Literature DB >> 21577579

5-Amino-1-phenyl-3-trifluoro-methyl-1H-pyrazole-4-carboxylic acid.

Francesco Caruso, Maria Valeria Raimondi, Giuseppe Daidone, Claudio Pettinari, Miriam Rossi.   

Abstract

In the title compound, C(11)H(8)F(3)N(3)O(2), there are two mol-ecules in the asymmetric unit wherein the phenyl rings make dihedral angles of 65.3 (2) and 85.6 (2)° with the pyrazole rings. In the crystal, pairs of mol-ecules are held together by O-H⋯O hydrogen bonds between the carboxyl groups, forming a centrosymmetric dimer with an R(2) (2)(8) motif. Intra-molecular N-H⋯O inter-actions are also present.

Entities:  

Year:  2009        PMID: 21577579      PMCID: PMC2970016          DOI: 10.1107/S1600536809032188

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Caruso & Rossi (2004 ▶); Maggio et al., (2008 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H8F3N3O2 M = 271.20 Monoclinic, a = 9.757 (3) Å b = 10.740 (3) Å c = 21.277 (6) Å β = 93.716 (3)° V = 2225 (1) Å3 Z = 8 Mo Kα radiation μ = 0.15 mm−1 T = 125 K 0.30 × 0.18 × 0.05 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.957, T max = 0.993 20692 measured reflections 3772 independent reflections 2737 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.140 S = 1.01 3772 reflections 368 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809032188/bx2218sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032188/bx2218Isup2.hkl Additional supplementary materials: crystallographic informan class="Chemical">tion; 3D view; checkCIF report
C11H8F3N3O2F(000) = 1104
Mr = 271.20Dx = 1.619 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3829 reflections
a = 9.757 (3) Åθ = 2.2–22.3°
b = 10.740 (3) ŵ = 0.15 mm1
c = 21.277 (6) ÅT = 125 K
β = 93.716 (3)°Flat needle, pale yellow
V = 2225 (1) Å30.30 × 0.18 × 0.05 mm
Z = 8
Bruker APEXII CCD diffractometer3772 independent reflections
Radiation source: fine-focus sealed tube2737 reflections with I > 2σ(I)
graphiteRint = 0.072
φ and ω scansθmax = 24.7°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −11→11
Tmin = 0.957, Tmax = 0.993k = −12→12
20692 measured reflectionsl = −25→24
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.140w = 1/[σ2(Fo2) + (0.0233P)2 + 1.9621P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
3772 reflectionsΔρmax = 0.43 e Å3
368 parametersΔρmin = −0.32 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0099 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F11.0029 (2)0.57631 (18)0.86748 (8)0.0449 (5)
