| Literature DB >> 35423449 |
Pengfei Wang1,2, Babayemi O Oladejo1,3, Chenning Li1,2, Lifeng Fu1,4, Shanshan Zhang1, Jianxun Qi1,2, Xun Lv1, Xuebing Li1,2,4.
Abstract
Resistant viruses containing mutant neuraminidases (NAs) with diminished drug affinity continue to emerge, and new anti-influenza agents are urgently required. Several potent inhibitors targeting the hydrophobic 150-cavity of viral NAs have been developed by modifying the antiviral drugs, oseltamivir carboxylate (OSC) and zanamivir, with hydrophobic groups. Here, we describe a different strategy for exploring novel and efficient NA inhibitors by targeting the charged amino acid residues around the entrance to the 150-cavity. We synthesized a C5-substituted OSC derivative (1e) with a 4'-phenyl-1,2,3-triazolyl group capable of entering the 150-cavity, and solved the crystal structure of 1e in complex with influenza A virus N5 NA. Using the resulting structural information, we next designed and synthesized two series of OSC derivatives carrying various polar substituents at the triazolyl group of 1e and 2e, with 2e being a 5'-phenyl-1,2,3-triazole regioisomer of 1e. The NA inhibition assays demonstrated that the 2 series (2e-n) generally had superior activity compared with the 1 series (1e-n). Compound 2j, bearing a 3-phenylamino group on the triazole ring, was the most potent inhibitor of all tested NAs including an N2 NA containing the E119V OSC-resistant mutation. Moreover, 2j potently inhibited viral replication in vitro, and molecular docking studies revealed that its phenylamino group can form an additional strong hydrogen bond with residue D151 near the entrance of the 150-cavity. The design method described in this study provides useful insights into the development of novel NA inhibitors. Compound 2j warrants further structural optimization to obtain a candidate for clinical use. This journal is © The Royal Society of Chemistry.Entities:
Year: 2021 PMID: 35423449 PMCID: PMC8696196 DOI: 10.1039/d1ra00472g
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 3.361
Fig. 1Comparison of the crystal structures of representative group 1 and group 2 neuraminidases. (A) N1 virus with an open 150-loop (PDB code: 6HP0);[25] (B) N2 virus with a closed 150-loop (PDB code: 4GZP);[26] (C) N2 virus with an open 150-loop induced by oseltamivir carboxylate (PDB code: 4K1K).[18]
Fig. 2Design approach and structural basis of the target neuraminidase (NA) inhibitors. (A) Design of the 1,2,3-triazolylated oseltamivir carboxylate (OSC) derivatives. (B) The X-ray crystal structure of compound 1e in complex with the N5 NA. The 4′-phenyl-1,2,3-triazolyl group can enter the 150-cavity. (C) Key interactions (hydrogen bond interactions) of 1e in complex with the N5 NA. The main structure (OSC scaffold) interacts with the active site in a manner similar to that of the binding pattern of OSC but without the additional strong interaction involving the phenyl group. Polar interactions are represented by dashed lines. Other interactions are not indicated. The residues involved in direct hydrogen bonds with the ligand are represented with sticks. (D) Comparison of the conformation of 1e (orange) and 2e (green) within the N5 NA crystal structure based on molecular docking experiments. Compound 2e could maintain a conformation similar to that of 1e and its phenyl group was closer to the acidic residues (cyan) and basic residues (yellow) near the entrance of the 150-cavity. The oxygen and nitrogen atoms of the compounds are colored red and blue, respectively.
