| Literature DB >> 35424332 |
K Uma Priya1, Ch Venkataramaiah2,3, N Y Sreedhar1, C Naga Raju1.
Abstract
A series of new sulphonamide and carbamate derivatives of Nebivolol drug intermediate (5) were designed and synthesized by reacting various biopotent sulphonylchlorides and chloroformates. The synthesized compounds are structurally characterized by spectral (IR, 1H & 13C NMR and mass) and screened for their in vitro antimicrobial activity against four bacterial and three fungal strains, in vitro and in vivo antiinflammatory activity against LPS-induced inflammation in RAW 264.7, in vitro COX-1 and COX-2 inhibition potentiality, antagonistic profiles of carrageenan induced paw edema and cotton pellet induced granuloma in rat. Further, the compounds were screened for their antimicrobial and antiinflammatory activity against DNA gyrase A, COX-1 and COX-2 by using molecular docking approach. The bioactivity and toxicity risks were analysed through Molecular Operating Environment. The results revealed that the compounds 8b, 8c, 8d, 8e, 8f, 8g and 9a exhibited the most promising antimicrobial activity against all the bacterial and fungal strains tested when compared with the standard drugs streptomycin and fluconazole. In view of in antiinflammatory activity, the compounds, 8b, 8c, 8d, 8e, 8f, 8g and 9a have shown potent antiinflammatory activity by inhibiting the LPS-induced inflammation in RAW 264.7 cell line, concentration dependent inhibition of COX-1 and COX-2, dose response dependent antagonism of carrageenan induced paw edema and granuloma tissue in rat. Molecular docking, ADMET and QSAR studies predicted that the recorded in silico profiles are in strong correlation with in vitro and in vivo antimicrobial and antiinflammatory results. In addition, the elevated toxicology risks of the title compounds are identified with in the potential limits of drug candidates. Hence, it is suggested that the synthesized derivatives will stand as the promising antimicrobial and anti-inflammatory drug candidates in future. This journal is © The Royal Society of Chemistry.Entities:
Year: 2021 PMID: 35424332 PMCID: PMC8694313 DOI: 10.1039/d0ra08905b
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 3.361
Fig. 1A few of the selective β1-blockers.
Fig. 2Three dimensional structures of target proteins and reference compounds.
Scheme 1Synthetic route for the synthesis of sulphonamide and carbamate derivatives of Nebivolol intermediate (8a–g & 9a–d).
Physical data of the title compounds
| Comp. | Structure | Time (h) | Yield (%) | Melting point (°C) | Purity profile |
|---|---|---|---|---|---|
| 8a |
| 3.5 | 82 | 167–170 | 96% |
| 8b |
| 2.5 | 84 | 195–198 | 90% |
| 8c |
| 4 | 82 | 132–135 | 91% |
| 8d |
| 3.5 | 84 | 126–129 | 89% |
| 8e |
| 4 | 79 | 155–158 | 89% |
| 8f |
| 3 | 81 | 135–138 | 93% |
| 8g |
| 3.5 | 80 | 134–137 | 94% |
| 9a |
| 4 | 79 | 132–135 | 89% |
| 9b |
| 3.5 | 82 | 167–170 | 92% |
| 9c |
| 3 | 78 | 126–129 | 94% |
| 9d |
| 4 | 74 | 132–135 | 86% |
In vitro antimicrobial activity of the sulphonamide and carbamate derivatives of Nebivolol intermediate (8a–g & 9a–d)
| Compound | MIC in μg mL−1 | |||
|---|---|---|---|---|