F20.88145 (19)0.61681 (17)0.94547 (8)0.0402 (5)
F31.03719 (18)0.74508 (17)0.91981 (8)0.0410 (5)
F510.5059 (2)0.47366 (17)0.12944 (8)0.0417 (5)
F520.62681 (18)0.41822 (16)0.05332 (8)0.0380 (5)
F530.43613 (17)0.32665 (16)0.06739 (7)0.0361 (5)
O10.8071 (2)0.8727 (2)0.96933 (9)0.0323 (5)
O20.6443 (2)0.98989 (19)0.91963 (9)0.0295 (5)
O510.6194 (2)0.1440 (2)0.01774 (9)0.0312 (5)
O520.7542 (2)0.00154 (19)0.06715 (9)0.0343 (5)
N10.7329 (2)0.7741 (2)0.76427 (10)0.0268 (6)
N20.8258 (2)0.6935 (2)0.79385 (10)0.0283 (6)
N30.5911 (3)0.9467 (2)0.78704 (13)0.0301 (6)
N510.7186 (2)0.2162 (2)0.22548 (10)0.0263 (6)
N520.6454 (3)0.3151 (2)0.19957 (10)0.0274 (6)
N530.8148 (3)0.0243 (3)0.19747 (13)0.0334 (7)
C10.6874 (3)0.7528 (3)0.70017 (12)0.0280 (7)
C20.6161 (3)0.6448 (3)0.68442 (13)0.0307 (7)
H20.59710.58590.71600.037*
C30.5730 (3)0.6233 (3)0.62231 (13)0.0340 (8)
H30.52440.54910.61110.041*
C40.6001 (3)0.7086 (3)0.57672 (14)0.0385 (8)
H40.57020.69320.53400.046*
C50.6705 (4)0.8163 (3)0.59258 (14)0.0412 (8)
H50.68860.87510.56080.049*
C60.7154 (3)0.8395 (3)0.65493 (13)0.0350 (8)
H60.76430.91350.66610.042*
C70.8382 (3)0.7328 (3)0.85250 (13)0.0269 (7)
C80.7540 (3)0.8365 (3)0.86272 (12)0.0258 (7)
C90.6881 (3)0.8604 (3)0.80423 (12)0.0253 (6)
C100.7303 (3)0.9061 (3)0.91922 (13)0.0265 (7)
C110.9388 (3)0.6684 (3)0.89644 (14)0.0333 (7)
C510.7711 (3)0.2189 (3)0.28986 (12)0.0258 (7)
C520.6897 (3)0.1791 (3)0.33664 (13)0.0303 (7)
H520.59970.14850.32640.036*
C530.7412 (3)0.1847 (3)0.39859 (14)0.0341 (7)
H530.68650.15720.43130.041*
C540.8717 (3)0.2301 (3)0.41322 (13)0.0344 (8)
H540.90600.23520.45600.041*
C550.9524 (3)0.2681 (3)0.36596 (14)0.0343 (7)
H551.04290.29760.37610.041*
C560.9021 (3)0.2632 (3)0.30386 (14)0.0319 (7)
H560.95700.29010.27120.038*
C570.6225 (3)0.2847 (3)0.13997 (12)0.0253 (6)
C580.6793 (3)0.1676 (3)0.12543 (12)0.0256 (7)
C590.7408 (3)0.1272 (3)0.18279 (12)0.0262 (7)
C600.6867 (3)0.0985 (3)0.06813 (13)0.0277 (7)
C610.5484 (3)0.3755 (3)0.09757 (13)0.0286 (7)
H10.792 (4)0.918 (4)1.004 (2)0.076 (14)*
H300.597 (4)0.987 (4)0.748 (2)0.066 (12)*
H310.579 (4)1.000 (3)0.8190 (17)0.047 (10)*
H510.628 (4)0.087 (4)−0.0156 (19)0.067 (12)*
H5300.830 (3)0.001 (3)0.2381 (17)0.041 (9)*
H5310.807 (4)−0.029 (3)0.1682 (18)0.047 (11)*
U11U22U33U12U13U23
F10.0527 (12)0.0511 (12)0.0302 (10)0.0212 (10)−0.0019 (8)−0.0080 (8)
