Ramonita Díaz-Ayala1, Marjorie López-Nieves1, Etienne S Colón Berlingeri1, Carlos R Cabrera1,2, Lisandro Cunci1,3, Carlos I González1,4, Pedro F Escobar5. 1. BIDEA LLC, Molecular Science Research Center, Lab 2-43, 1390 Ave. Ponce de León, San Juan 002926-2614, Puerto Rico. 2. Department of Chemistry and Biochemistry, University of Texas at El Paso, 500 W. University Ave., El Paso, Texas 79968, United States. 3. School of Natural Sciences and Technology, Universidad Ana G. Méndez, Gurabo Campus, Gurabo, Puerto Rico 00778, United States. 4. Department of Biology, University of Puerto Rico, Río Piedras Campus, San Juan 00931-3346, Puerto Rico. 5. Department of Obstetrics and Gynecology, Division of Gynecologic Oncology, University of Puerto Rico, School of Medicine, Medical Sciences Campus, San Juan 00926, Puerto Rico.
Abstract
Telomerase overexpression has been associated directly with cancer, and the enzyme itself is recognized within the scientific community as a cancer biomarker. BIDEA's biosensing strip (BBS) is an innovative technology capable of detecting the presence of telomerase activity (TA) using electrochemical impedance spectroscopy (EIS). This BBS is an interdigital gold (GID) electrode array similar in size and handling to a portable glucose sensor. For the detection of the biomarker, BBS was modified by the immobilization of a telomere-like single strand DNA (ssDNA) on its surface. The sensor was exposed to telomerase-positive extract from commercially available cancer cells, and the EIS spectra were measured. Telomerase recognizes the sequence of this immobilized ssDNA probe on the BBS, and the reverse transcription process that occurs in cancer cells is replicated, resulting in the ssDNA probe elongation. This surface process caused by the presence of TA generates changes in the capacitive process on the electrode array microchip surface, which is followed by EIS as the sensing tool and correlated with the presence of cancer cells. The telomerases' total cell extraction protocol results demonstrate significant changes in the charge-transfer resistance (R ct) change rate after exposure to telomerase-positive extract with a detection limit of 2.94 × 104 cells/mL. Finally, a preliminary study with a small set of "blind" uterine biopsy samples suggests the feasibility of using the changes in the R ct magnitude change rate (Δ(ΔR ct/R cti)/Δt) to distinguish positive from negative endometrial adenocarcinoma samples by the presence or absence of TA.
Telomerase overexpression has been associated directly with cancer, and the enzyme itself is recognized within the scientific community as a cancer biomarker. BIDEA's biosensing strip (BBS) is an innovative technology capable of detecting the presence of telomerase activity (TA) using electrochemical impedance spectroscopy (EIS). This BBS is an interdigital gold (GID) electrode array similar in size and handling to a portable glucose sensor. For the detection of the biomarker, BBS was modified by the immobilization of a telomere-like single strand DNA (ssDNA) on its surface. The sensor was exposed to telomerase-positive extract from commercially available cancer cells, and the EIS spectra were measured. Telomerase recognizes the sequence of this immobilized ssDNA probe on the BBS, and the reverse transcription process that occurs in cancer cells is replicated, resulting in the ssDNA probe elongation. This surface process caused by the presence of TA generates changes in the capacitive process on the electrode array microchip surface, which is followed by EIS as the sensing tool and correlated with the presence of cancer cells. The telomerases' total cell extraction protocol results demonstrate significant changes in the charge-transfer resistance (R ct) change rate after exposure to telomerase-positive extract with a detection limit of 2.94 × 104 cells/mL. Finally, a preliminary study with a small set of "blind" uterine biopsy samples suggests the feasibility of using the changes in the R ct magnitude change rate (Δ(ΔR ct/R cti)/Δt) to distinguish positive from negative endometrial adenocarcinoma samples by the presence or absence of TA.
