors.As can be seen, the effective potential
becomes systematically
stronger, with variations of about 30–50% in its amplitude,
by moving from the “gap 1” to the periodic sequence
of the reactive groups. As mentioned before, increasing the distance
between consecutive reactive groups promotes the formation of longer
intramolecular loops and reduces the molecular size. This hinders
interpenetration and leads to stronger effective repulsions. For a fixed value of nmin the specific
sequence of reactive groups has some small, but visible, effects on
the effective potential (see e.g. data for the two couples “gap
4” in Figure a). We assert that this small effect will vanish for long polymers
because pairs of segments interacting intra- or intermolecularly will
sample a huge amount of local sequences within the scale of an interacting
segment, so that averaging over the local sequences for a fixed nmin will always lead to the same effective potential,
irrespective of the specific realization of the full sequence. On
the other hand, we expect that the dependence on nmin will persist for long polymers because nmin affects to the typical intra- and intermolecular distances
between reactive groups (e.g., a larger nmin leads to longer intramolecular loops on average, which tend to increase
steric repulsion).Figure shows that
when intermolecular bonding is switched on (filled symbols), the effective
potentials experience a marked reduction with respect to the case
of pure intramolecular bonding. Interestingly, the effect of the sequence
of reactive sites when intermolecular bonds are allowed is the opposite
to that found when they are not: increasing the distance between consecutive
reactive sites decreases the effective interaction. As a consequence,
the periodic sequences of reactive groups lead to the strongest reductions
of the effective potential when intermolecular bonding is switched
on (with differences of ΔβVeff(r = 0) ∼ −3 and −5 for linear–linear
and ring–ring interactions, respectively).The analysis
of the number of bonds can shed some light on the
origin of the former trends for the effective potentials. The average
total number of bonds (intra- and intermolecular) is ntot ≈ 17 in all systems, i.e., 85% of the maximum ntot = 20 that would correspond to the fully
bonded state. No differences are found within statistics, and this
observation is independent of the topology of the precursor, the sequence
of reactive sites, the distance between the centers-of-mass, and intermolecular
bonding being switched on or off. Although the total number of bonds
is unaffected, varying the former parameters leads to a different
balance between intra- and intermolecular bonds. Figure shows, for the cases of Figure (same symbol codes),
the variation of the number of intermolecular bonds, ninter, with the distance between the centers-of-mass of
the two polymers. The number of intermolecular bonds increases by
moving from gap 1 to periodic sequences, i.e., by increasing the distance
between consecutive reactive sites. Because increasing such a distance
eliminates the shortest intramolecular loops, the observed conservation
of the average total number of bonds is achieved by exchanging the
shortest loops by longer ones or by forming more intermolecular bonds.
The second option is preferred, as shown by Figure . Figure S9 shows
the distribution of instantaneous values of ninter at distance r1,2 = 3σ.
As can be seen, ninter can fluctuate in
a broad range from 0 to 8–12 bonds, and the distribution becomes
more symmetric with decreasing randomness of the sequence of reactive
sites.
Figure 6
Symbols: as Figure for the number of intermolecular bonds vs the distance between centers-of-mass.
Lines (same color codes as symbols): difference between the effective
potentials without and with intermolecular bonding.
Symbols: as Figure for the number of intermolecular bonds vs the distance between centers-of-mass.
Lines (same color codes as symbols): difference between the effective
potentials without and with intermolecular bonding.Because the effective potential Veff(r) is the free energy cost of changing the mutual
distance from infinity to r, the difference between
the effective potentials without and with intermolecular bonding is
ΔβVeff(r)
= βVeff,only intra(r) – βVeff,all bonds(r) = βΔU(r) – kB–1ΔS(r), with ΔU(r) and
ΔS(r) the corresponding energetic
and entropic changes. For the same pair of polymers, switching intermolecular
bonding on or off should not change excluded volume interactions significantly,
and as mentioned before, it does not affect the total number of bonds.
