Literature DB >> 35368849

Evaluating Confidence in Toxicity Assessments Based on Experimental Data and In Silico Predictions.

Candice Johnson1, Lennart T Anger2, Romualdo Benigni3, David Bower1, Frank Bringezu4, Kevin M Crofton5, Mark T D Cronin6, Kevin P Cross1, Magdalena Dettwiler7, Markus Frericks8, Fjodor Melnikov2, Scott Miller1, David W Roberts6, Diana Suarez-Rodriguez9, Alessandra Roncaglioni10, Elena Lo Piparo11, Raymond R Tice12, Craig Zwickl13, Glenn J Myatt1.   

Abstract

Understanding the reliability and relevance of a toxicological assessment is important for gauging the overall confidence and communicating the degree of uncertainty related to it. The process involved in assessing reliability and relevance is well defined for experimental data. Similar criteria need to be established for in silico predictions, as they become increasingly more important to fill data gaps and need to be reasonably integrated as additional lines of evidence. Thus, in silico assessments could be communicated with greater confidence and in a more harmonized manner. The current work expands on previous definitions of reliability, relevance, and confidence and establishes a conceptional framework to apply those to in silico data. The approach is used in two case studies: 1) phthalic anhydride, where experimental data are readily available and 2) 4-hydroxy-3-propoxybenzaldehyde, a data poor case which relies predominantly on in silico methods, showing that reliability, relevance, and confidence of in silico assessments can be effectively communicated within Integrated approaches to testing and assessment (IATA).

Entities:  

Year:  2021        PMID: 35368849      PMCID: PMC8967148          DOI: 10.1016/j.comtox.2021.100204

Source DB:  PubMed          Journal:  Comput Toxicol        ISSN: 2468-1113


  36 in total

1.  Computer-aided knowledge generation for understanding skin sensitization mechanisms: the TOPS-MODE approach.

Authors:  Ernesto Estrada; Grace Patlewicz; Mark Chamberlain; David Basketter; Sue Larbey
Journal:  Chem Res Toxicol       Date:  2003-10       Impact factor: 3.739

2.  Multivariate QSAR analysis of a skin sensitization database.

Authors:  M T Cronin; D A Basketter
Journal:  SAR QSAR Environ Res       Date:  1994       Impact factor: 3.000

3.  A dataset on 145 chemicals tested in alternative assays for skin sensitization undergoing prevalidation.

Authors:  Andreas Natsch; Cindy A Ryan; Leslie Foertsch; Roger Emter; Joanna Jaworska; Frank Gerberick; Petra Kern
Journal:  J Appl Toxicol       Date:  2013-04-09       Impact factor: 3.446

Review 4.  Categorization of chemicals according to their relative human skin sensitizing potency.

Authors:  David A Basketter; Nathalie Alépée; Takao Ashikaga; João Barroso; Nicola Gilmour; Carsten Goebel; Jalila Hibatallah; Sebastian Hoffmann; Petra Kern; Silvia Martinozzi-Teissier; Gavin Maxwell; Kerstin Reisinger; Hitoshi Sakaguchi; Andreas Schepky; Magalie Tailhardat; Marie Templier
Journal:  Dermatitis       Date:  2014 Jan-Feb       Impact factor: 4.845

5.  Contact allergy to fragrances: current patch test results (2005-2008) from the Information Network of Departments of Dermatology.

Authors:  Wolfgang Uter; Johannes Geier; Peter Frosch; Axel Schnuch
Journal:  Contact Dermatitis       Date:  2010-08-20       Impact factor: 6.600

6.  Skin sensitization in silico protocol.

Authors:  Candice Johnson; Ernst Ahlberg; Lennart T Anger; Lisa Beilke; Romualdo Benigni; Joel Bercu; Sol Bobst; David Bower; Alessandro Brigo; Sarah Campbell; Mark T D Cronin; Ian Crooks; Kevin P Cross; Tatyana Doktorova; Thomas Exner; David Faulkner; Ian M Fearon; Markus Fehr; Shayne C Gad; Véronique Gervais; Amanda Giddings; Susanne Glowienke; Barry Hardy; Catrin Hasselgren; Jedd Hillegass; Robert Jolly; Eckart Krupp; Liat Lomnitski; Jason Magby; Jordi Mestres; Lawrence Milchak; Scott Miller; Wolfgang Muster; Louise Neilson; Rahul Parakhia; Alexis Parenty; Patricia Parris; Alexandre Paulino; Ana Theresa Paulino; David W Roberts; Harald Schlecker; Reinhard Stidl; Diana Suarez-Rodrigez; David T Szabo; Raymond R Tice; Daniel Urbisch; Anna Vuorinen; Brian Wall; Thibaud Weiler; Angela T White; Jessica Whritenour; Joerg Wichard; David Woolley; Craig Zwickl; Glenn J Myatt
Journal:  Regul Toxicol Pharmacol       Date:  2020-07-01       Impact factor: 3.271

