| Literature DB >> 35360861 |
Shinya Kasai1, Daisuke Nishizawa1, Junko Hasegawa1, Ken-Ichi Fukuda2, Tatsuya Ichinohe3, Makoto Nagashima4, Masakazu Hayashida5, Kazutaka Ikeda1.
Abstract
Short tandem repeats (STRs) and variable number of tandem repeats (VNTRs) that have been identified at approximately 0.7 and 0.5 million loci in the human genome, respectively, are highly multi-allelic variations rather than single-nucleotide polymorphisms. The number of repeats of more than a few thousand STRs was associated with the expression of nearby genes, indicating that STRs are influential genetic variations in human traits. Analgesics act on the central nervous system via their intrinsic receptors to produce analgesic effects. In the present study, we focused on STRs and VNTRs in the CNR1, GRIN2A, PENK, and PDYN genes and analyzed two peripheral pain sensation-related traits and seven analgesia-related traits in postoperative pain management. A total of 192 volunteers who underwent the peripheral pain sensation tests and 139 and 252 patients who underwent open abdominal and orthognathic cosmetic surgeries, respectively, were included in the study. None of the four STRs or VNTRs were associated with peripheral pain sensation. Short tandem repeats in the CNR1, GRIN2A, and PENK genes were associated with the frequency of fentanyl use, fentanyl dose, and visual analog scale pain scores 3 h after orthognathic cosmetic surgery (Spearman's rank correlation coefficient ρ = 0.199, p = 0.002, ρ = 0.174, p = 0.006, and ρ = 0.135, p = 0.033, respectively), analgesic dose, including epidural analgesics after open abdominal surgery (ρ = -0.200, p = 0.018), and visual analog scale pain scores 24 h after orthognathic cosmetic surgery (ρ = 0.143, p = 0.023), respectively. The associations between STRs in the CNR1 gene and the frequency of fentanyl use and fentanyl dose after orthognathic cosmetic surgery were confirmed by Holm's multiple-testing correction. These findings indicate that STRs in the CNR1 gene influence analgesia in the orofacial region.Entities:
Keywords: analgesic requirement; cannabinoid receptor 1; ionotropic glutamate receptor NMDA type subunit 2A; preproenkephalin; prodynorphin; short tandem repeat
Year: 2022 PMID: 35360861 PMCID: PMC8963810 DOI: 10.3389/fgene.2022.815089
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.772
Patients’ demographic and clinical data.
| Demographic data | Clinical data |
|---|---|
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| |
| Number of patients (male/female) | 192 (121/71) |
| Age (years) | 36.14 ± 12.69 (20–65) |
| Peripheral pain sensation-related traits: | |
| Latency to cold pain perception (s) | 23.75 (17.13–36.88); 6.00–180.00 |
| Latency of mechanical pain perception (kg) | 2.30 (1.79–3.02); 0.77–5.31 |
|
| |
| Number of patients (male/female) | 139 (81/58) |
| Age (years) | 63.63 ± 9.96 (28–80) |
| Body weight (kg) | 56.52 ± 10.44 (35–80) |
| BMI (kg/m2) | 22.47 ± 3.50 (14.50–35.03) |
| Analgesic requirements of opioid-related traits: | |
| Frequency of analgesic use during the 24 h postoperative period | 0 (0–1); 0–6 |
| 24 h postoperative analgesic dose converted to systemic pentazocine (mg) | 0.00 (0.00–15.00); 0.00–135.00 |
| 24 h postoperative analgesic dose (including epidural analgesics) converted to systemic pentazocine (mg) | 127.50 (96.00–177.00); 36.00–315.00 |
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| |
| Number of patients (male/female) | 252 (89/163) |
| Age (years) | 25.58 ± 7.44 (15–50) |
| Body weight (kg) | 58.22 ± 11.23 (38–128) |
| BMI (kg/m2) | 21.36 ± 3.02 (14.88–37.10) |
| Analgesic requirements of opioid-related traits: | |
| Frequency of fentanyl use during the 24 h postoperative period | 6 (3–12); 0–111 |
| 24 h postoperative fentanyl dose (μg/kg) | 2.32 (1.14–4.08); 0.00–13.82 |
| VAS pain score at 3 h (mm) | 25 (13–48); 0–90 |
| VAS pain score at 24 h (mm) | 24 (10–40); 0–83 |
The data are expressed as numbers, mean ± standard deviation (range), or median (interquartile range); range.
Short tandem repeats analyzed in the present study.
| Gene | Coding protein | dbSNP rs# | Position | Location in gene | STR/VNTR |
|---|---|---|---|---|---|
|
| cannabinoid receptor 1 | rs72426053, rs1562491880, rs1244069759, rs1164873271 | 6q15 | 3′ flanking region | (AAT)n |
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| Ionotropic glutamate receptor NMDA type subunit 2A | rs3219790 | 16p13.2 | 5′ flanking region | (GT)n |
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| proenkephalin | rs3138832 | 8q12.1 | 3′ flanking region | (CA)n |
|
| prodynorphin | rs1568548100, rs869080647, rs1568548112, rs1568548137, rs1568548201 | 20p13 | 5′ flanking region | (68 bp)n |
Associations between S and L alleles of STRs and peripheral pain sensation.