F20.0541 (12)0.0421 (11)0.0240 (9)0.0044 (9)0.0002 (8)0.0061 (8)
F30.0383 (11)0.0534 (12)0.0302 (10)−0.0014 (9)−0.0061 (8)−0.0047 (8)
F510.0600 (12)0.0355 (11)0.0290 (10)0.0142 (9)−0.0017 (9)−0.0026 (8)
F520.0473 (11)0.0392 (11)0.0280 (9)−0.0021 (9)0.0055 (8)0.0098 (8)
F530.0368 (10)0.0450 (11)0.0255 (9)0.0005 (8)−0.0054 (8)0.0025 (8)
O10.0468 (13)0.0355 (13)0.0141 (10)0.0050 (10)−0.0018 (9)−0.0034 (9)
O20.0381 (12)0.0312 (12)0.0191 (10)0.0040 (10)0.0009 (8)−0.0016 (8)
O510.0446 (13)0.0341 (12)0.0145 (10)0.0059 (10)−0.0013 (9)−0.0016 (9)
O520.0547 (14)0.0304 (12)0.0171 (10)0.0095 (11)−0.0016 (9)−0.0027 (8)
N10.0323 (14)0.0339 (14)0.0140 (11)0.0015 (11)−0.0012 (10)−0.0020 (10)
N20.0310 (14)0.0353 (15)0.0184 (12)0.0013 (11)−0.0004 (10)−0.0021 (10)
N30.0386 (15)0.0329 (15)0.0187 (13)0.0037 (12)0.0008 (11)−0.0015 (12)
N510.0364 (14)0.0264 (13)0.0158 (12)0.0009 (11)−0.0012 (10)−0.0018 (10)
N520.0363 (14)0.0285 (14)0.0169 (12)0.0022 (11)−0.0016 (10)−0.0004 (10)
N530.0501 (17)0.0324 (16)0.0170 (14)0.0067 (13)−0.0026 (12)−0.0009 (12)
C10.0320 (16)0.0357 (18)0.0162 (14)0.0050 (14)0.0012 (12)−0.0017 (12)
C20.0316 (16)0.0389 (19)0.0212 (15)0.0045 (14)−0.0010 (12)−0.0017 (13)
C30.0328 (17)0.042 (2)0.0268 (16)0.0037 (15)−0.0016 (13)−0.0096 (14)
C40.0422 (19)0.051 (2)0.0219 (16)0.0123 (16)−0.0039 (14)−0.0082 (15)
C50.052 (2)0.050 (2)0.0224 (16)0.0114 (17)0.0047 (14)0.0059 (15)
C60.0403 (18)0.0407 (19)0.0243 (16)0.0009 (15)0.0036 (13)−0.0014 (14)
C70.0329 (16)0.0304 (17)0.0172 (14)−0.0030 (13)0.0007 (12)0.0010 (12)
C80.0346 (16)0.0274 (16)0.0153 (14)−0.0040 (13)0.0015 (12)−0.0009 (12)
C90.0300 (16)0.0262 (16)0.0200 (14)−0.0032 (13)0.0029 (12)−0.0019 (12)
C100.0352 (17)0.0258 (16)0.0183 (14)−0.0067 (14)0.0000 (12)0.0012 (12)
C110.0389 (18)0.0370 (18)0.0236 (16)0.0012 (15)−0.0002 (13)−0.0021 (14)
C510.0333 (16)0.0267 (16)0.0169 (14)0.0001 (13)−0.0028 (12)−0.0021 (12)
C520.0317 (16)0.0367 (18)0.0227 (15)0.0003 (14)0.0030 (12)0.0007 (13)
C530.0415 (19)0.0408 (19)0.0205 (15)0.0057 (15)0.0055 (13)0.0016 (13)
C540.0443 (19)0.0393 (19)0.0185 (15)0.0069 (15)−0.0074 (13)−0.0042 (13)
C550.0364 (18)0.0350 (19)0.0307 (17)−0.0008 (14)−0.0047 (14)−0.0044 (14)
C560.0370 (18)0.0348 (18)0.0242 (16)−0.0050 (14)0.0049 (13)−0.0027 (13)
C570.0336 (16)0.0254 (16)0.0168 (14)−0.0027 (13)0.0006 (12)−0.0002 (12)
C580.0360 (17)0.0243 (16)0.0164 (14)−0.0035 (13)0.0021 (12)−0.0008 (11)