Uterine cancer (UC)
is the fourth[1] most
common invasive cancer of the female reproductive system. Starting
in the endometrium, the internal lining of the uterus begins to grow
out of control, and if not detected or treated early, it can spread
to other areas of the body, decreasing the survival chance and success
of treatment, as well as increasing costs.[2,3] While
women over 50 years old are the group that exhibits the major probabilities
to suffer UC (90% of incidence), four percentage of women diagnosed
with this type of cancer are younger than 40 and remain fertile.[4] The incidence and mortality of endometrial cancer
(EC) has been increasing through the years. Although most EC does
not run-in families, about 5% is inherited. For example, a woman who
suffers Lynch syndrome has a much higher chance (15–60%) of
developing colorectal and endometrial (uterine) cancer.[5,6] Taking into consideration all these facts, it is clear how important
and imminent it is to have routine tests for EC. There is an urgent
need to screen for EC at its early stages before the clinical signs
and symptoms arrive and the cancer spreads; a test that helps doctors
differentiate between cancer and normal tissue is key.[7] Currently, there is no standard or routine screening test
for EC other than pathology tests that may take at least 1 or 2 weeks
to receive the full report. The screening method evaluated in this
study presents an opportunity to offer early treatment and decrease
morbidity and mortality rates.Telomerase is a ribonucleoprotein
complex that contains both an
RNA fragment that catalyzes the addition of TTAGGG repeats on the
telomeric end of the chromosomal DNA and a reverse transcriptase component,[8,9] identified by its enzymatic activity in 1985 by Elizabeth Blackburn
and Carol Greider.[10]Soon after its
discovery, Gregg Morin in 1989 identified telomerase
activity (TA) in human cells, while in 1994, Counter et al.[11] linked its reactivation with cancer cell proliferation.[10] Therefore, telomerase has been shown to be overexpressed
in most different types of malignant tumors, making it a useful biomarker
for cancer diagnosis.[12−14] Telomerase is an enzyme whose activities are essential
for cellular immortality, and it is observed in almost 90% of malignant
cells,[14,15] including EC cells.[16−19] Telomerase has been reported
as an epithelial cancer cell biomarker,[20] which can be used in early cancer detection, prognosis, and/or subsequent
monitoring of residual cancer. Because telomerase is absent in most
normal somatic cells, telomerase activity (TA) detection is an excellent
cancer biomarker. Despite these important facts, the number of publications
initially was limited because of difficulties involved in detecting
TA. It was not until the development of the telomeric repeat amplification
protocol (TRAP),[21,22] a polymerase chain reaction (PCR)-based
assay increased the ability to detect TA; a more significant number
of telomerase-related manuscripts began. However, this method is time-consuming,
expensive, requires specialized instruments, among some other drawbacks.The scientific literature regarding telomerase detection methods
is currently a proliferative area and seems promising. Some claim
incredible detection limits[23−29] and proposed very novel processes.[29,30] However, some
of them involve complex procedures,[23] others
with a relative complexity of the output signal (i.e., SERS methods),[24,27] the use of sophisticated instruments that will represent a challenge
when translating from the laboratory bench to the physician’s
office as a tool for detection, diagnosis, and monitoring cancer.
Others do not report results with complex samples, such as biological
samples (tissues samples).[24,26,28−30] Despite all reported prospective developing methods,
TRAP continues to be the standard-of-gold method for telomerase detection.
However, its use is only for research and does not represent an alternative
screening or diagnostic. Our research group (BIDEA) offers a powerful
and innovative technology with a high potential of becoming a screening
test for the early detection of uterine/EC cells. This was demonstrated
via trials, and the feasibility of this technology of becoming a routine
test for women is promising. BIDEA’s technology can detect
the presence of TA using electrochemical impedance spectroscopy (EIS)
analysis. The use of EIS as a detection method in biosensors has been
an extremely active field of study for several reasons. EIS has high
sensitivity, with minimal hardware requirements as well as its possibilities
of scalability and miniaturization.[31,32] All these
characteristics give EIS the advantage of being a manufacturable and
portable medical device, such as those currently in the market, glucometers.In this article, BIDEA successfully demonstrates how our gold (Au)
interdigitated (GID) electrode array or BIDEA’s biosensor strip
(BBS), which was modified by the immobilization of telomere-like ssDNA
on its surface, showed changes in the charge-transfer resistance (Rct) process when it is exposed to extract from
cancer cells. The technology proposed takes advantage of the telomerase
and its ssRNA template by tethering a telomere-like ssDNA biomolecule
probe. Then, the telomerase bonds and elongates the probe, blocking
electronic and capacitive processes on the microelectrode surface.