IC50 values (μM) of the target compounds based on the neuraminidase inhibition assay
|
| ||||
|---|---|---|---|---|
| Compound | R | IC50 | ||
| N5 (H12N5) | N2 (H3N2) | mutN2(H3N2 E119V) | ||
| 1a |
| >100 | >100 | — |
| 1b |
| >100 | >100 | — |
| 1c |
| 1.66 ± 0.25 | 3.80 ± 0.65 | — |
| 1d |
| 2.85 ± 1.28 | 4.41 ± 1.11 | — |
| 1e |
| 12.93 ± 1.57 | 11.55 ± 3.19 | 20.63 ± 2.97 |
| 2e | 5.34 ± 0.45 | 3.38 ± 0.58 | 15.96 ± 1.95 | |
| 1f |
| 8.14 ± 1.12 | 2.83 ± 0.73 | 17.67 ± 7.05 |
| 2f | 3.92 ± 0.69 | 1.27 ± 0.12 | 6.53 ± 1.31 | |
| 1g |
| 29.51 ± 8.00 | 11.76 ± 2.04 | >100 |
| 2g | 2.04 ± 0.99 | 0.58 ± 0.14 | 25.62 ± 4.41 | |
| 1h |
| 61.15 ± 23.70 | 21.17 ± 6.45 | >100 |
| 2h | 0.57 ± 0.13 | 0.30 ± 0.063 | >100 | |
| 1i |
| >100 | >100 | >100 |
| 2i | 0.25 ± 0.044 | 0.63 ± 0.13 | 23.28 ± 4.38 | |
| 1j |
| 3.60 ± 0.82 | 1.54 ± 0.23 | 1.52 ± 0.26 |
| 2j |
|
|
| |
| 1k |
| 0.52 ± 0.13 | 0.67 ± 0.12 | 4.06 ± 0.75 |
| 2k | 0.41 ± 0.047 | 0.56 ± 0.16 | 3.26 ± 0.45 | |
| 1l |
| 0.74 ± 0.18 | >100 | >100 |
| 2l | 0.14 ± 0.016 | 0.29 ± 0.047 | 9.26 ± 0.91 | |
| 1m |
| >100 | >100 | >100 |
| 2m | >100 | >100 | >100 | |
| 1n |
| 6.95 ± 0.47 | 1.98 ± 0.33 | >100 |
| 2n | 2.43 ± 0.33 | 0.30 ± 0.088 | 26.68 ± 9.16 | |
| OSC | n/a | 0.00094 ± 0.0003 | 0.00050 ± 0.00009 | 0.012 ± 0.004 |
Concentration required to reduce neuraminidase activity to 50% of the control activity (IC50). Values are shown as the mean ± SD of three experiments.
N5 from H12N5 A/Duck/Alberta/60/1976.
H3N2 (A/Moscow/10/99).
H3N2 (A/Moscow/10/99) with E119V mutation.
—: not tested.
Scheme 1Synthesis of target compounds. Reagents and conditions: (a) sodium ascorbate, aq CuSO4, THF/H2O (3 : 1), 45 °C, 6–12 h, 68–98%; (b) Cp*RuCl(PPh3)2, THF, 60 °C, 12–24 h, 29–89%; (c) aq NaOH, MeOH, rt, 6–12 h, 55–81%; (d) (i) aq NaOH, MeOH, rt, 6–12 h; (ii) TFA/DCM (1 : 1), rt, 3–4 h, 72–79%.
Anti-influenza virus activity and cytotoxicity of 2j and oseltamivir carboxylate (OSC)
| Compounds | EC50 (μM) | CC50 | ||
|---|---|---|---|---|
| H1N1 | H3N2 | H3N2 E119V | ||
| 2j | 11.53 ± 2.69 | 7.65 ± 0.70 | >100 | >500 |
| OSC | 0.25 ± 0.081 | 0.43 ± 0.080 | >100 | >500 |
EC50 refers to the concentration required to achieve 50% protection against virus-induced cytopathic effect. All the assays were performed in quadruplicate and the results are reported as the mean ± SD.
CC50 refers to the concentration of 50% cellular toxicity.
A/Puerto Rico/8/1934; H3N2, A/Moscow/10/99; H3N2 E119V, and A/Moscow/10/99H3N2 background containing an E119V mutation in the neuraminidase gene.
At 100 μM, the inhibition rates were 24.6% for 2j and 44.1% for OSC, respectively.
Fig. 3Comparison of the binding modes and interactions of 5′-substituted 1,2,3-triazolylated OSC derivatives (green) and their 4′-isomers (orange) with N5 neuraminidase. (A and B) Overlay of N5-1j with N5-2j; (C and D) Overlay of N5-1h and N5-2h. Polar interactions are represented by dashed lines (green for the 2 series and orange for the 1 series). Other interactions are not shown. The residues involved in direct hydrogen bonds with the ligand are represented with sticks. The oxygen and nitrogen atoms of the compounds are colored red and blue, respectively.