Literature DB >> 28083792

Three-body potential for simulating bond swaps in molecular dynamics.

Francesco Sciortino1.   

Abstract

Novel soft matter materials join the resistance of a permanent mesh of strong inter-particle bonds with the self-healing and restructuring properties allowed by bond-swapping processes. Theoretical and numerical studies of the dynamics of coarse-grained models of covalent adaptable networks and vitrimers require effective algorithms for modelling the corresponding evolution of the network topology. Here I propose a simple trick for performing molecular dynamics simulations of bond-swapping network systems with particle-level description. The method is based on the addition of a computationally non-expensive three-body repulsive potential that encodes for the single-bond per particle condition and establishes a flat potential energy surface for the bond swap.

Keywords:  Tips and Tricks

Year:  2017        PMID: 28083792     DOI: 10.1140/epje/i2017-11496-5

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  11 in total

1.  How to simulate patchy particles.

Authors:  Lorenzo Rovigatti; John Russo; Flavio Romano
Journal:  Eur Phys J E Soft Matter       Date:  2018-05-14       Impact factor: 1.890

2.  Understanding, predicting, and tuning the fragility of vitrimeric polymers.

Authors:  Simone Ciarella; Rutger A Biezemans; Liesbeth M C Janssen
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-25       Impact factor: 11.205

3.  Internal structure and swelling behaviour of in silico microgel particles.

Authors:  Lorenzo Rovigatti; Nicoletta Gnan; Emanuela Zaccarelli
Journal:  J Phys Condens Matter       Date:  2018-01-31       Impact factor: 2.333

4.  Unfolding of the chromatin fiber driven by overexpression of noninteracting bridging factors.

Authors:  Isha Malhotra; Bernardo Oyarzún; Bortolo Matteo Mognetti
Journal:  Biophys J       Date:  2021-01-14       Impact factor: 4.033

5.  Effect of Chain Polydispersity on the Elasticity of Disordered Polymer Networks.

Authors:  Valerio Sorichetti; Andrea Ninarello; José M Ruiz-Franco; Virginie Hugouvieux; Walter Kob; Emanuela Zaccarelli; Lorenzo Rovigatti
Journal:  Macromolecules       Date:  2021-04-14       Impact factor: 5.985

6.  Influence of Binding Site Affinity Patterns on Binding of Multivalent Polymers.

Authors:  Emiko Zumbro; Alfredo Alexander-Katz
Journal:  ACS Omega       Date:  2020-05-06

Review 7.  Numerical modelling of non-ionic microgels: an overview.

Authors:  Lorenzo Rovigatti; Nicoletta Gnan; Letizia Tavagnacco; Angel J Moreno; Emanuela Zaccarelli
Journal:  Soft Matter       Date:  2019-02-06       Impact factor: 3.679

8.  In Silico Synthesis of Microgel Particles.

Authors:  Nicoletta Gnan; Lorenzo Rovigatti; Maxime Bergman; Emanuela Zaccarelli
Journal:  Macromolecules       Date:  2017-10-18       Impact factor: 5.985

9.  Modelling realistic microgels in an explicit solvent.

Authors:  F Camerin; N Gnan; L Rovigatti; E Zaccarelli
Journal:  Sci Rep       Date:  2018-09-26       Impact factor: 4.379

10.  Modeling Microgels with a Controlled Structure across the Volume Phase Transition.

Authors:  Andrea Ninarello; Jérôme J Crassous; Divya Paloli; Fabrizio Camerin; Nicoletta Gnan; Lorenzo Rovigatti; Peter Schurtenberger; Emanuela Zaccarelli
Journal:  Macromolecules       Date:  2019-10-01       Impact factor: 5.985

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