C590.0318 (16)0.0280 (17)0.0191 (14)−0.0014 (13)0.0036 (12)−0.0015 (12)
C600.0362 (17)0.0297 (18)0.0170 (15)−0.0045 (14)0.0001 (12)−0.0013 (12)
C610.0359 (17)0.0289 (17)0.0209 (15)0.0004 (13)0.0015 (13)−0.0048 (12)
F1—C111.341 (3)C2—C31.380 (4)
F2—C111.336 (3)C2—H20.9500
F3—C111.336 (4)C3—C41.372 (5)
F51—C611.335 (3)C3—H30.9500
F52—C611.333 (3)C4—C51.376 (5)
F53—C611.340 (3)C4—H40.9500
O1—C101.313 (3)C5—C61.392 (4)
O1—H10.91 (4)C5—H50.9500
O2—C101.231 (3)C6—H60.9500
O51—C601.315 (3)C7—C81.410 (4)
O51—H510.94 (4)C7—C111.482 (4)
O52—C601.232 (4)C8—C91.387 (4)
N1—C91.350 (4)C8—C101.447 (4)
N1—N21.376 (3)C51—C561.379 (4)
N1—C11.425 (3)C51—C521.380 (4)
N2—C71.316 (4)C52—C531.381 (4)
N3—C91.358 (4)C52—H520.9500
N3—H300.95 (4)C53—C541.381 (5)
N3—H310.90 (4)C53—H530.9500
N51—C591.346 (4)C54—C551.378 (4)
N51—N521.376 (3)C54—H540.9500
N51—C511.431 (3)C55—C561.380 (4)
N52—C571.315 (3)C55—H550.9500
N53—C591.346 (4)C56—H560.9500
N53—H5300.90 (3)C57—C581.416 (4)
N53—H5310.85 (4)C57—C611.484 (4)
C1—C61.379 (4)C58—C591.393 (4)
C1—C21.383 (4)C58—C601.433 (4)
C10—O1—H1114 (3)O2—C10—C8121.9 (3)
C60—O51—H51108 (2)O1—C10—C8114.9 (3)
C9—N1—N2112.0 (2)F2—C11—F3107.0 (2)
C9—N1—C1128.2 (2)F2—C11—F1106.6 (2)
N2—N1—C1119.5 (2)F3—C11—F1106.3 (2)
C7—N2—N1104.4 (2)F2—C11—C7113.1 (3)
C9—N3—H30118 (2)F3—C11—C7112.2 (3)
C9—N3—H31110 (2)F1—C11—C7111.3 (2)
H30—N3—H31114 (3)C56—C51—C52121.3 (3)
C59—N51—N52112.3 (2)C56—C51—N51118.9 (3)
C59—N51—C51126.7 (2)C52—C51—N51119.8 (3)
N52—N51—C51120.8 (2)C51—C52—C53119.0 (3)
C57—N52—N51104.2 (2)C51—C52—H52120.5
C59—N53—H530120 (2)C53—C52—H52120.5
C59—N53—H531111 (2)C54—C53—C52120.2 (3)
H530—N53—H531121 (3)C54—C53—H53119.9
C6—C1—C2121.1 (3)C52—C53—H53119.9
C6—C1—N1119.8 (3)C55—C54—C53120.2 (3)
C2—C1—N1119.1 (3)C55—C54—H54119.9
C3—C2—C1119.3 (3)C53—C54—H54119.9
C3—C2—H2120.3C54—C55—C56120.2 (3)
C1—C2—H2120.3C54—C55—H55119.9
C4—C3—C2120.3 (3)C56—C55—H55119.9
C4—C3—H3119.9C51—C56—C55119.2 (3)
C2—C3—H3119.9C51—C56—H56120.4
C3—C4—C5120.3 (3)C55—C56—H56120.4
C3—C4—H4119.9N52—C57—C58112.8 (2)
C5—C4—H4119.9N52—C57—C61117.9 (2)
C4—C5—C6120.3 (3)C58—C57—C61129.2 (2)
C4—C5—H5119.8C59—C58—C57103.7 (2)
C6—C5—H5119.8C59—C58—C60122.8 (3)
C1—C6—C5118.7 (3)C57—C58—C60133.5 (3)
C1—C6—H6120.6N51—C59—N53122.3 (3)
C5—C6—H6120.6N51—C59—C58107.0 (2)
N2—C7—C8112.4 (2)N53—C59—C58130.7 (3)
N2—C7—C11117.7 (3)O52—C60—O51122.6 (3)
C8—C7—C11129.8 (3)O52—C60—C58120.5 (3)
C9—C8—C7104.4 (2)O51—C60—C58116.8 (3)
C9—C8—C10124.1 (3)F52—C61—F51107.4 (2)