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|---|---|---|---|---|---|---|---|---|---|
| S allele | L allele | S allele | L allele | S allele | L allele | S allele | L allele | ||
| Number of repeats:Number of alleles (allelic frequency in S and L alleles) | 9: 43 (0.224) | 9: 1 (0.005) | 20: 25 (0.130) | 20: 1 (0.005) | 12: 31 (0.161) | 12: 1 (0.005) | 1: 13 (0.068) | ||
| 12: 22 (0.115) | 12: 1 (0.005) | 21: 9 (0.047) | 21: 2 (0.010) | 13: 91 (0.474) | 13: 32 (0.167) | 2: 171 (0.891) | 2: 141 (0.734) | ||
| 13: 9 (0.047) | 22: 20 (0.104) | 22: 5 (0.026) | 14: 68 (0.354) | 14: 155 (0.807) | 3: 8 (0.042) | 3: 48 (0.250) | |||
| 14: 48 (0.250) | 14: 15 (0.078) | 23: 27 (0.141) | 23: 3 (0.016) | 15: 2 (0.01) | 4: 3 (0.016) | ||||
| 15: 54 (0.281) | 15: 80 (0.417) | 24: 28 (0.146) | 24: 12 (0.063) | ||||||
| 16: 13 (0.068) | 16: 75 (0.391) | 25: 65 (0.339) | 25: 66 (0.344) | ||||||
| 17: 1 (0.005) | 17: 18 (0.094) | 26: 9 (0.047) | 26: 29 (0.151) | ||||||
| 27: 6 (0.031) | 27: 42 (0.219) | ||||||||
| 28: 1 (0.005) | 28: 17 (0.089) | ||||||||
| 29: 2 (0.010) | 29: 7 (0.036) | ||||||||
| 31: 5 (0.026) | |||||||||
| 32: 1 (0.005) | |||||||||
| 34: 1 (0.005) | |||||||||
| 35: 1 (0.005) | |||||||||
| Latency to cold pain perception | ρ | −0.047 | 0.027 | 0.003 | −0.035 | 0.019 | −0.041 | 0.079 | −0.019 |
|
| 0.520 | 0.713 | 0.963 | 0.632 | 0.796 | 0.571 | 0.277 | 0.790 | |
| Latency to mechanical pain perception | ρ | −0.077 | 0.125 | −0.036 | 0.015 | −0.021 | −0.048 | 0.011 | -0.115 |
|
| 0.293 | 0.086 | 0.622 | 0.837 | 0.774 | 0.511 | 0.878 | 0.112 | |
Spearman’s rank correlation tests were conducted to examine associations between shorter (S) and longer (L) alleles in each STR or VNTR and the latency to pain perception. ρ: Spearman’s rank correlation coefficient.
Associations between S and L alleles of STRs and postoperative analgesia in patients who underwent open abdominal surgery.
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| S allele | L allele | S allele | L allele | S allele | L allele | S allele | L allele | ||
| Number of repeats:Number of alleles (allelic frequency in S and L alleles) | 9: 19 (0.137) | 9: 3 (0.022) | 20: 15 (0.108) | 20: 3 (0.022) | 11: 1 (0.007) | 1: 17 (0.122) | |||
| 10: 1 (0.007) | 21: 11 (0.079) | 21: 3 (0.022) | 12: 22 (0.158) | 12: 2 (0.014) | 2: 119 (0.856) | 2: 98 (0.705) | |||
| 11: 1 (0.007) | 22: 15 (0.108) | 22: 2 (0.014) | 13: 59 (0.424) | 13: 21 (0.151) | 3: 3 (0.022) | 3: 36 (0.259) | |||
| 12: 14 (0.101) | 12: 1 (0.007) | 23: 15 (0.108) | 23: 4 (0.029) | 14: 57 (0.410) | 14: 110 (0.791) | 4: 5 (0.036) | |||
| 13: 8 (0.058) | 13: 1 (0.007) | 24: 27 (0.194) | 24: 12 (0.086) | 15: 6 (0.043) | |||||
| 14: 28 (0.201) | 14: 10 (0.072) | 25: 39 (0.281) | 25: 34 (0.245) | ||||||
| 15: 49 (0.353) | 15: 45 (0.324) | 26: 11 (0.079) | 26: 24 (0.173) | ||||||
| 16: 13 (0.094) | 16: 60 (0.432) | 27: 6 (0.043) | 27: 24 (0.173) | ||||||
| 17: 12 (0.086) | 28: 16 (0.115) | ||||||||
| 18: 1 (0.007) | 29: 6 (0.043) | ||||||||
| 30: 3 (0.022) | |||||||||
| 31: 4 (0.029) | |||||||||
| 32: 2 (0.014) | |||||||||
| 33: 1 (0.007) | |||||||||
| 34: 1 (0.007) | |||||||||
| Frequency of analgesic use | ρ | −0.153 | −0.140 | -0.093 | 0.015 | 0.107 | −0.010 | −0.066 | 0.029 |
|
| 0.078 | 0.109 | 0.275 | 0.859 | 0.211 | 0.903 | 0.437 | 0.735 | |
| Analgesic dose | ρ | −0.134 | −0.121 | −0.104 | −0.005 | 0.099 | −0.005 | −0.009 | 0.046 |
|
| 0.123 | 0.165 | 0.221 | 0.953 | 0.246 | 0.954 | 0.915 | 0.592 | |
| Analgesic dose including epidural analgesics | ρ | 0.068 | −0.050 | −0.200 | 0.009 | 0.050 | 0.028 | −0.048 | 0.011 |
|
| 0.440 | 0.566 | 0.018 | 0.914 | 0.557 | 0.745 | 0.575 | 0.900 | |
Spearman’s rank correlation tests were conducted to examine associations between shorter (S) and longer (L) alleles in each STR or VNTR and the frequency of analgesic use during the 24 h postoperative period (frequency of analgesic use), 24 h postoperative analgesic dose converted to systemic pentazocine (analgesic dose), and 24 h postoperative analgesic dose, including epidural analgesics (analgesic dose, including epidural analgesics). ρ: Spearman’s rank correlation coefficient.