|
|
|
|
| |
| Streptomycin | 25.40 ± 0.48 | 18.64 ± 1.07 | 26.40 ± 1.12 | 28.18 ± 0.80 |
| 8a | 31.60 ± 1.03 | 21.88 ± 0.33 | 30.14 ± 0.72 | 31.88 ± 1.04 |
| 8b | 15.08 ± 0.08 | 17.88 ± 0.61 | 12.68 ± 0.87 | 22.42 ± 0.40 |
| 8c | 21.60 ± 0.44 | 19.66 ± 0.62 | 17.12 ± 0.47 | 22.18 ± 0.63 |
| 8d | 18.30 ± 0.21 | 17.44 ± 0.40 | 24.17 ± 0.72 | 27.40 ± 0.65 |
| 8e | 19.66 ± 0.36 | 20.42 ± 0.62 | 26.26 ± 0.28 | 26.72 ± 0.88 |
| 8f | 16.22 ± 0.94 | 19.88 ± 0.66 | 24.06 ± 1.02 | 26.84 ± 0.55 |
| 8g | 14.32 ± 0.27 | 10.22 ± 0.52 | 12.06 ± 0.36 | 18.46 ± 0.12 |
| 9a | 20.49 ± 0.76 | 16.56 ± 0.35 | 21.70 ± 1.06 | 19.48 ± 1.25 |
| 9b | 25.98 ± 0.42 | 20.32 ± 0.06 | 21.14 ± 0.45 | 30.36 ± 0.22 |
| 9c | 26.08 ± 0.30 | 19.04 ± 1.08 | 22.72 ± 0.26 | 28.81 ± 0.60 |
| 9d | 27.66 ± 0.44 | 18.08 ± 0.80 | 27.22 ± 0.92 | 31.66 ± 0.88 |
In vitro antifungal activity of the sulphonamide and carbamate derivatives of Nebivolol intermediate (8a–g & 9a–d)
| Compound | MIC in μg mL−1 | ||
|---|---|---|---|
|
|
|
| |
| Fluconazole | 19.40 ± 0.17 | 18.38 ± 0.32 | 22.32 ± 0.45 |
| 8a | 22.32 ± 0.27 | 23.06 ± 0.25 | 22.80 ± 0.54 |
| 8b | 20.40 ± 0.87 | 17.81 ± 0.16 | 20.21 ± 0.65 |
| 8c | 18.10 ± 0.46 | 16.72 ± 0.70 | 22.22 ± 0.83 |
| 8d | 15.30 ± 0.15 | 17.04 ± 0.70 | 18.65 ± 0.65 |
| 8e | 11.71 ± 0.35 | 14.08 ± 0.55 | 16.64 ± 0.52 |
| 8f | 15.66 ± 0.69 | 16.18 ± 0.82 | 19.04 ± 0.20 |
| 8g | 14.06 ± 0.72 | 15.18 ± 0.80 | 14.36 ± 0.66 |
| 9a | 11.20 ± 1.08 | 12.66 ± 0.80 | 14.18 ± 0.69 |
| 9b | 24.72 ± 0.70 | 23.81 ± 0.67 | 19.24 ± 0.48 |
| 9c | 19.32 ± 0.47 | 19.81 ± 0.37 | 25.56 ± 0.48 |
| 9d | 28.46 ± 0.14 | 25.20 ± 0.66 | 31.28 ± 0.45 |
Fig. 3Cytotoxic effect of title compounds during the treatment with different concentrations in RAW 264.7 macrophage cell lines.
Fig. 4Anti-inflammatory effects of title compounds with different concentrations during the pre-treatment in LPS-induced inflammation in RAW 264.7 macrophage cell lines.
Fig. 5Inhibition of NO production by title compounds and celecoxib with different concentrations in LPS-stimulated RAW 264.7 macrophages.
In vitro COX-1 and COX-2 enzyme inhibitory activities of title compounds (8a–g & 9a–d)
| Compound | % inhibition of COX | |||
|---|---|---|---|---|
| COX-1 | COX-2 | |||
| 100 μM | 200 μM | 100 μM | 200 μM | |
| 8a | 37.30 ± 0.32 | 45.52 ± 0.77 | 23.53 ± 0.55 | 38.64 ± 0.33 |
| 8b | 46.10 ± 0.22 | 68.78 ± 0.43 | 34.43 ± 0.66 | 60.04 ± 0.24 |
| 8c | 51.08 ± 0.62 | 70.07 ± 0.70 | 40.40 ± 0.10 | 61.20 ± 0.72 |
| 8d | 53.88 ± 0.30 | 69.64 ± 0.18 | 39.32 ± 0.77 | 63.88 ± 0.46 |
| 8e | 48.42 ± 0.84 | 71.55 ± 0.15 | 35.55 ± 0.22 | 57.72 ± 0.36 |
| 8f | 33.87 ± 1.06 | 73.85 ± 0.54 | 28.70 ± 0.07 | 52.08 ± 0.78 |
| 8g | 47.69 ± 0.63 | 71.08 ± 0.16 | 39.92 ± 0.51 | 67.60 ± 0.73 |
| 9a | 50.66 ± 0.33 | 75.33 ± 0.14 | 18.06 ± 0.88 | 52.42 ± 0.21 |
| 9b | 43.08 ± 0.80 | 69.02 ± 0.50 | 37.70 ± 0.35 | 63.60 ± 0.32 |
| 9c | 39.60 ± 0.08 | 51.64 ± 0.32 | 24.30 ± 0.20 | 41.66 ± 0.23 |
| 9d | 41.40 ± 0.62 | 52.16 ± 0.30 | 29.73 ± 0.75 | 38.59 ± 0.29 |
| Celecoxib | 46.52 ± 0.40 | 68.07 ± 0.50 | 31.60 ± 0.44 | 51.32 ± 0.17 |
The determination was performed in triplicate for two independent experiments.
