Literature DB >> 35354837

Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks.

Fikret Emre Kapucu1, Andrey Vinogradov2, Tanja Hyvärinen2, Laura Ylä-Outinen2, Susanna Narkilahti3.   

Abstract

We present a dataset of microelectrode array (MEA) recordings from human pluripotent stem cell (hPSC)-derived and rat embryonic cortical neurons during their in vitro maturation. The data were prepared to assess extracellularly recorded spontaneous activity and to compare the functional development of these neuronal networks. In addition to recordings of spontaneous activity, we provide pharmacological responses of hPSC-derived and rat cortical cultures at their mature stage. Together with the recorded electrode raw data, we share the analysis code to form a comprehensive dataset including spike times, spike waveforms, burst activity and network synchronization metrics calculated with two different connectivity estimators. Moreover, we provide the analysis code that produced the key scientific findings published previously with this dataset. This large dataset enables investigation of the functional aspects of maturing cortical neuronal networks and provides substantial parameters to assess the differences and similarities between hPSC-derived and rat cortical networks in vitro. This publicly available dataset will be beneficial, especially for experimental and computational neuroscientists.
© 2022. The Author(s).

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Year:  2022        PMID: 35354837      PMCID: PMC8969177          DOI: 10.1038/s41597-022-01242-4

Source DB:  PubMed          Journal:  Sci Data        ISSN: 2052-4463            Impact factor:   6.444


  31 in total

1.  Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering.

Authors:  R Quian Quiroga; Z Nadasdy; Y Ben-Shaul
Journal:  Neural Comput       Date:  2004-08       Impact factor: 2.026

2.  A self-adapting approach for the detection of bursts and network bursts in neuronal cultures.

Authors:  Valentina Pasquale; Sergio Martinoia; Michela Chiappalone
Journal:  J Comput Neurosci       Date:  2009-08-08       Impact factor: 1.621

3.  Electrophysiological investigation of human embryonic stem cell derived neurospheres using a novel spike detection algorithm.

Authors:  Margot Mayer; Onetsine Arrizabalaga; Florian Lieb; Manuel Ciba; Sylvia Ritter; Christiane Thielemann
Journal:  Biosens Bioelectron       Date:  2017-09-19       Impact factor: 10.618

Review 4.  Opportunities and challenges of pluripotent stem cell neurodegenerative disease models.

Authors:  Jackson Sandoe; Kevin Eggan
Journal:  Nat Neurosci       Date:  2013-06-25       Impact factor: 24.884

5.  Derivation of human embryonic stem cells in defined conditions.

Authors:  Tenneille E Ludwig; Mark E Levenstein; Jeffrey M Jones; W Travis Berggren; Erika R Mitchen; Jennifer L Frane; Leann J Crandall; Christine A Daigh; Kevin R Conard; Marian S Piekarczyk; Rachel A Llanas; James A Thomson
Journal:  Nat Biotechnol       Date:  2006-01-01       Impact factor: 54.908

6.  Rapid single-step induction of functional neurons from human pluripotent stem cells.

Authors:  Yingsha Zhang; Changhui Pak; Yan Han; Henrik Ahlenius; Zhenjie Zhang; Soham Chanda; Samuele Marro; Christopher Patzke; Claudio Acuna; Jason Covy; Wei Xu; Nan Yang; Tamas Danko; Lu Chen; Marius Wernig; Thomas C Südhof
Journal:  Neuron       Date:  2013-06-05       Impact factor: 17.173

Review 7.  Revealing neuronal function through microelectrode array recordings.

Authors:  Marie Engelene J Obien; Kosmas Deligkaris; Torsten Bullmann; Douglas J Bakkum; Urs Frey
Journal:  Front Neurosci       Date:  2015-01-06       Impact factor: 4.677

8.  Evaluation of the performance of information theory-based methods and cross-correlation to estimate the functional connectivity in cortical networks.

Authors:  Matteo Garofalo; Thierry Nieus; Paolo Massobrio; Sergio Martinoia
Journal:  PLoS One       Date:  2009-08-04       Impact factor: 3.240

9.  Characterization of Early Cortical Neural Network Development in Multiwell Microelectrode Array Plates.

Authors:  Ellese Cotterill; Diana Hall; Kathleen Wallace; William R Mundy; Stephen J Eglen; Timothy J Shafer
Journal:  J Biomol Screen       Date:  2016-03-29

10.  Compromised Barrier Function in Human Induced Pluripotent Stem-Cell-Derived Retinal Pigment Epithelial Cells from Type 2 Diabetic Patients.

Authors:  Mostafa Kiamehr; Alexa Klettner; Elisabeth Richert; Ali Koskela; Arto Koistinen; Heli Skottman; Kai Kaarniranta; Katriina Aalto-Setälä; Kati Juuti-Uusitalo
Journal:  Int J Mol Sci       Date:  2019-08-01       Impact factor: 5.923

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