This change is detected by measuring the impedance using EIS and correlated
to the activity of telomerase, which indicates the presence of cancer
cells. Although, a lot of work has been reported using telomerase
as a cancer biomarker and other biosensors employing EIS as the detection
method, a very reduced number of studies couple both.[33−35] The innovation of this work consists in developing a biosensing
test strip that allows for the detection of TA via EIS in a quick
form, and the impedance measurement, using EIS, makes it compatible
with many portable electronic devices.In this work, we successfully
demonstrated the feasibility of our
sensing technology to detect the existence of EC cells via the detection
of TA by measuring sensitive electrochemical events occurring at the
interface of our sensor strip surface using EIS. This is coupled with
the specificity provided by exclusive biomolecules only present in
cancer cells combining the use of EIS, which accurately measures specific
electrochemical interactions with a GID, a system of only two electrodes,
and without the need of sensitive enzymes anchored to the electrode’s
surface. DNA probes are easily synthesized and tethered to the GID
electrode to be more robust and less expensive than enzymes. The results
demonstrate that changes in Rct can be
used to distinguish positive from negative endometrial adenocarcinoma
samples by detecting the presence or absence of TA.
Experimental
Section
Cell Culture and Extraction Methods
Commercial human
uterine adenocarcinoma cancer cell line HEC-1-A (ATCC HTB-112) was
obtained from the American Type Culture Collection (ATCC, Manassas,
VA). HEC-1-A cells are cancer cells that use the telomerase enzyme
in their process of becoming immortal,[36] and telomerase is the target of our biosensor; thus, HEC-1-A represents
a positive control. To grow and subculture the HEC-1-A cell line,
we followed the manufacturer’s protocol[37] and detailed it in the Supporting Information.Telomerase extract preparation was accomplished through the
following steps:[38] (1) cells were collected
in the exponential phase of growth, and 1 × 106 cells/mL
were washed twice with ice-cold phosphate-buffered saline (PBS) 1×
(140 mM NaCl, 2.7 M KCl, 10 mM NaHPO4, and 1.8 mM KH2PO4). (2) Then, cells were resuspended in ice-cold
3-[3-(cholamidopropyl)dimethylammonio]-1-propanesulfonate (CHAPS)
lysis buffer [10 mM Tris–HCl, pH 7.5, 1 mM MgCl2, 1 mM ethylenediaminetetraacetic acid (EDTA), 0.1 mM phenylmethanesulfonyl
fluoride (PMSF), 0.5% CHAPS, 10% glycerol] with a final concentration
of 25 × 106 cells/mL. (3) The suspension was then
incubated for 30 min on ice and centrifuged for 20 min at 15,000 rpm,
4 °C. (4) Finally, the supernatant was carefully transferred
to a fresh tube and frozen at −80 °C until use.
Extract
Preparation from Uterine Biopsy Samples
For
the extract preparation from the real sample, 50–80 mg of frozen
tissue was used. First, it was washed in cold wash buffer [10 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic
acid (HEPES)-KOH at pH-7.5, 1.5 mM MgCl2, 10 mM KCl, 1
mM dithiothreitol (DTT)] to remove possible contaminants and blood
from the surface of the sample and then resuspended in 200 μL
of ice-cold 1X CHAPS lysis buffer in a sterile 1.5 mL microcentrifuge
tube. The sample was homogenized with a mechanical homogenizer until
uniform consistency. The homogenization cycle consisted of intervals
of 10 s homogenizing and 30 s resting in ice for approximately 5 min.
The sample was kept on ice during homogenization to prevent heat accumulation.
Then, it was incubated on ice for 30 min, and the sample was spinned
in a microcentrifuge at 15,000 rpm for 20 min at 4 °C. The supernatant
(telomerase extract) was transferred into a fresh tube in small-volume
aliquots, quick-frozen on dry ice, and stored at −80 °C.
The total protein concentration was determined using the Bradford
assay. All the experiments were done in compliance with the
Federalwide Assurance (FWA) for the Protection of Human Subjects:
(FWA #: FWA00029431). Written informed consent was obtained from the
patients for sample collection, and external IRB (Advarra IRB: IRB00000971)
was approved for the protocol (Pro00031039).
Biosensor Microchip
Construction and Characterization
Telomerase Substrate Immobilization
Commercially available
Au interdigital electrode strips were used as a biosensor platform.
These electrodes were modified with single-strand DNA (ssDNA) probes
for telomerase sensing. A characteristic voltammogram for a clean
gold electrode was obtained, as shown in Figure S1.Prior to the immobilization of the 1 μM telomerase
substrate (TS-30) (Sequence: 5′HO-(CH2)6-S-S-(CH2)6TTTTTTTTTTAATCCGTCGAGCAGAGTT-3′)
onto the gold-sensing strip surface, TS-30 was dissolved in immobilization
buffer (I-buffer: 10 mM Tris–HCl, 0.1 M NaCl, 10 μM TCEP
at pH 7.5) and incubated for 30 min at room temperature to reduce
the disulfide bonds.[39] After the activation
of the thiol group, 10 μL of TS-30 solution was placed on the
cleaned sensing strip for 1 h of immobilization at 4 °C. Afterward,
the sensing strips were washed carefully with nanopure water, 0.05%
sodium dodecyl sulfate (SDS) for 1 min, and then dried with N2 flux. Nanopure water was previously treated with diethylpyrocarbonate
(DEPC) and autoclaved to inactivate RNase and DNase enzymes.