Anti-inflammatory activity of the title compounds against the carrageenan-induced paw edema in rats with different time intervalsa
| Compound | Dose (mg kg−1 p.o.) | Paw volume (mL) | ||
|---|---|---|---|---|
| 1 h | 3 h | 6 h | ||
| Control | — | 0.42 ± 0.40 | 0.38 ± 0.14 | 0.40 ± 0.60 |
| Carrageenan | — | 0.94 ± 0.15## | 1.17 ± 0.22## | 1.69 ± 0.84# |
| 8b | 100 | 0.52 ± 0.18* | 0.80 ± 0.38** | 1.06 ± 0.27* |
| 8c | 100 | 0.60 ± 0.64** | 0.88 ± 0.31** | 1.11 ± 0.13** |
| 8d | 100 | 0.78 ± 0.88* | 1.08 ± 0.40* | 1.50 ± 0.64* |
| 8e | 100 | 0.68 ± 0.96* | 0.74 ± 0.29* | 1.19 ± 0.65* |
| 8f | 100 | 0.62 ± 0.10** | 0.86 ± 0.32* | 1.10 ± 0.13* |
| 8g | 100 | 0.65 ± 0.20* | 0.77 ± 0.28** | 1.20 ± 0.38** |
| 9a | 100 | 0.72 ± 0.72* | 1.06 ± 0.52* | 1.56 ± 0.33* |
| 9b | 100 | 0.76 ± 0.48* | 0.88 ± 0.16** | 1.50 ± 0.25* |
| Celecoxib | 100 | 0.80 ± 0.50** | 0.98 ± 0.92* | 1.58 ± 0.22** |
*Each value is the mean ± SEM for six rats. #p < 0.05, ##p < 0.01 when compared with normal control group. **p < 0.01, *p < 0.05 when compared with carrageenan control group.
