Literature DB >> 19669401

A self-adapting approach for the detection of bursts and network bursts in neuronal cultures.

Valentina Pasquale1, Sergio Martinoia2,3, Michela Chiappalone2.   

Abstract

Dissociated networks of neurons typically exhibit bursting behavior, whose features are strongly influenced by the age of the culture, by chemical/electrical stimulation or by environmental conditions. To help the experimenter in identifying the changes possibly induced by specific protocols, we developed a self-adapting method for detecting both bursts and network bursts from electrophysiological activity recorded by means of micro-electrode arrays. The algorithm is based on the computation of the logarithmic inter-spike interval histogram and automatically detects the best threshold to distinguish between inter- and intra-burst inter-spike intervals for each recording channel of the array. An analogous procedure is followed for the detection of network bursts, looking for sequences of closely spaced single-channel bursts. We tested our algorithm on recordings of spontaneous as well as chemically stimulated activity, comparing its performance to other methods available in the literature.

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Year:  2009        PMID: 19669401     DOI: 10.1007/s10827-009-0175-1

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  35 in total

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Journal:  Neurosci Lett       Date:  2004-05-06       Impact factor: 3.046

3.  Controlling bursting in cortical cultures with closed-loop multi-electrode stimulation.

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Journal:  J Neurosci       Date:  2005-01-19       Impact factor: 6.167

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5.  Precisely timed spatiotemporal patterns of neural activity in dissociated cortical cultures.

Authors:  J D Rolston; D A Wagenaar; S M Potter
Journal:  Neuroscience       Date:  2007-07-05       Impact factor: 3.590

6.  Identifying repeating motifs in the activation of synchronized bursts in cultured neuronal networks.

Authors:  Nadav Raichman; Eshel Ben-Jacob
Journal:  J Neurosci Methods       Date:  2008-01-11       Impact factor: 2.390

7.  Spontaneous periodic synchronized bursting during formation of mature patterns of connections in cortical cultures.

Authors:  H Kamioka; E Maeda; Y Jimbo; H P Robinson; A Kawana
Journal:  Neurosci Lett       Date:  1996-03-15       Impact factor: 3.046

8.  Spontaneous neuronal firing patterns in fetal rat cortical networks during development in vitro: a quantitative analysis.

Authors:  A M Habets; A M Van Dongen; F Van Huizen; M A Corner
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10.  An extremely rich repertoire of bursting patterns during the development of cortical cultures.

Authors:  Daniel A Wagenaar; Jerome Pine; Steve M Potter
Journal:  BMC Neurosci       Date:  2006-02-07       Impact factor: 3.288

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4.  Synchronization of action potentials during low-magnesium-induced bursting.

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Journal:  J Neurophysiol       Date:  2015-01-21       Impact factor: 2.714

5.  Comparative microelectrode array data of the functional development of hPSC-derived and rat neuronal networks.

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8.  Burst analysis tool for developing neuronal networks exhibiting highly varying action potential dynamics.

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Journal:  Front Comput Neurosci       Date:  2012-06-19       Impact factor: 2.380

9.  Development of micro-electrode array based tests for neurotoxicity: assessment of interlaboratory reproducibility with neuroactive chemicals.

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Journal:  Front Neuroeng       Date:  2011-04-27

10.  Modular neuronal assemblies embodied in a closed-loop environment: toward future integration of brains and machines.

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