Therefore, ΔU(r) ≈
0, and the difference between the effective potentials without and
with intermolecular bonding is essentially of entropic origin, i.e.,
ΔβVeff(r)
≈ −kB–1ΔS(r). Figure shows (lines) the corresponding data for ΔβVeff(r). Because this quantity is positive
for all distances, it is clear that forming intermolecular bonds involves
an entropic gain with respect to the only intramolecularly bonded
system. In principle, intermolecular bonds limit conformational and
translational fluctuations, leading to an entropic loss. Therefore,
there should be a source of entropic gain that exceeds the former
loss, resulting in a net entropic gain when intermolecular bonds are
formed. As can be seen in Figure , the net entropic gain is qualitatively given by kB times the number of intermolecular bonds;
i.e., the number of additional states of the pair of polymers that
are introduced by intermolecular bonding is essentially the exponential
of the number of intermolecular bonds.The mechanism leading
to the observed entropic gain is not clear.
The concept of combinatorial entropy,[44] accounting for the different connectivities of the bonding network,
has been invoked to accurately describe a similar effect in the case
of hard nanoparticles grafted by chains with sticky ends. An expression
has been proposed for the number of bonding patterns that can be produced
by the sticky ends that can, at each distance, potentially bind to
the other nanoparticle.[45] Though it is
plausible that the combinatorial entropy is a major contribution to
the ΔβVeff shown in Figure , obtaining an analytical
accurate expression for our system is highly nontrivial[46] and is beyond the scope of this work.On the other hand, as can be seen by comparing Figures and 6, increasing
the number of intermolecular bonds leads to lowering
the effective potential. This is consistent with the fact that Veff(r)/kBT = −ln g(r), with g(r) the radial
distribution of the centers-of-mass.[26] A
higher number of intermolecular bonds leads to more tightly linked
pairs, resulting in higher values of g(r) at short distances and, through the negative dependence, to lower
values of Veff(r)/kBT. A similar trend should
be found by increasing the total number of bonds (and concomitantly
the intermolecular ones) through rising the ratio of the bond to the
thermal energy.
Crowded Solutions and Phase
Behavior
The main motivation behind the coarse-graining approach
is to reduce
as much as possible the degrees of freedom that define the system.
Deriving the expression of an effective potential Veff able to mimic the interactions between macromolecules
enables the description of them only in terms of a few coordinates
(usually the centers-of-mass). Thus, in a dense system as a crowded
solution the degrees of freedom associated with the individual monomers
are wiped out and the whole solution is effectively described as a
fluid of particles interacting through the obtained Veff. This strategy largely reduces the computational cost
of the all-monomer simulations, allows to investigate longer time
and length scales, and facilitates the applications of methods from
e.g. liquid state theory. However, it involves a strong assumption;
namely, because the effective potential has been derived for two polymers
in the absence of others, its use implicitly neglects the effective
many-body interactions in the crowded solution. In general, this approximation
is justified and works well for densities below the overlap concentration,
but it fails, even severely, as one goes deep in the semidilute and
concentrated regimes.[26] A well-known effect
of the many-body interactions in dense solutions is the shrinkage
found in simple linear chains, leading to the change from self-avoiding
to Gaussian chain statistics.[21]Recent
simulations of solutions of reversibly cross-linking linear
chains similar to those investigated here have shown, interestingly,
that the polymer size and shape are weakly affected by the concentration,
essentially retaining the conformational properties of high dilution.[20] Instead of shrinking, the chains keep such mean
conformations through forming a few intermolecular bonds with their
neighbors. This weak effect of the concentration on the molecular
conformations suggests that the many-body interactions experienced
by a tagged couple of chains are in a first approximation given by
a flat energy landscape. In such conditions the effective potential
derived at high dilution may provide a good description of the structural
properties of the solution even far above the overlap concentration.Figure shows the
radii of gyration, normalized by their values at ρ = 0, as a
function of the normalized concentration ρ/ρ* for the
linear chains and rings with reversible bonds, both in the pure systems
and in the linear/ring mixture. The results for the pure linear case
confirm those of the model of ref (20), with a shrinkage of just 4% at about 7 times
the overlap concentration. A much steeper dependence on the concentration
is found for the case of rings, with a shrinkage of 15% at the highest
simulated concentration of about 4 times the overlap concentration
(for comparison, at the same effective density the shrinkage of the
linear chains is <2%). This very different response of the molecular
size of linear chains and rings to crowding is also found in the mixture
of both molecules, though differences are less pronounced than in
the pure systems. In the mixture the size of the linear chains shows
a steeper dependence on the concentration than in the pure system,
whereas the rings show the opposite effect. Having said this, in all
cases the shrinkage is much weaker that in the absence of bonding.
