Literature DB >> 35383317

The genetic architecture underlying body-size traits plasticity over different temperatures and developmental stages in Caenorhabditis elegans.

Muhammad I Maulana1, Joost A G Riksen1, Basten L Snoek1,2, Jan E Kammenga3, Mark G Sterken4.   

Abstract

Most ectotherms obey the temperature-size rule, meaning they grow larger in a colder environment. This raises the question of how the interplay between genes and temperature affects the body size of ectotherms. Despite the growing body of literature on the physiological life-history and molecular genetic mechanism underlying the temperature-size rule, the overall genetic architecture orchestrating this complex phenotype is not yet fully understood. One approach to identify genetic regulators of complex phenotypes is quantitative trait locus (QTL) mapping. Here, we explore the genetic architecture of body-size phenotypes, and plasticity of body-size phenotypes at different temperatures using Caenorhabditis elegans as a model ectotherm. We used 40 recombinant inbred lines (RILs) derived from N2 and CB4856, which were reared at four different temperatures (16, 20, 24, and 26 °C) and measured at two developmental stages (L4 and adult). The animals were measured for body length, width at vulva, body volume, length/width ratio, and seven other body-size traits. The genetically diverse RILs varied in their body-size phenotypes with heritabilities ranging from 0.0 to 0.99. We detected 18 QTL underlying the body-size traits across all treatment combinations, with the majority clustering on Chromosome X. We hypothesize that the Chromosome X QTL could result from a known pleiotropic regulator-npr-1-known to affect the body size of C. elegans through behavioral changes. We also found five plasticity QTL of body-size traits where three colocalized with body-size QTL. In conclusion, our findings shed more light on multiple loci affecting body-size plasticity and the possibility of co-regulation of traits and traits plasticity by the same loci under different environments.
© 2022. The Author(s), under exclusive licence to The Genetics Society.

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Year:  2022        PMID: 35383317      PMCID: PMC9076863          DOI: 10.1038/s41437-022-00528-y

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.832


  50 in total

1.  Genome-wide gene expression regulation as a function of genotype and age in C. elegans.

Authors:  Ana Viñuela; L Basten Snoek; Joost A G Riksen; Jan E Kammenga
Journal:  Genome Res       Date:  2010-05-20       Impact factor: 9.043

2.  Temperature-dependent developmental plasticity of Drosophila neurons: cell-autonomous roles of membrane excitability, Ca2+ influx, and cAMP signaling.

Authors:  I-Feng Peng; Brett A Berke; Yue Zhu; Wei-Hua Lee; Wenjia Chen; Chun-Fang Wu
Journal:  J Neurosci       Date:  2007-11-14       Impact factor: 6.167

3.  Efficient control of population structure in model organism association mapping.

Authors:  Hyun Min Kang; Noah A Zaitlen; Claire M Wade; Andrew Kirby; David Heckerman; Mark J Daly; Eleazar Eskin
Journal:  Genetics       Date:  2008-03       Impact factor: 4.562

Review 4.  The laboratory domestication of Caenorhabditis elegans.

Authors:  Mark G Sterken; L Basten Snoek; Jan E Kammenga; Erik C Andersen
Journal:  Trends Genet       Date:  2015-03-21       Impact factor: 11.639

5.  Gene expression modifications by temperature-toxicants interactions in Caenorhabditis elegans.

Authors:  Ana Viñuela; L Basten Snoek; Joost A G Riksen; Jan E Kammenga
Journal:  PLoS One       Date:  2011-09-09       Impact factor: 3.240

6.  A Caenorhabditis elegans wild type defies the temperature-size rule owing to a single nucleotide polymorphism in tra-3.

Authors:  Jan E Kammenga; Agnieszka Doroszuk; Joost A G Riksen; Esther Hazendonk; Laurentiu Spiridon; Andrei-Jose Petrescu; Marcel Tijsterman; Ronald H A Plasterk; Jaap Bakker
Journal:  PLoS Genet       Date:  2007-01-09       Impact factor: 5.917

7.  Temporal dynamics of gene expression in heat-stressed Caenorhabditis elegans.

Authors:  Katharina Jovic; Mark G Sterken; Jacopo Grilli; Roel P J Bevers; Miriam Rodriguez; Joost A G Riksen; Stefano Allesina; Jan E Kammenga; L Basten Snoek
Journal:  PLoS One       Date:  2017-12-11       Impact factor: 3.240

8.  Ras/MAPK Modifier Loci Revealed by eQTL in Caenorhabditis elegans.

Authors:  Mark G Sterken; Linda van Bemmelen van der Plaat; Joost A G Riksen; Miriam Rodriguez; Tobias Schmid; Alex Hajnal; Jan E Kammenga; Basten L Snoek
Journal:  G3 (Bethesda)       Date:  2017-09-07       Impact factor: 3.154

9.  A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits.

Authors:  Basten L Snoek; Rita J M Volkers; Harm Nijveen; Carola Petersen; Philipp Dirksen; Mark G Sterken; Rania Nakad; Joost A G Riksen; Philip Rosenstiel; Jana J Stastna; Bart P Braeckman; Simon C Harvey; Hinrich Schulenburg; Jan E Kammenga
Journal:  BMC Biol       Date:  2019-03-12       Impact factor: 7.431

10.  Temperature modulates epidermal cell size in Drosophila melanogaster.

Authors:  R B.R. Azevedo; V French; L Partridge
Journal:  J Insect Physiol       Date:  2002-02       Impact factor: 2.354

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  1 in total

1.  Linkage mapping reveals loci that underlie differences in Caenorhabditis elegans growth.

Authors:  Joy Nyaanga; Erik C Andersen
Journal:  G3 (Bethesda)       Date:  2022-09-30       Impact factor: 3.542

  1 in total

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