| Literature DB >> 35332674 |
Yifei Zhang1,2, Beibei Guo3, Sha Cao2,4, Chi Zhang4,5, Yong Zang2,4.
Abstract
An immunotherapy trial often uses the phase I/II design to identify the optimal biological dose, which monitors the efficacy and toxicity outcomes simultaneously in a single trial. The progression-free survival rate is often used as the efficacy outcome in phase I/II immunotherapy trials. As a result, patients developing disease progression in phase I/II immunotherapy trials are generally seriously ill and are often treated off the trial for ethical consideration. Consequently, the happening of disease progression will terminate the toxicity event but not vice versa, so the issue of the semi-competing risks arises. Moreover, this issue can become more intractable with the late-onset outcomes, which happens when a relatively long follow-up time is required to ascertain progression-free survival. This paper proposes a novel Bayesian adaptive phase I/II design accounting for semi-competing risks outcomes for immunotherapy trials, referred to as the dose-finding design accounting for semi-competing risks outcomes for immunotherapy trials (SCI) design. To tackle the issue of the semi-competing risks in the presence of late-onset outcomes, we re-construct the likelihood function based on each patient's actual follow-up time and develop a data augmentation method to efficiently draw posterior samples from a series of Beta-binomial distributions. We propose a concise curve-free dose-finding algorithm to adaptively identify the optimal biological dose using accumulated data without making any parametric dose-response assumptions. Numerical studies show that the proposed SCI design yields good operating characteristics in dose selection, patient allocation, and trial duration.Entities:
Keywords: adaptive design; immunotherapy; late-onset outcome; phase I/II clinical trial; semi-competing risks
Mesh:
Year: 2022 PMID: 35332674 PMCID: PMC9481656 DOI: 10.1002/pst.2209
Source DB: PubMed Journal: Pharm Stat ISSN: 1539-1604 Impact factor: 1.234
FIGURE 1Illustration of the late‐onset mechanism. The solid circle indicates that the event does not happen at the end of the follow‐up. The hollow circle indicates that the event is missing. The solid triangle indicates that the event has happened
Operating characteristics of the SCI, observed‐data, and complete‐data designs based on 5000 replicates
| Design | Dose level | DLT/DP (%) |
| Duration (month) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | None | |||||
| Scenario 1 | (0.95,0.25) | (0.9,0.4) | (0.85,0.5) | (0.45,0.7) | (0.4,0.75) | |||||
| Utility | 22.0 | 21.1 | 21.3 | 38.2 | 39.2 | |||||
| SCI | % Selected | 0.0 | 0.0 | 0.2 | 0.2 | 0.0 |
| |||
| # Patients | 6.9 | 7.0 | 6.0 | 4.8 | 2.5 | 46.9/77.7 | 27.2 | 9.1 | ||
| Observed data | % Selected | 0.1 | 0.1 | 0.1 | 0.3 | 0.0 |
| |||
| # Patients | 6.0 | 6.4 | 6.5 | 8.6 | 5.7 | 53.3/69.6 | 33.1 | 11.1 | ||
| Complete data | % Selected | 0.0 | 0.0 | 0.0 | 0.3 | 0.0 |
| |||
| # Patients | 3.5 | 3.9 | 3.8 | 5.2 | 2.3 | 51.3/71.4 | 18.7 | 12.5 | ||
| Scenario 2 | (0.35,0.03) | (0.32,0.25) | (0.3,0.28) | (0.28,0.35) | (0.28,0.4) | |||||