Solid symbols in Figure are the values for the unbonded precursors at the highest effective
densities of the bonded counterparts. Such values have been estimated
through the power laws Rg/Rg0 ∼ (ρ/ρ*)−1/8 (linear
chains[21]) and Rg/Rg0 ∼ (ρ/ρ*)−1/4 (unentangled rings[47]). Shrinkage factors of 22% (linear) and 30% (ring) vs the respective
aforementioned values of 4% and 15% are obtained, demonstrating the
dramatic effect of intermolecular bonding on reducing the impact of
crowding on the molecular conformations.
Figure 7
Radius of gyration Rg normalized by
its value at high dilution Rg0 as a function
of the effective density for the pure solutions of linear chains and
rings with reversible bonds and for the 50/50 mixture of both polymers.
For comparison, we add the values for the linear and ring precursors
(no bonding) estimated at the highest simulated concentrations of
their bonded counterparts (see text for explanation).
Radius of gyration Rg normalized by
its value at high dilution Rg0 as a function
of the effective density for the pure solutions of linear chains and
rings with reversible bonds and for the 50/50 mixture of both polymers.
For comparison, we add the values for the linear and ring precursors
(no bonding) estimated at the highest simulated concentrations of
their bonded counterparts (see text for explanation).Beyond the effect of the concentration on the molecular size,
the
scattering form factor provides more detailed information about the
molecular conformations. The form factor is calculated aswhere r = |r – r|; the
sum is performed over
all pairs of monomers j, k belonging
to the same polymer and is averaged over all the polymers in the solution
and different configurations. Figure shows for both linear and ring architectures the form
factor at high dilution and at the highest investigated concentration.
As q grows, the form factor shows the crossover from
the limit w(q = 0) = Nm to the fractal regime,[21]w(q) ∼ q–1/ν, which originates from the scaling of the intramolecular distances
with the contour length. Similar to the overall molecular size, we
find a tiny effect of crowding on the effective exponent of the linear
chains, which changes from ν = 0.58 to 0.54 from high dilution
to ρ/ρ* ∼ 7, i.e., a narrow range between the Flory
value (ν = 0.59) for self-avoiding chains and ν = 1/2
for Gaussian chains. The more pronounced effect of crowding on the
molecular size of rings is also reflected in the scaling behavior,
with a change from ν = 0.44 at high dilution to ν = 0.35
at ρ/ρ* ∼ 4, resembling crumpled globule behavior[22,23] (ν = 1/3). Similar trends are found in the 50/50 mixture of
linear chains and rings. Consistently with the observations for the
molecular size, the conformations of the linear chains in the mixture
are slightly more affected by crowding than in the pure system, and
the opposite effect is found for the rings.
Figure 8
Form factors for linear
chains (a, b) and rings (c, d) with reversible
bonds at two densities far below and far above the overlap concentration.
Panels (a, c) and (b, d) correspond to the pure systems and to the
mixture, respectively. Lines are fits in the fractal regime to power
laws of the form w(q) ∼ q–1/ν.
Form factors for linear
chains (a, b) and rings (c, d) with reversible
bonds at two densities far below and far above the overlap concentration.