Electrochemical Characterization
For electrochemical
experiments, a digital potentiostat/galvanostat PGSTAT 204/FRA 32
M (Metrohm Autolab B.V., Utrecht, UT, The Netherlands) controlled
with Nova only driver 2.1.3 software was employed. First, the sensing
strip was electrochemically cleaned by cycling between a potential
range from 0 to 1.5 V vs Ag/AgCl (3 M NaCl) in 0.5 M sulfuric acid
solution at 300, 200, and 100 mV/s scan rates until a reproducible
voltammogram was obtained. Then, the sensing strips modified with
TS-30 were characterized electrochemically by cyclic voltammetry (CV),
as well as EIS, using telomerase extract coming from HEC-1-A. Figure shows each step
of the BBS construction.
Figure 1
Schematic representation for the tethering of
the TS-30 probes
on the GID electrode and the elongation mechanism responsible for
the change in the impedance during incubation at 37 °C.
Schematic representation for the tethering of
the TS-30 probes
on the GID electrode and the elongation mechanism responsible for
the change in the impedance during incubation at 37 °C.CV was recorded following the redox behavior of
2 mM K3Fe(CN)6/K4Fe(CN)6 solution in the
PBS buffer from 0.3 to −0.3 V vs OCP (open-circuit potential)
at a scan rate of 50 mV/s. EIS experiments were conducted from 1.0
MHz to 0.1 Hz, taking 40 measurements in the logarithmic scale, with
an amplitude of 10 mV, single sine method at 0.000 V vs OCP. The solution
containing the biomarker under study comes from commercial samples.
These samples were placed in 2.0 mL microtubes in a thermomixer at
37 °C, and the impedance was measured by EIS every 5 min during
the first 60 min, followed by three additional measurements every
20 min.
Results and Discussion
BBS Construction and Characterization
The modification
of the GID electrode was electrochemically characterized by CV and
EIS at every step of the modification process to assure the quality
of sensor fabrication; see Figure S2. A
decrease in the redox current response was observed, as well as a
small shift toward higher oxidation and reduction potential after
the GID electrode was modified with TS-30 was observed (see Figure S2a). These electrochemical changes are
attributed to the insulating effect of the ssDNA on the Au surface.
Its immobilization interferes and limits the free electron transfer
between the redox couple in solution and the GID electrode surface.
Equally, the electrode exhibited a significant change in impedance,
confirming the deposition of the TS-30 on the surface, as seen in Figure S2b. Because impedance is a measure of
resistance occurring on the electrode surface, the Nyquist plots in Figure S2b showed that the impedance for the
GID electrode modified with TS-30 increased compared to the bare and
clean GID electrode. The electrochemical response changes observed
in the CV and the EIS plots confirmed the immobilization of TS-30
on the GID surface. Linear sweep voltammetry (LSV) shown in Figure S3 gives a better characterization and
understanding of the modified surface. Two peaks were observed in
the LSV, indicating the immobilization of more than one species of
the GID electrode surface.The presence of these two desorption
peaks is indispensable to understand the TS-30 structure. TS-30 is
an alkanethiol composed of a head thiol group (−SH) that binds
to the gold surface through a strong covalent-like bond (Au–S),
an alkyl spacer chain (CH2)6, and a tail group.
Commercial TS comes with its thiol group in an oxidized form, with
the sulfur atoms protected by an S–S bond, while the tail groups
of both sides of the S atoms contain different spacer chains. In one
of them, the 30-base oligonucleotide TS-30 is present, while the other
sulfur has an hexanol group. For this reason, a reduction step to
activate the thiol group of the TS-30 before the immobilization process
was used. The reduction mechanism generates two molecules available
for the immobilization at the GID surface: (1) the ssDNA-thiolate
(TS-30 or HS-(CH2)6TTTTTTTTTTAATCCGTCGAGCAGAG
TT) and (2) a hydroxyalkylthiolate, better known as mercaptohexanol
(MCH or HO–(CH2)6–SH), as shown
in Figure S4. Indeed, the immobilization
of thiol-TS-30 on the GID surface was conducted via the formation
of a self-assembled monolayer (SAM). Regarding this fact, we expect
our TS-30 SAM to be a mixed monolayer having TS-30 and MCH-thiolates
in accordance with the presence of two electrodesorption peaks in
the LSV. Furthermore, a TS-30 surface density of (4.9 × 10–10 mol/cm2) for TS-30 SAM (1 h) was determined
by integrating the area of the desorption peak obtained by LSV, while
for MCH at 1 h of immobilization, the surface density was 8.8 ×
10–10 mol/cm2.
