Literature DB >> 26894933

Concentrated Solutions of Single-Chain Nanoparticles: A Simple Model for Intrinsically Disordered Proteins under Crowding Conditions.

Angel J Moreno1,2, Federica Lo Verso2, Arantxa Arbe1, José A Pomposo1,3,4, Juan Colmenero1,2,3.   

Abstract

By means of large-scale computer simulations and small-angle neutron scattering (SANS), we investigate solutions of single-chain nanoparticles (SCNPs), covering the whole concentration range from infinite dilution to melt density. The analysis of the conformational properties of the SCNPs reveals that these synthetic nano-objects share basic ingredients with intrinsically disordered proteins (IDPs), as topological polydispersity, generally sparse conformations, and locally compact domains. We investigate the role of the architecture of the SCNPs in their collapse behavior under macromolecular crowding. Unlike in the case of linear macromolecules, which experience the usual transition from self-avoiding to Gaussian random-walk conformations, crowding leads to collapsed conformations of SCNPs resembling those of crumpled globules. This behavior is already found at volume fractions (about 30%) that are characteristic of crowding in cellular environments. The simulation results are confirmed by the SANS experiments. Our results for SCNPs--a model system free of specific interactions--propose a general scenario for the effect of steric crowding on IDPs: collapse from sparse conformations at high dilution to crumpled globular conformations in cell environments.

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Year:  2016        PMID: 26894933     DOI: 10.1021/acs.jpclett.6b00144

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  4 in total

1.  Influence of network defects on the conformational structure of nanogel particles: From "closed compact" to "open fractal" nanogel particles.

Authors:  Alexandros Chremos; Ferenc Horkay; Jack F Douglas
Journal:  J Chem Phys       Date:  2022-03-07       Impact factor: 3.488

2.  Molecular dynamics study of the swelling and osmotic properties of compact nanogel particles.

Authors:  Alexandros Chremos; Jack F Douglas; Peter J Basser; Ferenc Horkay
Journal:  Soft Matter       Date:  2022-08-24       Impact factor: 4.046

3.  A method to estimate the size of single-chain nanoparticles under severe crowding conditions.

Authors:  Isabel Asenjo-Sanz; Ester Verde-Sesto; José A Pomposo
Journal:  RSC Adv       Date:  2022-01-10       Impact factor: 3.361

4.  Validity of Effective Potentials in Crowded Solutions of Linear and Ring Polymers with Reversible Bonds.

Authors:  Mariarita Paciolla; Christos N Likos; Angel J Moreno
Journal:  Macromolecules       Date:  2022-03-24       Impact factor: 6.057

  4 in total

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