Effect of test compounds on cotton pellet induced granuloma in ratsa
| Treatment and dose (100 mg kg−1, p.o.) | Weight (mg) mean ± SEM | |
|---|---|---|
| Wet | Dry | |
| Control | 250.30 ± 1.48 | 123.30 ± 1.48 |
| 8b | 182.50 ± 1.77*# | 84.10 ± 1.67*# |
| 8c | 148.62 ± 1.85*## | 91.30 ± 1.72*# |
| 8e | 152.40 ± 1.57*## | 76.45 ± 1.95*## |
| 8f | 139.82 ± 2.42*## | 70.66 ± 2.33*## |
| 8g | 190.90 ± 1.84*# | 78.42 ± 2.04*# |
| Celecoxib | 150.14 ± 3.46** | 78.80 ± 3.24** |
**p < 0.01, *p < 0.05 when compared with normal control group. ##p < 0.01, #p < 0.05 when compared with standard group.
Bioactivity & toxicity risk of the title compounds (8a–8g and 9a–9d)a
| Structure | Bioactivity | Toxicity risks | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GPCRL | ICM | KI | NRL | PI | EI | MUT | TUMO | IRRI | REP | DL | DS | ||
| 8a |
| 0.22 | −0.18 | −0.36 | −0.03 | 0.28 | 0.04 | − | − | − | + | −6.0 | 0.38 |
| 8b |
| 0.18 | 0.10 | −0.43 | 0.06 | 0.31 | 0.08 | − | − | − | − | −9.4 | 0.56 |
| 8c |
| 0.47 | 0.17 | 0.21 | 0.09 | 0.30 | 0.08 | − | − | − | − | −8.9 | 0.62 |
| 8d |
| 0.41 | 0.11 | 0.23 | 0.10 | 0.27 | 0.05 | − | − | − | − | −9.2 | 0.70 |
| 8e |
| 0.20 | 0.24 | 0.12 | 0.13 | 0.33 | 0.12 | − | − | − | − | −9.3 | 0.82 |
| 8f |
| 0.29 | 0.27 | 0.10 | 0.08 | 0.31 | 0.11 | − | − | − | − | −9.2 | 0.84 |
| 8g |
| 0.31 | −0.20 | −0.13 | 0.08 | 0.27 | 0.14 | − | − | − | − | −9.0 | 0.92 |
| 9a |
| 0.27 | 0.17 | −0.08 | 0.21 | 0.23 | 0.06 | − | − | − | − | −8.8 | 0.91 |
| 9b |
| 0.38 | 0.19 | −1.02 | 0.23 | 0.21 | 0.07 | − | − | − | + | −8.8 | 0.88 |
| 9c |
| 0.64 | −0.21 | −1.21 | −0.03 | 0.15 | 0.07 | − | − | − | − | −6.1 | 0.37 |
| 9d |
| 0.26 | −0.38 | −1.30 | −0.04 | 0.12 | 0.05 | − | − | − | − | −5.8 | 0.29 |
| Cel. |
| −0.63 | −0.49 | −1.42 | −1.48 | −0.79 | −0.09 | − | − | − | + | −6.3 | 0.42 |
GPCRL: G protein-coupled receptor ligand; ICM: ion channel modulator; KI: kinase inhibitor; NRL: nuclear receptor ligand; PI: protease inhibitor; EI: enzyme inhibitor; MUT: mutagenic; TUMO: tumorigenic; IRRI: irritant; REP: reproductive effect [a dash (−) indicates no effect (+) indicates the effect]; DL: drug likeness; DS: drug score.
Predicted ADMET profiles of the title compounds (8a–g and 9a–d)
| Com. | BBB | Caco2 | PPB | MDCK | HIA% | Toxicity |
|---|---|---|---|---|---|---|
| Rule | >0.40 | 4–70 | >90 | 25–500 | 20–100 | Negative |
| 8a | 0.394438 | 15.49632 | 70.650233 | 25.10452 | 46.184572 | Negative |
| 8b | 0.846620 | 60.36412 | 95.854201 | 31.65632 | 79.564202 | Negative |
| 8c | 0.798246 | 71.55320 | 97.664402 | 38.48920 | 88.624180 | Negative |
| 8d | 0.557214 | 65.43210 | 95.366320 | 43.56974 | 83.554630 | Negative |