Electrochemical Response
with Biological Samples
The
modified GID electrodes were incubated in the cell extract where the
telomerase was present. The elongation reaction of the ssDNA (TS-30),
generated by the presence of telomerase in cell extracts, was evaluated
by EIS, as shown in Figure S5. The Nyquist
plot in Figure S5a represents the real
impedance (Z′) versus the imaginary impedance
(−Z′) for a GID electrode modified
with TS-30 for 1 h and exposed to telomerase extract. The spectrum
of impedance allowed us to characterize the surface of the GID to
detect the activity of telomerase based on the magnitude of the impedance
of the electrode. To achieve this analysis and to be able to interpret
the complex value of the impedance spectrum (Nyquist plot), the plot
was fitted to an equivalent circuit. One of the most frequently cited
equivalent circuits that fitted EIS spectra is the Randles equivalent
circuit.[40] In this work, the exhibited
Nyquist plots are fitted by an adapted Randles equivalent circuit,
where the ideal capacitor is replaced by a constant-phase element
(CPE).[31,41]Figure S5b represents
the solution resistance (Rs), charge-transfer
resistance (Rct), and double-layer capacitance
(Cdl). Thus, extrapolating the semicircle
to the Zreal axis, we were able to determine
the Rct and how this changed with incubation
time (GID electrode in the telomerase extract) or cancer cell concentration.
It should be noted in Figure S5a that the
amplitude of impedance increases gradually with time as the repeated
units of TTAGGG are continually added to the 3′ end of the
TS-30. In general, the impedance measurement from curves of 5 up to
120 min becomes larger, which is attributed to the number of repeat
units being added. The elongation process of TS-30 was described by
a slightly deformed semicircle because of the surface layer, and consequently,
the ion layer at the surface is not completely homogeneous.
Calibration
Curve, Positive and Negative Controls
To
establish the feasibility of our proposal, EIS was evaluated with
three control samples such as (a) the telomerase extract from HEC-1-A
as the positive control, (b) preheated telomerase extract at 95 °C
to turn telomerase inactive (negative control) and (b) buffer medium
as blank. Using the same concentrations (1 × 106 cells/mL)
for all control samples and a modified GID electrode with TS-30 for
1 h, EIS studies were performed. The changes in Rct were related to the elongation process of TS-30 by
TA. The results in Figure show a small decrement in Rct variations for those samples identified as a negative control: preheated
telomerase extract from HEC-1-A, and remarkably different with the
blank, both cases in comparison with the positive control. The more
noticeable difference in impedance, positive control vs blank, is
attributed to the TS-30 extension process caused by the presence or
absence of TA. The cases with minor changes in Rct result from a low TA, that is, preheated telomerase extract.
The apparent prevalence of TA in the negative control could be attributed
to an inefficient inhibition process. Preheating the sample for 10
min at 95 °C would not be enough to denature all telomerase present
in the sample and inactivate it. It is crucial to distinguish the
results shown in Figure a, b and their respective standard deviation error bars. Figure a shows replicates
(n = 5) for each control, and the relative significant
error bars show how accurate the mean value represents the individual
data. This means a high dispersion between each data point and the
mean. It does not indicate that the data are invalid but points out
that factors like the BBS and sample preparation need improvement.
In experiments that involve biological events, measurements are notoriously
variable. However, Figure a shows that our technology’s sensitivity is good,
and differences for each control are significant.
Figure 2
(a) Variation in charge-transfer
resistance (ΔRct/Rcti) in the function of
incubation time for different controls (1 × 106 cells/mL)
(solid square) EC cell line (HEC-1-A), (red circle) preheated
HEC-1-A at 95 °C, (triangle) buffer, (b) relative change in resistance
to charge transfer to telomerase reaction time for different concentrations
(positive and negative controls). Error bars represent the standard
deviations of 4 to 5 parallel replicates.