Panels (a, c) and (b, d) correspond to the pure systems and to the
mixture, respectively. Lines are fits in the fractal regime to power
laws of the form w(q) ∼ q–1/ν.In summary, Figures and 8 show that the typical conformations
of the linear chains are weakly distorted by crowding, and hence the
two-body approximation under which the effective potential is derived
might work reasonably even at unusually high densities, far above
the overlap concentration. Comparatively, crowding has a stronger
effect on the conformations of the rings, and their effective potential
is expected to work in a narrower range of concentrations than in
their linear counterparts. In what follows we test these expectations
by comparing the results for the all-monomer solutions with those
for the corresponding effective fluids. Moreover, we test the validity
of mean-field DFT in our systems through calculations from test particle
route (TPR). As mentioned in section , all the simulated solutions correspond to sequences
of type “gap 1”. The interactions in the all-monomer
simulations are given by eqs –4. The data for the corresponding
effective potentials of Figure were fitted by the functions of Table , and these functions were used in the simulations
and TPR calculations of the effective fluids. Namely, the “linear–linear,
all bonds” and the “ring–ring, all bonds”
potentials were used in the effective fluids of the pure (one-component)
systems of linear and ring polymers with reversible bonds. They were
also used for the linear–linear and ring–ring interactions
in the effective linear–ring mixture, while the “linear–ring,
all bonds” potential was used for the linear–ring interactions.
In the mixture (A/B) of linear chains with orthogonal chemistry, the
“linear–linear, all bonds” potential was used
for the A–A and B–B interactions. Because by construction
there were no intermolecular A–B bonds in the all-monomer simulations,
the “linear–linear, only intra” potential was
used for the A–B interactions in the effective fluid.Figure shows the
radial distribution function g(r) of the centers-of-mass in the pure solutions of linear chains with
reversible bonds. Figure a compares the correlations for the centers-of-mass of the
real all-monomer (AM) system with those for the particles of the effective
fluid (EF). Figure b compares the results for the effective fluid with the calculations
from TPR. An excellent agreement between effective fluid and TPR is
obtained, demonstrating the validity of the mean-field approximation
for the effective fluid even at low densities. The comparison between
the all-monomer and effective fluid reveals some interesting trends.
Contrary to the usual observations in macromolecular systems, the
effective potential provides a very good description of the real system
at ρ/ρ* > 5, i.e., far above the overlap concentration,
where many-body effects are usually expected. This finding confirms
that the many-body effects are basically averaged out and lead to
a flat energy landscape. Again contrary to the usual observations,
there are systematic differences between the all-monomer and effective
fluid at densities below the overlap concentration, even at values
as low as ρ/ρ* ∼ 0.1, for which one might expect
an excellent accuracy of the two-body approximation. As can be seen
in Figure a, the g(r) for the all-monomer system is shifted
to longer distances, indicating less interpenetration than predicted
by the effective fluid. The reason for this small but significant
disagreement is likely the significant number of clusters of three
polymers found at low concentrations in the real system. Figure S10 shows the cluster size distribution P(n) at the lowest investigated concentration,
where n is the number of polymers in a cluster and
two polymers belong to a same cluster if they are mutually linked
by at least one intermolecular bond. As can be seen, the ratio of
clusters of n = 3 vs those of n =
2 is non-negligible (about 0.1). In these clusters (which do not exist
in simple systems with no bonds) the three-body interaction cannot
be oversimplified by a flat landscape, and the two-body approximation
just gives a semiquantitative description of the static correlations.
Figure 9
Radial
distribution function of solutions of linear chains with
reversible bonds, in a broad range of densities from high dilution
to far above the overlap concentration. Panel (a) compares the results
for the molecular centers-of-mass in the all-monomer simulations (AM,
full symbols) with the results for the particles of the effective
fluid simulations (EF, empty symbols). Panel (b) compares the EF simulations
with the theoretical predictions of the test particle route (TPR,
lines).