7.  Quantification of chemical peptide reactivity for screening contact allergens: a classification tree model approach.

Authors:  G Frank Gerberick; Jeffrey D Vassallo; Leslie M Foertsch; Brad B Price; Joel G Chaney; Jean-Pierre Lepoittevin
Journal:  Toxicol Sci       Date:  2007-03-30       Impact factor: 4.849

8.  In silico toxicology protocols.

Authors:  Glenn J Myatt; Ernst Ahlberg; Yumi Akahori; David Allen; Alexander Amberg; Lennart T Anger; Aynur Aptula; Scott Auerbach; Lisa Beilke; Phillip Bellion; Romualdo Benigni; Joel Bercu; Ewan D Booth; Dave Bower; Alessandro Brigo; Natalie Burden; Zoryana Cammerer; Mark T D Cronin; Kevin P Cross; Laura Custer; Magdalena Dettwiler; Krista Dobo; Kevin A Ford; Marie C Fortin; Samantha E Gad-McDonald; Nichola Gellatly; Véronique Gervais; Kyle P Glover; Susanne Glowienke; Jacky Van Gompel; Steve Gutsell; Barry Hardy; James S Harvey; Jedd Hillegass; Masamitsu Honma; Jui-Hua Hsieh; Chia-Wen Hsu; Kathy Hughes; Candice Johnson; Robert Jolly; David Jones; Ray Kemper; Michelle O Kenyon; Marlene T Kim; Naomi L Kruhlak; Sunil A Kulkarni; Klaus Kümmerer; Penny Leavitt; Bernhard Majer; Scott Masten; Scott Miller; Janet Moser; Moiz Mumtaz; Wolfgang Muster; Louise Neilson; Tudor I Oprea; Grace Patlewicz; Alexandre Paulino; Elena Lo Piparo; Mark Powley; Donald P Quigley; M Vijayaraj Reddy; Andrea-Nicole Richarz; Patricia Ruiz; Benoit Schilter; Rositsa Serafimova; Wendy Simpson; Lidiya Stavitskaya; Reinhard Stidl; Diana Suarez-Rodriguez; David T Szabo; Andrew Teasdale; Alejandra Trejo-Martin; Jean-Pierre Valentin; Anna Vuorinen; Brian A Wall; Pete Watts; Angela T White; Joerg Wichard; Kristine L Witt; Adam Woolley; David Woolley; Craig Zwickl; Catrin Hasselgren
Journal:  Regul Toxicol Pharmacol       Date:  2018-04-17       Impact factor: 3.271

9.  Improvement of human cell line activation test (h-CLAT) using short-time exposure methods for prevention of false-negative results.

Authors:  Kazuto Narita; Yuuki Ishii; Phuc Thi Hong Vo; Fumiko Nakagawa; Shinichi Ogata; Kunihiko Yamashita; Hajime Kojima; Hiroshi Itagaki
Journal:  J Toxicol Sci       Date:  2018       Impact factor: 2.196

10.  Chemical reactivity and skin sensitization potential for benzaldehydes: can Schiff base formation explain everything?

Authors:  Andreas Natsch; Hans Gfeller; Tina Haupt; Gerhard Brunner
Journal:  Chem Res Toxicol       Date:  2012-09-20       Impact factor: 3.739

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  1 in total

1.  Current status and future directions for a neurotoxicity hazard assessment framework that integrates in silico approaches.

Authors:  Kevin M Crofton; Arianna Bassan; Mamta Behl; Yaroslav G Chushak; Ellen Fritsche; Jeffery M Gearhart; Mary Sue Marty; Moiz Mumtaz; Manuela Pavan; Patricia Ruiz; Magdalini Sachana; Rajamani Selvam; Timothy J Shafer; Lidiya Stavitskaya; David T Szabo; Steven T Szabo; Raymond R Tice; Dan Wilson; David Woolley; Glenn J Myatt
Journal:  Comput Toxicol       Date:  2022-03-17
  1 in total

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