(a) Variation in charge-transfer
resistance (ΔRct/Rcti) in the function of
incubation time for different controls (1 × 106 cells/mL)
(solid square) EC cell line (HEC-1-A), (red circle) preheated
HEC-1-A at 95 °C, (triangle) buffer, (b) relative change in resistance
to charge transfer to telomerase reaction time for different concentrations
(positive and negative controls). Error bars represent the standard
deviations of 4 to 5 parallel replicates.These results are comparable with those obtained with other research
laboratory techniques such as the TRAPeze RT telomerase kit, which
was used to validate our results. This PCR based on the telomerase-extended
product detection method allows for identifying and quantifying TA
by directly measuring real-time fluorescence emission in the reaction
vessel. Furthermore, the threshold cycle (Ct) was used as an indicator of the DNA elongation process because
of the repeat telomeric sequences added by TA. Ct is the cycle threshold, or the number of PCR cycles required
to obtain a fluorescence signal.[42] For
example, real-time PCR results for those samples with high TA will
exhibit a higher DNA copy number compared to those with smaller DNA
copy numbers (see Table ). It is notable how the TA in the positive control, HEC-1-A, showed
decay after it was heat-treated. This happens because telomerase is
a heat-sensitive enzyme, and it becomes inactivated when it is incubated
for 10 min at 95 °C. Heat destroys the essential RNA template
and the reverse transcriptase protein of telomerase. TRAP results
exhibited the behavior that we anticipate and explain with our EIS
method for samples coming from different batches: telomerase extraction
from different batches, despite using the same extraction protocol
and cells/mL concentration; results are not necessarily equal regarding
the total protein concentration and TA. Simultaneously, the differences
exhibited for the buffer (in which the telomerase extract was substituted
for the lysis buffer) and attributed to TA absence compared to the
positive control are more evident in both methods (experimental using
EIS and TRAP), as shown by Ct in Table .
Table 1
Sample Concentration and TRAP RT Telomerase
Detection Results
sample
cells/mL
protein concentration
(Bradford assay) (∞g/mL)
Ct (threshold cycle)
copy number
(telomerase activity)
Ct samples heated at
95 °C
copy number
(telomerase activity)
HEC-1-A (May 7)
5.0 × 106
1405.98
29.80
3.518 × 105
41.55
1.094 × 103
HEC-1-A (May 14)
25.0 × 106
1624.64
28.95
5.352 × 105
38.54
4.795 × 103
no telomerase control (buffer)
N/A
N/A
38.22
5.621 ×
103
The Ct values are for positive controls
with values between 29 and 30. All of them were heated, and they exhibited
a Ct displacement toward Ct values greater than or equal to that exhibited by the
buffer (no telomerase control), Ct = 39.
This displacement toward higher Ct values
occurred in the heated samples, where TA’s inactivation is
expected. The fluorescence emission produced is directly proportional
to the number of TRAP products (telomerase substrate), extended products
generated. A comparison with the blank of the generated copy number
in both control positive and negative allows discriminating between
the direct result of the PCR reaction and TA. These results not only
show the feasibility of our platform to detect telomerase but also
suggests that it is analogous with the TRAPeze assays, providing an
extraordinary sensitivity. The next objective is to establish parameters,
such as sensitivity and detection limits.Once demonstrated
the viability to distinguish between the positive
and negative samples and determine the GID biosensor’s sensitivity,
the relationship between cancer cell concentrations in cells/mL and
the Rct magnitude change rate (Δ(ΔRct/Rcti)/Δt) was investigated. A range of eight concentrations was
analyzed (see Figure a, b). Rct changes for different concentrations
and at specific times were evaluated. A positive response is observed
in a concentration range of 2.0 × 106 cell/mL to 2.5
× 104 cells/mL, and then, a negative response occurred
at 1 × 104 cells/mL. The response in this graph was
obtained during the first 40 min of the EIS measurements. This behavior
suggests that additional studies should be performed at concentrations
below this value (1 × 104 cells/mL), which have match
boundaries between cancerous and noncancerous samples. As shown in Figure a and observed in Figure a, b, the difference
in charge-transfer resistance between buffer and samples of different
cells/mL concentrations is significant. Nevertheless, a high standard
deviation (error bars) could be observed, especially in samples with
telomerase extract coming from a lower cell/mL concentration. As discussed
before, it suggests how minor differences in BBS modification, sample
preparation, or replicating the measurement could be significantly
affected by the measurement, especially when the TA is small. In contrast,
an evaluation of the sensitivity (the graph slope) of the BBS response, Rct magnitude change rate (Δ(ΔRct/Rcti)/Δt) vs cancer cell concentrations, exhibited small standard
deviation error bars. This suggested a significant difference in (Δ(ΔRct/Rcti)/Δt) that allows for discrimination between samples with different
TAs.