| Utility | 72.4 | 64.9 | 64.9 | 63.2 | 61.0 | |||||
| SCI | % Selected |
| 21.1 | 15.9 | 8.7 | 4.7 | 0.3 | |||
| # Patients |
| 12.5 | 10.3 | 7.6 | 5.8 | 19.4/31.9 | 59.9 | 21.0 | ||
| Observed data | % Selected |
| 23.9 | 19.8 | 15.6 | 9.0 | 0.3 | |||
| # Patients |
| 12.8 | 11.9 | 11.1 | 9.0 | 24.3/30.6 | 59.9 | 21.0 | ||
| Complete data | % Selected |
| 18.5 | 14.0 | 12.1 | 4.5 | 0.8 | |||
| # Patients |
| 11.8 | 9.7 | 9.4 | 5.8 | 20.3/31.8 | 59.7 | 39.8 | ||
| Scenario 3 | (0.45,0.05) | (0.25,0.08) | (0.23,0.27) | (0.2,0.4) | (0.2,0.5) | |||||
| Utility | 64.1 | 77.6 | 70.3 | 66.4 | 61.8 | |||||
| SCI | % Selected | 17.8 |
| 22.8 | 6.7 | 1.2 | 0.6 | |||
| # Patients | 11.4 |
| 12.7 | 7.7 | 4.2 | 18.8/27.7 | 59.7 | 20.9 | ||
| Observed data | % Selected | 18.5 |
| 30.3 | 10.4 | 1.3 | 0.4 | |||
| # Patients | 10.6 |
| 15.1 | 9.9 | 6.7 | 22.4/26.6 | 59.9 | 21.0 | ||
| Complete data | % Selected | 11.2 |
| 21.3 | 8.6 | 1.1 | 0.5 | |||
| # Patients | 8.9 |
| 12.8 | 8.0 | 4.4 | 19.0/26.6 | 59.8 | 39.8 | ||
| Scenario 4 | (0.7,0.1) | (0.45,0.2) | (0.3,0.22) | (0.4,0.28) | (0.45,0.4) | |||||
| Utility | 43.9 | 57.9 | 67.6 | 58.0 | 49.8 | |||||
| SCI | % Selected | 1.7 | 22.4 |
| 18.2 | 3.5 | 5.7 | |||
| # Patients | 6.6 | 13.2 |
| 11.1 | 5.6 | 23.1/41.5 | 57.8 | 20.2 | ||
| Observed data | % Selected | 0.2 | 21.7 |
| 24.7 | 7.0 | 2.7 | |||
| # Patients | 4.8 | 11.9 |
| 14.0 | 7.7 | 24.2/40.8 | 59.3 | 20.7 | ||
| Complete data | % Selected | 1.6 | 19.4 |
| 17.4 | 3.1 | 5.1 | |||
| # Patients | 5.0 | 11.8 |
| 11.0 | 5.4 | 23.4/39.8 | 57.9 | 38.6 | ||
| Scenario 5 | (0.6,0.05) | (0.48,0.1) | (0.45,0.12) | (0.2,0.15) | (0.35,0.25) | |||||
| Utility | 53.1 | 59.8 | 61.2 | 78.0 | 62.8 | |||||
| SCI | % Selected | 4.9 | 12.3 | 12.9 |
| 11.7 | 0.5 | |||
| # Patients | 7.1 | 9.4 | 9.3 |
| 8.8 | 14.0/35.2 | 59.9 | 20.9 | ||
| Observed data | % Selected | 4.2 | 13.5 | 17.0 |
| 21.6 | 0.5 | |||
| # Patients | 6.2 | 9.3 | 10.6 |
| 12.5 | 14.7/35.9 | 59.9 | 21.0 | ||
| Complete data | % Selected | 2.5 | 8.5 | 7.8 |
| 10.9 | 0.7 | |||
| # Patients | 5.2 | 7.7 | 7.6 |
| 8.8 | 14.6/32.2 | 59.7 | 39.8 | ||
| Scenario 6 | (0.45,0.1) | (0.4,0.15) | (0.35,0.2) | (0.3,0.23) | (0.1,0.25) | |||||
| Utility | 62.0 | 63.5 | 64.9 | 67.2 | 80.4 | |||||
| SCI | % Selected | 13.1 | 14.7 | 11.9 | 15.3 |
| 1.1 | |||
| # Patients | 10.6 | 9.9 | 9.0 | 10.2 |
| 19.7/28.6 | 59.4 | 20.8 | ||
| Observed‐data | % Selected | 13.3 | 16.5 | 18.0 | 19.0 |
| 0.3 | |||
| # Patients | 9.2 | 10.3 | 11.0 | 11.6 |
| 20.0/28.9 | 59.9 | 21.0 | ||
| Complete‐data | % Selected | 9.4 | 8.8 | 9.7 | 11.4 |
| 0.5 | |||
| # Patients | 8.2 | 8.1 | 7.9 | 8.5 |
| 20.7/25.0 | 59.7 | 39.8 | ||
Notes: The probability pairs in parentheses are the probabilities of DP occurring and DLT occurring for each dose level. The percentage of trials with no dose selected is denoted by “None.” DLT/DP (%) is the percentage of patients experiencing DLT and the percentage of patients experiencing DP. N is the total number of patients. The numbers in bold font indicate the OBD selection rates and patient allocation under the true OBD.
FIGURE 2Sensitivity analysis with different time‐to‐event generating functions
FIGURE 3Sensitivity analysis with different