| 8e | 0.974248 | 80.42152 | 92.187240 | 51.69202 | 80.968742 | Negative |
| 8f | 0.881146 | 82.36421 | 97.320045 | 60.45325 | 73.568940 | Negative |
| 8g | 0.955226 | 78.99124 | 91.664025 | 66.45872 | 73.202145 | Negative |
| 9a | 0.687236 | 69.10145 | 85.366240 | 59.88724 | 81.664524 | Negative |
| 9b | 0.421078 | 14.64320 | 68.442052 | 14.65234 | 66.387552 | Negative |
| 9c | 0.604482 | 22.74322 | 88.924210 | 55.46320 | 70.338564 | Negative |
| 9d | 0.388460 | 15.32104 | 68.361450 | 14.02520 | 50.345892 | Negative |
| Celecoxib | 0.271436 | 13.56965 | 38.972004 | 22.82750 | 45.302456 | Negative |
QSAR profiles of the title compounds (8a–g and 9a–d)a
| Com. | Lipinski Assets | Veber Assets | Other Assets | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MW | HD | HA | log | MR | L Vio. | TPSA | RB | V Vio. | HP | VV | D | Solu. | |
| Rule | <500 | <5 | <10 | <5 | <100 | <1 | <140 | <10 | <1 | 5–20 | 100–300 | 1–2 | −1 to −5 |
| 8a | 370.0 | 4 | 6 | 2.80 | 53.62 | 0 | 130.44 | 5 | 0 | 16 | 140.6 | 1.62 | −1.23 |
| 8b | 326.4 | 5 | 6 | 2.10 | 94.10 | 0 | 120.36 | 5 | 0 | 19 | 288.6 | 1.44 | −3.45 |
| 8c | 388.1 | 5 | 6 | 1.89 | 97.24 | 0 | 115.42 | 5 | 0 | 19 | 246.6 | 1.30 | −4.18 |
| 8d | 431.0 | 5 | 6 | 1.62 | 91.32 | 0 | 110.08 | 6 | 0 | 17 | 244.8 | 1.28 | −4.66 |
| 8e | 296.4 | 5 | 6 | 1.05 | 90.72 | 0 | 108.46 | 6 | 0 | 19 | 238.4 | 1.26 | −4.10 |
| 8f | 338.3 | 5 | 6 | 1.44 | 93.14 | 0 | 101.88 | 6 | 0 | 18 | 224.5 | 1.36 | −3.98 |
| 8g | 401.1 | 5 | 6 | 2.04 | 93.58 | 0 | 100.05 | 6 | 0 | 18 | 278.9 | 1.40 | −3.76 |
| 9a | 269.1 | 5 | 6 | 1.30 | 92.77 | 0 | 103.84 | 5 | 0 | 18 | 268.1 | 1.14 | −4.22 |
| 9b | 363.0 | 4 | 6 | 3.02 | 63.78 | 0 | 132.56 | 6 | 0 | 13 | 122.6 | 1.50 | −1.02 |
| 9c | 312.0 | 5 | 6 | 1.88 | 95.62 | 0 | 120.64 | 6 | 0 | 17 | 280.4 | 1.12 | −4.66 |
| 9d | 283.1 | 5 | 6 | 3.72 | 60.14 | 0 | 138.60 | 5 | 0 | 11 | 128.0 | 1.58 | −1.56 |
| Celecoxib | 381.3 | 4 | 5 | 2.89 | 46.23 | 0 | 128.42 | 5 | 0 | 9 | 132.7 | 1.66 | 0.18 |
MW: molecular weight; HD: hydrogen bond donors; HA: hydrogen bond acceptors; log P: octanol to water partition coefficient; MR: molecular refractivity (cm3 mol−1); L Vio: Lipinski violations; TPSA: total polar surface area; RB: number of rotatable bonds; V Vio: Veber violations; HP: number of hydrophobic atoms; VV: van der Waals volume; D: density (g cm3); Solu.: solubility.
Binding characteristics of synthesized compounds (8a–8g and 9a–9d) and references against DNA gyrase A protein
| Com. | BE | Binding interaction | Bond length(Å) | Bond angle (°) | Bond type |
|---|---|---|---|---|---|
| Streptomycin | −6.9 | Arg 139 CG⋯HN | 2.2 | 124.4 | H–don |
| Leu 135 CD⋯HN | 2.7 | 125.7 | H–don | ||
| His 132 CB⋯OH | 2.5 | 125.0 | H–acc | ||