Radial
distribution function of solutions of linear chains with
reversible bonds, in a broad range of densities from high dilution
to far above the overlap concentration. Panel (a) compares the results
for the molecular centers-of-mass in the all-monomer simulations (AM,
full symbols) with the results for the particles of the effective
fluid simulations (EF, empty symbols). Panel (b) compares the EF simulations
with the theoretical predictions of the test particle route (TPR,
lines).Results for the solutions of rings
with reversible bonds are shown
in Figure . In comparison
with the linear case, the all-monomer rings show a larger correlation
hole and therefore a weaker interpenetration. This is consistent with
the observed stronger response of their conformations to crowding
(Figures and 8), which leads to objects similar to crumpled globules
(ν ∼ 1/3) and therefore less penetrable than their linear
counterparts (ν ∼ 0.5). Although at low concentrations
there is still a systematic small disagreement between the g(r) of the effective fluid and the all-monomer
system, this effect is weaker than for the linear counterparts. This
is consistent with the smaller number of three-body clusters found
for the rings (Figure S10). In this case
the ratio of n = 3 vs n = 2 clusters
is about 0.05. For concentrations higher than ρ/ρ* the
effective fluid provides a much worse description than in the linear
system, and indeed the all-monomer solution of rings does not show
the peak at r = 0 found in the effective fluid. In
a similar fashion to the simple case of rings without bonds, the peak
formed at r = 0 and growing with the concentration
is the signature of a fluid of clusters formed by strongly interpenetrated
particles. The effective fluid will ultimately show a transition to
a cluster crystal phase, where the clusters are arranged in the nodes
of a regular lattice that is sustained through incessant hopping of
the particles between the clusters. The existence of cluster crystal
phases is predicted within mean-field DFT for potentials that are
bounded and show negative values in their Fourier transform.[48] Both conditions are fulfilled by the effective
potentials of the rings with reversible bonds. Indeed, they can be
described by generalized exponential functions (Table ), which for exponents higher than 2 have
negative Fourier components.[33] Moreover,
the mean-field approximation is justified, as can be seen in Figure b by the good agreement
between the TPR and the simulations of the effective fluid. However,
the cluster fluid is not found in the all-monomer system. As found
for simple rings without bonding interactions,[35] the preferred crumpled globular conformations prevent the
degree of nesting and threading needed to form the characteristic
peak at r = 0.
Figure 10
As Figure for
the solutions of rings with reversible bonds.
As Figure for
the solutions of rings with reversible bonds.Figure shows
the partial correlations of the radial distribution function for the
50/50 ring–linear mixture. As in Figures and 10 the left column
compares AM and EF simulations, whereas the right column compares
the EF simulations with the predictions of TPR. The top panels (a,
b) display the partial correlations between the linear chains, gll(r). The middle panels (c,
d) show the cross-correlations (linear–ring, glr(r)), and the correlations between
the rings (grr(r)) are
displayed in the bottom panels (e, f). At low and moderate concentrations,
the small but systematic deviations between the AM and EF for the
linear–linear correlations in the mixture are similar to those
found in the pure system. However, whereas at large concentrations
(ρ/ρ* > 4) there is a very good agreement between the
AM simulations and EF in the pure linear system, significant differences
are observed in the mixture. This suggests that the picture of an
effective flat energy landscape describing the many-body interactions
in the pure linear system is an oversimplification when the linear
neighbors are partially substituted by rings adopting less penetrable
crumpled globular conformations and hence leading to an heterogeneous
landscape. This is consistent with the found deviations between the
EF and TPR (see panel (b)), in contrast to the excellent agreement
observed in the pure system. The description of the ring–ring
AM correlations by the effective potentials is improved in the mixture
with respect to the pure solutions. Indeed, the presence of a 50%
of particles (representing the linear chains) in the EF interacting
through Gaussian potentials (which do not lead to cluster phases)
reduces the tendency to the cluster phase of the particles representing
the rings, and the EF becomes closer to the real system where no peak
at r = 0 is found. On the other hand, the TPR provides
a worse description of the ring–ring correlations in the EF
of the mixture than in the EF of the pure system of rings. Again,
this might be related to the structural heterogeneity of the EF of
the mixture that worsens the mean-field approach of TPR, though surprisingly,
TPR does provide a very good description of the cross-correlations
(linear–ring) in the EF. A reasonably good agreement is also
found between the cross-correlations in the AM and EF systems. The
results for the cross-correlations in panel (c) show a good mixing
of the linear chains and rings with reversible bonds, with no signatures
of segregation or incoming phase separation. Indeed, the correlation
holes are just intermediate between those for the self-correlations.