Associations between S and L alleles of STRs and postoperative analgesia in patients who underwent orthognathic cosmetic surgery.
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| S allele | L allele | S allele | L allele | S allele | L allele | S allele | L allele | ||
| Number of repeats:Number of alleles (allelic frequency in S and L alleles) | 9: 41 (0.163) | 9: 2 (0.008) | 18: 1 (0.004) | 12: 34 (0.135) | 1: 9 (0.083) | ||||
| 12: 30 (0.119) | 12: 3 (0.012) | 19: 1 (0.004) | 13: 127 (0.504) | 13: 39 (0.155) | 2: 94 (0.870) | 2: 68 (0.630) | |||
| 13: 8 (0.032) | 20: 28 (0.111) | 20: 1 (0.004) | 14: 90 (0.357) | 14: 209 (0.829) | 3: 4 (0.037) | 3: 35 (0.324) | |||
| 14: 55 (0.218) | 14: 27 (0.107) | 21: 17 (0.067) | 21: 1 (0.004) | 15: 3 (0.012) | 4: 5 (0.046) | ||||
| 15: 96 (0.381) | 15: 76 (0.302) | 22: 28 (0.111) | 22: 5 (0.020) | ||||||
| 16: 20 (0.079) | 16: 125 (0.496) | 23: 42 (0.167) | 23: 3 (0.012) | ||||||
| 17: 1 (0.004) | 17: 17 (0.067) | 24: 43 (0.171) | 24: 19 (0.075) | ||||||
| 18: 1 (0.004) | 25: 61 (0.242) | 25: 91 (0.361) | |||||||
| 26: 18 (0.071) | 26: 46 (0.183) | ||||||||
| 27: 11 (0.044) | 27: 43 (0.171) | ||||||||
| 28: 1 (0.004) | 28: 20 (0.079) | ||||||||
| 29: 7 (0.028) | |||||||||
| 30: 3 (0.012) | |||||||||
| 31: 2 (0.008) | |||||||||
| 32: 7 (0.028) | |||||||||
| 33: 2 (0.008) | |||||||||
| 35: 1 (0.004) | |||||||||
| Frequency of fentanyl use | ρ | 0.199 * | −0.006 | −0.070 | −0.020 | 0.021 | 0.081 | −0.152 | −0.079 |
|
| 0.002 | 0.922 | 0.268 | 0.750 | 0.746 | 0.200 | 0.117 | 0.415 | |
| Fentanyl dose | ρ | 0.174 * | −0.016 | −0.103 | −0.044 | 0.053 | 0.070 | −0.132 | −0.118 |
|
| 0.006 | 0.802 | 0.106 | 0.486 | 0.408 | 0.269 | 0.173 | 0.226 | |
| VAS pain score at 3 h | ρ | 0.135 | 0.036 | 0.003 | 0.078 | −0.067 | 0.085 | −0.025 | −0.060 |
|
| 0.033 | 0.569 | 0.957 | 0.219 | 0.293 | 0.181 | 0.796 | 0.540 | |
| VAS pain score at 24 h | ρ | 0.059 | −0.061 | 0.000 | −0.076 | 0.015 | 0.143 | −0.031 | −0.103 |
|
| 0.354 | 0.340 | 0.994 | 0.230 | 0.815 | 0.023 | 0.752 | 0.289 | |
Spearman’s rank correlation tests were conducted to examine associations between shorter (S) and longer (L) alleles in each STR or VNTR and the frequency of fentanyl use during the 24 h postoperative period (frequency of fentanyl use), 24 h postoperative fentanyl dose (fentanyl dose), VAS pain score at 3 h, and VAS pain score at 24 h. ρ: Spearman’s rank correlation coefficient. *p < 0.05, significant difference between repeat number of STR and postoperative analgesia after Holm’s multiple-testing correction.