Figure 3
Charge-transfer resistance change (ΔRct/Rcti) of BBS for TA as a function
of incubation time. Sensitivity of BBS for TA detection. The measurements
were taken with different concentrations of telomerase extracted from
(a) 1.0 × 105, 2.5 × 105, 5 ×
105, 1.0 × 106, and 2.0 × 106 HEC-1-A cells/mL and (b) 1 × 104, 2.5 × 104, and 5.0 × 104 cells/mL. Extraction buffer
represents a 0 cells/mL concentration. Error bars represent the standard
deviations of five to six parallel replicates.
Charge-transfer resistance change (ΔRct/Rcti) of BBS for TA as a function
of incubation time. Sensitivity of BBS for TA detection. The measurements
were taken with different concentrations of telomerase extracted from
(a) 1.0 × 105, 2.5 × 105, 5 ×
105, 1.0 × 106, and 2.0 × 106 HEC-1-A cells/mL and (b) 1 × 104, 2.5 × 104, and 5.0 × 104 cells/mL. Extraction buffer
represents a 0 cells/mL concentration. Error bars represent the standard
deviations of five to six parallel replicates.The elongation process occurs by the addition of several telomeric
repeats (TTAGGG) at the 3′ end of TS-30; thus, at higher concentrations
of telomerase, the number of telomeric repeats increases in comparison
to low telomerase concentration. This fact is evident in the EIS biosensing
experimental results. Figure a shows a remarkable Rct change
rate at different concentrations, and a major sensitivity is observed
at higher concentrations up to 1 × 105 cells/mL. A
strong linear correlation was observed between the logarithmic concentration
and the Rct magnitude change rate. The
linear equation was attained from the linear relation (y = 0.0076x + −0.035), where (y) is Rct magnitude change rate (Δ(Rct/Rcti)/Δt), and (x) represents the logarithm of
different concentrations of HEC-1-A. (Figure b) Using the standard methods for determining
the limit of blank (LoB) and the limit of detection (LoD) published
by Clinical and Laboratory Standards Institutes (CLSI), the detection
limit was calculated.[43,44] From eq , the LoB, the highest value expecting to
be observed from a sample that contains no analyte (buffer), was determined
to be (−1.11 × 10–3 Ω/min). Then,
substituting the LoB value in eq , the signal corresponding to the “lowest” analyte
concentration likely to be reliably distinguished from the LoB and
at which detection is “feasible” was obtained.
Figure 4
(a) Comparison of the Rct magnitude
change rate (Δ(ΔRct/Rcti)/Δt) vs cancer cell
concentrations in cells/mL of the BBS for TA. The measurements were
taken at different whole-cell extract concentrations, 1.0 × 105, 2.5 × 105, 5 × 105, 1.0
× 106, and 2.0 × 106 HEC-1-A cells/mL.
(b) Linear relationship between (Δ(ΔRct/Rcti)/Δt) and the logarithm of cell extract concentrations.
(a) Comparison of the Rct magnitude
change rate (Δ(ΔRct/Rcti)/Δt) vs cancer cell
concentrations in cells/mL of the BBS for TA. The measurements were
taken at different whole-cell extract concentrations, 1.0 × 105, 2.5 × 105, 5 × 105, 1.0
× 106, and 2.0 × 106 HEC-1-A cells/mL.
(b) Linear relationship between (Δ(ΔRct/Rcti)/Δt) and the logarithm of cell extract concentrations.Using the LoD values and the linear equation for the relationship
between the Rct magnitude change rate
and the logarithmic of concentration HEC-1-A, the detection limit
was calculated to be 2.94 × 104 cells/mL. This value
is under the findings shown in Figure b. At concentrations below 5.0 × 104 cells/mL, we could observe a sensitivity decrease and a random behavior
with enormous error bars. However, these variabilities open the doors
to more studies to improve this LoD. While the preliminary results
obtained with uterine biopsy samples and discussed below placed this
biosensor in that frontier of being capable of spotting the earliest
detectable precancerous perturbations, more studies are needed in
this area before establishing a conclusion.
Pilot Study with Uterine
Biopsy Samples
Seven double-blinded
endometrial biopsies were evaluated with the BBS. The diagnosis of
samples, positive or negative, was unknown to BIDEA and to the gynecologist–oncologist
(Gyn-Onc). The Gyn-Onc provided a fraction of the endometrial biopsy,
the other fraction was sent for diagnostic pathology, and then, both
results were compared. BIDEA only processed samples from those patients
who received a biopsy prescription and consented for a fraction of
their samples to be used in this study. The samples were evaluated
by BIDEA’s innovative proposed biosensing methodology and corroborated
with the TRAP assay. Two convincing examples, in which the presence
of TA (Sample 002) and lack of TA (Sample 003) are suggested, are
shown in Figure a.