Figure 11
Radial
distribution function of the 50/50 mixture of linear chains
and rings with reversible bonds. Panels (a, c, e) compare results
for the AM and EF simulations. Panels (b, d, f) compare the EF simulations
with the predictions of TPR. Panels (a, b), (c, d), and (e, f) show
such comparisons for the partial linear–linear, linear–ring,
and ring–ring correlations, respectively.
Radial
distribution function of the 50/50 mixture of linear chains
and rings with reversible bonds. Panels (a, c, e) compare results
for the AM and EF simulations. Panels (b, d, f) compare the EF simulations
with the predictions of TPR. Panels (a, b), (c, d), and (e, f) show
such comparisons for the partial linear–linear, linear–ring,
and ring–ring correlations, respectively.Finally, we push further our investigation on the validity of effective
potentials to describe correlations in crowded solutions of polymers
with reversible bonds. Our last question is whether it is possible
in our model to form interpenetrated networks (IPNs) from two polymers
with reversible bonds and orthogonal chemistry. For this purpose,
we consider a linear binary mixture with the same fraction x = 50% for both components. As mentioned before, in the
all-monomer simulations the WCA, FENE, and reversible bonding interactions
are identical for both components, with the only difference that intermolecular
bonding is switched off between chains of different components. In
the effective fluid, the interactions between particles of the same
component are the same as in the EF of the pure linear case (“linear–linear,
all bonds” in Table ), whereas for the cross-interactions we use the effective
potentials derived in the absence of intermolecular bonding (“linear–linear,
only intra”). To have a first idea of the emerging scenario
for this system, we obtain the theoretical phase diagram for the effective
fluid in the plane of reduced concentration (ρ/ρ*) vs
composition (0 ≤ x ≤ 1) of the mixture
using the random phase approximation for the partial correlations
as a closure to the Ornstein–Zernike relation.[29,42,49,50] This should be a reasonable approximation on the basis of the observed
quality of the mean-field TPR. We find a spinodal line (dashed line
in Figure ) attesting
to the existence of a region with macrophase separation (demixing)
which, because self-interactions for both components are identical,
becomes symmetric with respect to the composition. Forming a pair
of interpenetrated networks (IPN) first requires percolation of both
components of the mixture, which does not occur if the composition
is very asymmetric. On the other hand, we find that, except for very
asymmetric compositions, the system demixes when the density is increased
slightly above the overlap concentration. Because the onset of network
percolation occurs at such concentrations or above them,[20] the theoretical phase diagram of Figure suggests that it is not possible
to form an IPN in the mixture of chains with reversible bonds, this
being frustrated by the demixing of both components.
Figure 12
Theoretical phase diagram
(reduced concentration ρ/ρ*
vs composition) for the binary mixture of linear chains with orthogonal
reversible bonds The dashed and thick lines are the spinodal and binodal
lines, respectively. The thin straight lines join the coexistence
points.
Theoretical phase diagram
(reduced concentration ρ/ρ*
vs composition) for the binary mixture of linear chains with orthogonal
reversible bonds The dashed and thick lines are the spinodal and binodal
lines, respectively. The thin straight lines join the coexistence
points.Figure shows
AM and EF simulation snapshots at different concentrations for the
50/50 mixture of linear chains with reversible bonds and orthogonal
chemistry. The beads represent the monomers and the effective particles
in the AM and EF systems, respectively. By depiction of the two components
with different colors, demixing (which as anticipated in section occurs spontaneously
by evolution from an initially mixed state) is evident and confirms
the expectation from the theoretical phase diagram. This is quantitatively
reflected in the partial components of the total static structure
factor of the molecular centers-of-mass, Sαβ(q), where α, β refer to the components
(1,2) of the mixture, so that S11(q) and S22(q) represent correlations within a same component and S12(q) represents cross-correlations between
chains of different components. These quantities are calculated asIn
this equation Nα is the number of
relevant coordinates of the α-component in
the simulation box (the molecular centers-of-mass in the AM and all
the effective particles in the EF), and rα denotes the coordinate of the jth molecule of the
α-component. The average is performed over several realizations
of the box and different runs at the same concentration. The total
structure factor, S(q), accounting
for all the correlations without distinguishing components of the
mixture, is just obtained by running the sum over all pairs of coordinates
in the box (irrespective of their respective components) and normalizing
the sum by the inverse of the total of number molecules NA + NB. Figure shows the total S(q) (panel (a)) and the partial components Sαβ(q) (panels (b–d))
of the molecular centers-of-mass in the AM system. It should be noted
that because the composition is equimolar and the self-interactions
of the two components are identical, S11(q) = S22(q). No signatures of growing length scales are observed in the total S(q), which shows the typical behavior
of a homogeneous fluid with increasing the concentration. The growing
length scales of the two separating phases are evidenced by the growing
peaks of the partial S11(q) = S22(q) at q → 0, with the corresponding anticorrelation for S12(q).