C7—C8—C10131.5 (3)F52—C61—F53106.6 (2)
N1—C9—N3123.2 (3)F51—C61—F53106.3 (2)
N1—C9—C8106.7 (2)F52—C61—C57112.1 (2)
N3—C9—C8130.0 (3)F51—C61—C57111.5 (2)
O2—C10—O1123.2 (3)F53—C61—C57112.7 (2)
C9—N1—N2—C7−0.7 (3)N2—C7—C11—F1−0.1 (4)
C1—N1—N2—C7−175.4 (2)C8—C7—C11—F1−177.2 (3)
C59—N51—N52—C570.2 (3)C59—N51—C51—C5683.1 (4)
C51—N51—N52—C57175.8 (2)N52—N51—C51—C56−91.7 (3)
C9—N1—C1—C669.0 (4)C59—N51—C51—C52−97.9 (4)
N2—N1—C1—C6−117.2 (3)N52—N51—C51—C5287.3 (3)
C9—N1—C1—C2−111.3 (3)C56—C51—C52—C530.3 (5)
N2—N1—C1—C262.5 (4)N51—C51—C52—C53−178.7 (3)
C6—C1—C2—C30.3 (4)C51—C52—C53—C540.4 (5)
N1—C1—C2—C3−179.4 (3)C52—C53—C54—C55−1.2 (5)
C1—C2—C3—C4−0.3 (4)C53—C54—C55—C561.3 (5)
C2—C3—C4—C50.0 (5)C52—C51—C56—C55−0.1 (5)
C3—C4—C5—C60.3 (5)N51—C51—C56—C55178.9 (3)
C2—C1—C6—C50.0 (5)C54—C55—C56—C51−0.6 (5)
N1—C1—C6—C5179.6 (3)N51—N52—C57—C58−0.2 (3)
C4—C5—C6—C1−0.3 (5)N51—N52—C57—C61−177.9 (2)
N1—N2—C7—C80.9 (3)N52—C57—C58—C590.1 (3)
N1—N2—C7—C11−176.6 (2)C61—C57—C58—C59177.5 (3)
N2—C7—C8—C9−0.8 (3)N52—C57—C58—C60−176.8 (3)
C11—C7—C8—C9176.3 (3)C61—C57—C58—C600.6 (5)
N2—C7—C8—C10177.1 (3)N52—N51—C59—N53177.5 (3)
C11—C7—C8—C10−5.7 (5)C51—N51—C59—N532.2 (5)
N2—N1—C9—N3−176.8 (3)N52—N51—C59—C58−0.2 (3)
C1—N1—C9—N3−2.6 (5)C51—N51—C59—C58−175.4 (3)
N2—N1—C9—C80.2 (3)C57—C58—C59—N510.1 (3)
C1—N1—C9—C8174.3 (3)C60—C58—C59—N51177.4 (3)
C7—C8—C9—N10.4 (3)C57—C58—C59—N53−177.3 (3)
C10—C8—C9—N1−177.8 (3)C60—C58—C59—N530.0 (5)
C7—C8—C9—N3177.0 (3)C59—C58—C60—O52−3.2 (5)
C10—C8—C9—N3−1.1 (5)C57—C58—C60—O52173.2 (3)
C9—C8—C10—O22.9 (5)C59—C58—C60—O51177.1 (3)
C7—C8—C10—O2−174.7 (3)C57—C58—C60—O51−6.4 (5)
C9—C8—C10—O1−177.2 (3)N52—C57—C61—F52115.3 (3)
C7—C8—C10—O15.2 (5)C58—C57—C61—F52−62.0 (4)
N2—C7—C11—F2−120.1 (3)N52—C57—C61—F51−5.1 (4)
C8—C7—C11—F262.9 (4)C58—C57—C61—F51177.6 (3)
N2—C7—C11—F3118.8 (3)N52—C57—C61—F53−124.5 (3)
C8—C7—C11—F3−58.2 (4)C58—C57—C61—F5358.2 (4)
D—H···AD—HH···AD···AD—H···A
N53—H531···O520.85 (4)2.20 (4)2.808 (3)128 (3)
O51—H51···O2i0.94 (4)1.75 (4)2.687 (3)177 (4)
N3—H31···O20.90 (4)2.20 (4)2.873 (3)132 (3)
O1—H1···O52ii0.91 (4)1.67 (4)2.580 (3)176 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N53—H531⋯O520.85 (4)2.20 (4)2.808 (3)128 (3)
O51—H51⋯O2i0.94 (4)1.75 (4)2.687 (3)177 (4)
N3—H31⋯O20.90 (4)2.20 (4)2.873 (3)132 (3)
O1—H1⋯O52ii0.91 (4)1.67 (4)2.580 (3)176 (4)

Symmetry codes: (i) ; (ii) .

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