Both samples exemplify dramatically different behaviors in Rct changes with respect to time. However, when
we evaluate the slope of the variation in Rct during the incubation time for each sample during the first 40 min
and compare them with the standard samples, we can suggest a TA result
(either positive or negative). The value of the signal for the LoB
determined with the equation of the LOD (eq ) results in a Rct magnitude change rate (Δ(Rct/Rcti)/Δt) (slope of the
curve) of −1.1 × 10–3 Ω/min that
suggested that those samples with a negative slope in the graph of
(ΔRct/Rcti) vs time are negative, Figure b. Those with a slope near zero will be negative samples
or under our detection limits. In contrast, samples with a positive
slope in the graph of (ΔRct/Rcti) vs time are positive (Samples 001, 002,
005, and 007). These results, although validated by the TRAP assay,
are not in agreement with the diagnostic pathology (Table ). The diagnostic pathology
is a qualitative assay, while BIDEA results are quantitative TA measurements.
Figure 5
(a) EIS
for Rct change (ΔRct/Rcti) measurements
as a function of incubation time in the (◆) presence and (∗)
absence of telomerase activity. (b) Variation in charge-transfer resistance
(Rct) in function of incubation time for
different endometrial biopsy samples and the buffer.
Table 2
Results for Endometrial Biopsy Samples
Using Diagnostic Pathology versus BBSa
sample
pathologic
diagnosis
reported
by literature telomerase activity (TA)
reference
TRAP results
our results
((ΔRct/Rcti)/Δt)
S00l
endometrial
hyperplasia with atypia
exhibited TA
(46)
TA
activity
positive
m = 1.4
× 10–2
S002
no endometrial
tissue seen/abundant mucoid material
no expected
TA
TA activity
positive
m = 2.0
× 10–2
S003
negative for
malignancy. Acute and chronic inflammation with bacteria colonies
(a) EIS
for Rct change (ΔRct/Rcti) measurements
as a function of incubation time in the (◆) presence and (∗)
absence of telomerase activity. (b) Variation in charge-transfer resistance
(Rct) in function of incubation time for
different endometrial biopsy samples and the buffer.Ref (46).Although the diagnostic pathology results were negative
for all
the samples analyzed in this study, the diagnosed conditions may exhibit
TA because they are considered precancerous lesions, as previously
reported.[45] Although this study analyzed
a small number of cases with uncertainty that varies from 20 to 40%,
it represents a suitable proof-of-concept that requires additional
testing.Therefore, BBS can potentially become a routine screening
tool
and play a pivotal role in reducing the incidence and mortality rates
of EC. This biomedical sensing technology is particularly novel and
unique not only because it allows for rapid cancer cell detection
but also because the impedance measurement, using EIS, makes it potentially
compatible with many portable electronic devices. This interaction,
between a molecular biology event and an electrochemical microchip
response, qualifies as a selective and sensitive in vitro diagnostic
device (IVD) that no other biomedical device can deliver.
Conclusions
This work demonstrates that our BBS and EIS technique results in
a reliable way to detect TA. Our outcomes are in accordance with the
commonly used methods, such as the TRAP assay. The results validate
the total cell extraction protocol as an appropriate one.This
BBS showed to effectively detect the presence or absence of
TA in real-time in complex samples as obtained through whole-cell
lysis and with detection limits of 2.94 × 104 cells/mL.
EIS results show maximum impedimetric changes within the first 15
to 40 min. Also, the magnitude in Rct changes
will provide a good idea about the presence or absence of TA and could
be used to discriminate between different cancer stages. These findings
suggest that reliable results can be obtained quickly and that EIS
will be used as a quantitative method for screening TA.Future
work includes the validation and fine-tuning of this technology
with many known positive and negative endometrial biopsy samples.
This will enable us to obtain a deeper understanding of the sensing
process with real tissues, which will, in turn, allow us to establish
tendencies and to optimize EIS parameters with endometrial samples
from a biopsy.
Authors: N W Kim; M A Piatyszek; K R Prowse; C B Harley; M D West; P L Ho; G M Coviello; W E Wright; S L Weinrich; J W Shay Journal: Science Date: 1994-12-23 Impact factor: 47.728