Figure 13
Snapshots from the all
monomers simulations (upper row) and the
effective fluid simulations (bottom row) at different concentrations
of the binary mixture of linear chains with orthogonal chemistry of
bonding. The beads represent the actual monomers (21600 in total)
in the AM case and the effective ultrasoft particles (1000) in the
EF. Molecules belonging to different components of the mixture are
represented by different colors. Demixing is evident in both the AM
and EF simulations.
Figure 14
Total (a) and partial
static structure factors (b–d) of
the centers-of-mass in the AM binary mixture of linear chains with
reversible bonds and orthogonal chemistry. Because the fraction and
the self-interactions of each component are identical, S11(q) = S22(q).
Snapshots from the all
monomers simulations (upper row) and the
effective fluid simulations (bottom row) at different concentrations
of the binary mixture of linear chains with orthogonal chemistry of
bonding. The beads represent the actual monomers (21600 in total)
in the AM case and the effective ultrasoft particles (1000) in the
EF. Molecules belonging to different components of the mixture are
represented by different colors. Demixing is evident in both the AM
and EF simulations.Total (a) and partial
static structure factors (b–d) of
the centers-of-mass in the AM binary mixture of linear chains with
reversible bonds and orthogonal chemistry. Because the fraction and
the self-interactions of each component are identical, S11(q) = S22(q).Phase separation has
been found in a simplified mixture where all
nonbonded and bonded interactions are identical, with the only constraint
that intermolecular bonds between different components of the mixture
are not allowed. A more realistic model should at least introduce
different activation energies for the two kinds of orthogonal reactive
sites. This would likely break the symmetry of the phase diagram with
respect to the mixture composition, but the qualitative emerging scenario
(demixing and impossibility of forming the IPN in equilibrium) is
robust. Indeed, demixing is inherently connected to the more repulsive
character of the cross-interactions than of the self-interactions.
Introducing different bond activation energies will lead to different
bonding probabilities and hence different self-interactions of the
two components, but the cross-interaction should still be much more
repulsive than the self-interactions because, as discussed in section , the latter contain
the combinatorial entropic gain associated with intermolecular bonding,
this being absent between polymers of different components of the
mixture. Having said this, there is plenty of evidence in the literature
on formation of IPNs with purely reversible cross-links.[51−55] Our results suggests that such IPNs are kinetically trapped states.
The typical activation energies of the dynamic bonds in these IPNs
are of several hundreds of kJ/mol,[55] i.e.,
of the order of 100kBT, whereas in our simulations they are about 10kBT. Moreover the experimental chains are much
longer than the unentangled chains used here (the entanglement monomer
density for our linear precursors is[20] ρe ≳ 0.42σ–3). Thus, our results
suggest that in real systems the combination of both high molecular
weights and long lifetimes of the bonds creates large barriers impeding
relaxation to the equilibrium demixed state, and the IPNs (created
in out-of-equilibrium conditions) remain stable.
Conclusions
We have systematically investigated effective potentials between
polymeric molecules functionalized with groups that can form intra-
and intermolecular reversible bonds. A rich scenario emerges for the
dependence of the effective potential on the relevant control parameters.