| Asp 53 CG⋯OC | 3.4 | 116.7 | H–acc | ||
| Asp 53 OC⋯OC | 2.9 | 118.9 | H–acc | ||
| Asp 58 OD⋯OH | 2.0 | 118.6 | H–acc | ||
| Asp 58 OD⋯HN | 2.5 | 116.4 | H–don | ||
| His 132 ND⋯OC | 2.8 | 126.2 | H–acc | ||
| His 132 ND⋯OC | 2.7 | 120.0 | H–acc | ||
| His 132 OC⋯OH | 2.5 | 119.8 | H–acc | ||
| Norfloxacin | –7.3. | Leu 264 CA⋯OC | 2.0 | 114.7 | H–acc |
| 8a | –6.0 | Tyr 266 CZ⋯HN | 2.2 | 119.9 | H–don |
| Thr 171 CA⋯HO | 2.2 | 114.6 | H–don | ||
| Asn 169 OC⋯HN | 2.5 | 120.7 | H–don | ||
| 8b | −8.2 | Ser 111 CA⋯ OC | 2.3 | 122.5 | H–acc |
| Arg 91 CZ⋯ OS | 2.2 | 119.0 | H–acc | ||
| Asn 169 OC⋯HN | 2.2 | 118.4 | H–acc | ||
| 8c | −8.1 | Arg 47 CZ⋯OS | 2.3 | 119.4 | H–acc |
| Arg 47 NE⋯OC | 2.2 | 116.2 | H–acc | ||
| Arg 47 NE⋯OC | 2.6 | 118.9 | H–acc | ||
| Arg 47 CZ⋯OC | 2.3 | 120.4 | H–acc | ||
| Tyr 77 CA⋯HO | 2.6 | 118.7 | H–don | ||
| Tyr 77 CA⋯HN | 2.2 | 122.0 | H–don | ||
| 8d | −8.0 | Gln 94 CD⋯OH | 2.2 | 124.1 | H–acc |
| Gln 94 CD⋯OC | 2.0 | 118.4 | H–acc | ||
| Arg 91 CZ⋯OC | 2.6 | 119.1 | H–acc | ||
| 8e | −8.5 | Arg 91 CZ⋯ON | 2.3 | 121.8 | H–acc |
| Gln 267 CA⋯ON | 2.7 | 114.3 | H–acc | ||
| Gin 94 CD⋯OC | 2.2 | 118.4 | H–acc | ||
| Asp115 CA⋯HO | 2.3 | 124.2 | H–don | ||
| Ser 111 CG⋯HO | 2.4 | 122.5 | H–don | ||
| Ser 111 OC⋯HN | 2.1 | 123.1 | H–don | ||
| Asg 269 HD⋯OS | 2.7 | 120.3 | H–acc | ||
| 8f | −8.4 | Arg 91 CZ⋯OC | 2.9 | 120.8 | H–acc |
| Arg 91 CZ⋯OC | 2.3 | 119.0 | H–acc | ||
| Asn 269 CG⋯OS | 2.4 | 122.3 | H–acc | ||
| 8g | −8.8 | Arg 91 CZ⋯OS | 2.1 | 119.0 | H–acc |
| Arg 91 CZ⋯OS | 2.8 | 121.8 | H–acc | ||
| Gln 94 CD⋯OC | 2.3 | 118.4 | H–acc | ||
| Ser 111 HN⋯OC | 2.2 | 116.0 | H–acc | ||
| Asp 115 CA⋯HO | 1.7 | 120.6 | H–don | ||
| 9a | −8.3 | Gly 114 CA⋯OS | 2.8 | 112.3 | H–acc |
| Ser 111 OC⋯HO | 2.3 | 120.4 | H–don | ||
| Ser 111 HN⋯OC | 2.4 | 122.5 | H–acc | ||
| Gln 94 CD⋯OC | 2.3 | 118.4 | H–acc | ||
| 9b | −6.5 | Met 301 CA⋯OC | 2.1 | 115.2 | H–acc |
| His 262 CA⋯HN | 2.1 | 121.2 | H–don | ||
| Leu 264 CA⋯OC | 2.1 | 114.7 | H–acc | ||
| Thr 219 CA⋯HO | 2.0 | 119.9 | H–don | ||
| 9c | −6.5 | Met 301 HN⋯OC | 2.3 | 115.2 | H–acc |
| Leu 264 HN⋯OC | 2.1 | 114.7 | H–acc | ||
| 9d | −6.6 | Arg 91 CZ⋯OC | 2.5 | 119.0 | H–acc |
| Arg 91 CZ⋯OC | 2.7 | 119.0 | H–acc | ||
| Gln 94 NE⋯OC | 2.1 | 118.4 | H–acc | ||
| Ser 111 CA⋯OC | 2.3 | 116.2 | H–acc | ||
| Ser 111 CA⋯HO | 2.2 | 120.4 | H–don |
Binding characteristics of synthesized compounds (8a–8g and 9a–9d) and references against COX-1 protein
| Compound | BE | Bonding interaction | Bond length(Å) | Bond angle (°) | Bond type |
|---|---|---|---|---|---|
| Celecoxib | −7.4. | Leu 324 CB⋯HN | 2.5 | 91.3 | H–don |
| Arg 37 CA⋯OS | 2.4 | 103.1 | H–acc | ||
