Literature DB >> 3534789

The proofreading of hydroxy analogues of leucine and isoleucine by leucyl-tRNA synthetases from E. coli and yeast.

S Englisch, U Englisch, F von der Haar, F Cramer.   

Abstract

Three analogues each of leucine and isoleucine carrying hydroxy groups in gamma- or delta- or gamma- and delta-position have been synthesized, and tested in the aminoacylation by leucyl-tRNA synthetases from E. coli and yeast. Hydrolytic proofreading, as proposed in the chemical proofreading model, of these analogues and of homocysteine should result in a lactonisation of these compounds and therefore provide information regarding the proofreading mechanism of the two leucyl-tRNA synthetases. Leucyl-tRNA synthetase from E. coli shows a high initial substrate discrimination. Only two analogues, gamma-hydroxyleucine and homocysteine are activated and transferred to tRNALeu where a post-transfer proofreading occurs. Lactonisation of gamma-hydroxyleucine and homocysteine could be detected. Leucyl-tRNA synthetase from yeast has a relatively poor initial discrimination of these substrates, which is compensated by a very effective pre-transfer proofreading on the aminoacyl-adenylate level. No lactonisation nor mischarged tRNALeu is detectable.

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Year:  1986        PMID: 3534789      PMCID: PMC311778          DOI: 10.1093/nar/14.19.7529

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  29 in total

1.  Large scale purification of tRNA ser , tRNA tyr and tRNA phe from Baker's yeast.

Authors:  D Schneider; R Solfert; F von der Haar
Journal:  Hoppe Seylers Z Physiol Chem       Date:  1972-08

2.  Rapid deacylation by isoleucyl transfer ribonucleic acid synthetase of isoleucine-specific transfer ribonucleic acid aminoacylated with valine.

Authors:  E W Eldred; P R Schimmel
Journal:  J Biol Chem       Date:  1972-05-10       Impact factor: 5.157

3.  Amino acid dependent ATP-32PPi exchange measurement. A filter paper disk method.

Authors:  M M Simlot; P Pfaender
Journal:  FEBS Lett       Date:  1973-09-15       Impact factor: 4.124

4.  Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity.

Authors:  J J Hopfield
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

5.  The frequency of errors in protein biosynthesis.

Authors:  R B Loftfield; D Vanderjagt
Journal:  Biochem J       Date:  1972-08       Impact factor: 3.857

6.  Transfer ribonucleic acid-induced hydrolysis of valyladenylate bound to isoleucyl ribonucleic acid synthetase.

Authors:  A N Baldwin; P Berg
Journal:  J Biol Chem       Date:  1966-02-25       Impact factor: 5.157

7.  Editing mechanisms in protein synthesis. Rejection of valine by the isoleucyl-tRNA synthetase.

Authors:  A R Fersht
Journal:  Biochemistry       Date:  1977-03-08       Impact factor: 3.162

8.  Hydrolytic action of aminoacyl-tRNA synthetases from baker's yeast: "chemical proofreading" preventing acylation of tRNA(I1e) with misactivated valine.

Authors:  F von der Haar; F Cramer
Journal:  Biochemistry       Date:  1976-09-07       Impact factor: 3.162

9.  Isoleucyl-tRNA synthetase from bakers' yeast: multistep proofreading in discrimination between isoleucine and valine with modulated accuracy, a scheme for molecular recognition by energy dissipation.

Authors:  W Freist; I Pardowitz; F Cramer
Journal:  Biochemistry       Date:  1985-11-19       Impact factor: 3.162

10.  Enzyme hyperspecificity. Rejection of threonine by the valyl-tRNA synthetase by misacylation and hydrolytic editing.

Authors:  A R Fersht; M M Kaethner
Journal:  Biochemistry       Date:  1976-07-27       Impact factor: 3.162

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  32 in total

1.  Tertiary structure base pairs between D- and TpsiC-loops of Escherichia coli tRNA(Leu) play important roles in both aminoacylation and editing.

Authors:  Xing Du; En-Duo Wang
Journal:  Nucleic Acids Res       Date:  2003-06-01       Impact factor: 16.971

Review 2.  Editing of errors in selection of amino acids for protein synthesis.

Authors:  H Jakubowski; E Goldman
Journal:  Microbiol Rev       Date:  1992-09

3.  Partitioning of tRNA-dependent editing between pre- and post-transfer pathways in class I aminoacyl-tRNA synthetases.

Authors:  Morana Dulic; Nevena Cvetesic; John J Perona; Ita Gruic-Sovulj
Journal:  J Biol Chem       Date:  2010-05-24       Impact factor: 5.157

4.  Degenerate connective polypeptide 1 (CP1) domain from human mitochondrial leucyl-tRNA synthetase.

Authors:  Qing Ye; Meng Wang; Zhi-Peng Fang; Zhi-Rong Ruan; Quan-Quan Ji; Xiao-Long Zhou; En-Duo Wang
Journal:  J Biol Chem       Date:  2015-08-13       Impact factor: 5.157

5.  Mutational unmasking of a tRNA-dependent pathway for preventing genetic code ambiguity.

Authors:  Amy M Williams; Susan A Martinis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

6.  Isolated CP1 domain of Escherichia coli leucyl-tRNA synthetase is dependent on flanking hinge motifs for amino acid editing activity.

Authors:  Aswini K Betha; Amy M Williams; Susan A Martinis
Journal:  Biochemistry       Date:  2007-05-03       Impact factor: 3.162

Review 7.  The return of pretransfer editing in protein synthesis.

Authors:  Srujana S Yadavalli; Karin Musier-Forsyth; Michael Ibba
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-04       Impact factor: 11.205

8.  CP1-dependent partitioning of pretransfer and posttransfer editing in leucyl-tRNA synthetase.

Authors:  Michal T Boniecki; Michael T Vu; Aswini K Betha; Susan A Martinis
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-19       Impact factor: 11.205

9.  Amino-acid-dependent shift in tRNA synthetase editing mechanisms.

Authors:  Jaya Sarkar; Susan A Martinis
Journal:  J Am Chem Soc       Date:  2011-10-31       Impact factor: 15.419

10.  Proofreading in vivo: editing of homocysteine by methionyl-tRNA synthetase in Escherichia coli.

Authors:  H Jakubowski
Journal:  Proc Natl Acad Sci U S A       Date:  1990-06       Impact factor: 11.205

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