In spite of the additional complexity introduced by the high number
of instantaneous intramolecular loops originated by the reversible
cross-links, the topological interaction of the unbonded precursor
(linear or ring) still has a dominant contribution in the bonded state,
leading to very different strengths of the effective interaction (being
more repulsive for the ring-based system). Even if the molecular weight
and the fraction of reactive sites are fixed, the effective potentials
exhibit a significant dependence on the degree of randomness of the
sequence of reactive sites (from fully random to periodic). If the
reactive sites of the two polymers are orthogonal, so that only intramolecular
bonds are formed, decreasing randomness leads to longer intramolecular
loops, which hinders interpenetrability and leads to a stronger effective
intermolecular repulsion. The opposite effect is found if reactive
sites of both polymers are identical and both intra- and intermolecular
bonding occur. We suggest that the free energy loss caused by the
intermolecular bonds is mainly given by combinatorial entropy arising
from the exponential number of bonding patters that the two intermolecularly
bonded polymers can adopt.We have explored the accuracy of
the effective potentials to describe
the equilibrium correlations between centers-of-mass in the crowded
solutions. In the case of the linear chains a very good agreement
between the effective fluid and the all-monomer simulations is found
ever far above the overlap concentration. This is consistent with
the fact that shrinking is highly prevented by forming intermolecular
bonds with neighboring chains, which makes the conformations at high
dilution weakly sensitive to crowding, and many-body effects basically
contribute as a flat energy landscape. In a similar fashion to the
case of rings with no bonds, the comparison with the effective fluid
is less satisfactory in the system of rings with reactive sites, which
does not show the cluster phase predicted by the effective fluid.
This is consistent with the crowding-driven collapse to crumpled globule-like
conformations, reflecting the relevance of the many-body interactions.
We have further extended our investigation to a 50/50 mixture of the
former types of polymers. The results for the partial correlations
are qualitatively similar to those of the pure polymers and the system
is fully miscible.Finally, we have explored the possibility
of forming two interpenetrated
networks in a linear–linear mixture where the reactive sites
of the two components are orthogonal; i.e., intermolecular bonds only
occur between chains of the same component. In agreement with the
energetic penalty found for the effective cross-interaction potential,
the simulations of the effective fluid, and the phase diagram obtained
by the test particle route, no interpenetrated networks are found,
and the two components demix. This result suggests that real interpenetrated
networks, where the lifetimes of the reversible bonds are much longer
than in our simulations, are kinetically trapped states with large
entropic barriers impeding the relaxation to the equilibrium demixed
state (arrested demixing). Our results may motivate future experimental
tests in mixtures of oligomers with low bond energies. On the other
hand, an interesting problem to address in the future is the accuracy
of the effective fluid approach in dual networks, where both types
of orthogonal reactive sites are present in all the chains, including
the determination of the phase behavior in mixtures with different
fractions of both sites in each component. Another future line of
research would be to improve the description of the real system through
the incorporation of additional degrees of freedom. A promising approach[56] is to introduce an intermediate pair potential
that depends on the instantaneous values of the intermolecular distance
and of the two molecular sizes. The latter are coupled to the density
of the solution through the equations of motion, leading to an effective
potential (averaged over the size distribution) that becomes density
dependent. Work in these directions is in progress.
Authors: Angel J Moreno; Federica Lo Verso; Arantxa Arbe; José A Pomposo; Juan Colmenero Journal: J Phys Chem Lett Date: 2016-02-23 Impact factor: 6.475
Authors: Elizabeth M Foster; Erin E Lensmeyer; Borui Zhang; Progyateg Chakma; Jacob A Flum; Jeremy J Via; Jessica L Sparks; Dominik Konkolewicz Journal: ACS Macro Lett Date: 2017-04-14 Impact factor: 6.903
Authors: Marco Hebel; Jasmina Gačanin; Thorsten Lückerath; David Y W Ng; Tanja Weil Journal: Macromol Rapid Commun Date: 2021-09-13 Impact factor: 5.734
Authors: A Pia P Kröger; Muhabbat I Komil; Naomi M Hamelmann; Alberto Juan; Martina H Stenzel; Jos M J Paulusse Journal: ACS Macro Lett Date: 2018-12-18 Impact factor: 6.903