| 8a | −6.3 | Gly 536 CZ⋯HO | 2.8 | 130.7 | H–don |
| 8b | −8.5 | Arg 376 CZ⋯OS | 2.2 | 89.7 | H–acc |
| Arg 376 CZ⋯OS | 2.1 | 90.3 | H–acc | ||
| Arg 374 CB⋯OS | 2.4 | 93.8 | H–acc | ||
| Arg 374 CB⋯OC | 2.1 | 99.3 | H–acc | ||
| 8c | −8.7 | Arg 376 CZ⋯OS | 2.2 | 110.3 | H–acc |
| Arg 376 CB⋯OS | 2.3 | 91.8 | H–acc | ||
| Arg 374 CB⋯OS | 2.1 | 107.0 | H–acc | ||
| Arg 374 CB⋯OH | 2.2 | 121.8 | H–acc | ||
| 8d | −8.0 | Arg 376 CA⋯OS | 2.3 | 113.2 | H–acc |
| Arg 376 CB⋯OS | 2.2 | 100.7 | H–acc | ||
| Arg 374 CB⋯OS | 2.3 | 109.3 | H–acc | ||
| Arg 374 CZ⋯OH | 2.2 | 121.0 | H–acc | ||
| 8e | −9.0 | Arg 376 CZ⋯OS | 2.7 | 88.7 | H–acc |
| Arg 376 CB⋯OS | 2.1 | 71.0 | H–acc | ||
| Arg 374 CB ⋯.OS | 2.1 | 137.7 | H–acc | ||
| Arg 374 CZ⋯ON | 2.2 | 118.7 | H–acc | ||
| 8f | −9.4 | Arg 376 CZ⋯OS | 2.3 | 120.3 | H–acc |
| Arg 376 CB⋯OS | 2.7 | 118.7 | H–acc | ||
| Arg 374 CB⋯OS | 2.14 | 127.0 | H–acc | ||
| 8g | −8.7 | Arg 376 CZ⋯OS | 2.6 | 94.6 | H–acc |
| Arg 376 CB⋯OS | 2.4 | 80.7 | H–acc | ||
| Arg 374 CB⋯OS | 2.3 | 98.1 | H–acc | ||
| Arg 374 CZ⋯OC | 2.0 | 97.8 | H–acc | ||
| 9a | −8.7 | Arg 374 CB⋯OS | 2.5 | 120.7 | H–acc |
| Arg 374 CZ⋯OS | 2.2 | 96.3 | H–acc | ||
| Arg 374 CB⋯OS | 2.1 | 81.8 | H–acc | ||
| Arg 376 CZ⋯ON | 2.6 | 120.1 | H–acc | ||
| Arg 376 CB⋯ON | 2.3 | 118.5 | H–acc | ||
| Ser 143 CA⋯HO | 2.1 | 91.1 | H–don | ||
| 9b | −6.9 | Arg 376 CB⋯OC | 2.5 | 133.1 | H–acc |
| 9c | −7.4 | Arg 374 CB⋯OC | 2.3 | 91.6 | H–acc |
| 9d | −7.0 | Arg 376 CZ⋯OC | 2.6 | 93.5 | H–acc |
Binding characteristics of synthesized compounds (8a–8g and 9a–9d) and references against COX-2 protein
| Compound | BE | Bonding interaction | Bond length(Å) | Bond angle (°) | Bond type |
|---|---|---|---|---|---|
| Celecoxib | −7.2. | Lys 235 CZ⋯HN | 2.4 | 118.3 | H–don |
| 8a | −5.6 | Arg 293 CB⋯OH | 2.5 | 108.8 | H–acc |
| Asn 556 CZ⋯HN | 2.7 | 112.7 | H–don | ||
| 8b | −8.7 | Asn 268 CB⋯OS | 2.6 | 100.3 | H–acc |
| 8c | −9.4 | Gly 310 CB⋯ON | 2.6 | 119.3 | H–acc |
| Gln 313 CB⋯OS | 2.4 | 101.0 | H–acc | ||
| 8d | −8.6 | Asn 268 CB⋯OC | 2.6 | 86.1 | H–acc |
| Asn 268 CA⋯OS | 2.2 | 106.3 | H–acc | ||
| 8e | −9.0 | Asn 268 CB⋯OS | 2.1 | 91.1 | H–acc |
| Asn 268 CA⋯OC | 2.7 | 104.7 | H–acc | ||
| Arg 414 CZ⋯ON | 2.5 | 116.0 | H–acc | ||
| 8f | −8.5 | Asp 143 CA⋯OC | 2.4 | 117.9 | H–acc |
| Asp 143 CZ⋯OC | 2.6 | 104.9 | H–acc | ||
| 8g | −8.6 | Asn 567 CA⋯OS | 2.5 | 66.7 | H–acc |
| Asn 567 CZ⋯OS | 2.2 | 78.4 | H–acc | ||
| Gln 336 CZ⋯OC | 2.6 | 90.3 | H–acc | ||
| Gln 336 CZ⋯HO | 1.9 | 98.7 | H–don | ||
| 9a | −8.0 | Asp 143 CB⋯OH | 2.3 | 89.9 | H–acc |
| 9b | −8.7 | Asn 556 CZ⋯HN | 2.2 | 99.7 | H–don |
| 9c | −7.1 | Ser 457 CB⋯HN | 2.6 | 120.0 | H–don |
| 9d | −7.3 | Asn 556 CZ⋯OC | 2.2 | 117.3 | H–acc |