| Literature DB >> 35328203 |
Immacolata Polvere1,2, Serena Voccola2, Silvia D'Andrea2, Lucrezia Zerillo1,2, Romualdo Varricchio2, Jessica Raffaella Madera1, Romania Stilo1, Pasquale Vito1,2, Tiziana Zotti1,2.
Abstract
Molecular tests are the gold standard to diagnose severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection but are associated with a diagnostic delay, while antigen detection tests can generate results within 20 min even outside a laboratory. In order to evaluate the accuracy and reliability of the FAST COVID-19 SARS-CoV-2 Antigen Rapid Test Kit (Ag-RDT), two respiratory swabs were collected simultaneously from 501 patients, with mild or no coronavirus disease 2019 (COVID-19)-related symptoms, and analyzed with both the Reverse Transcriptase-quantitative Polymerase Chain Reaction (RT-qPCR) and the FAST COVID-19 SARS-CoV-2 Antigen Rapid Test. Results were then compared to determine clinical performance in a screening setting. We measured a precision of 97.41% (95% CI 92.42-99.15%) and a recall of 98.26% (95% CI 93.88-99.25%), with a specificity of 99.22% (95% CI 97.74-99.74%), a negative predictive value of 99.48% (95% CI 97.98-99.87%), and an overall accuracy of 99.00% (95% CI 97.69-99.68%). Concordance was described by a Kappa coefficient of 0.971 (95% CI 0.947-0.996). Considering short lead times, low cost, and opportunities for decentralized testing, the Ag-RDT test can enhance the efforts to control SARS-CoV-2 spread in several settings.Entities:
Keywords: Ag-RDT; COVID-19; RT-qPCR; SARS-CoV-2; antigenic test; diagnosis; surveillance
Year: 2022 PMID: 35328203 PMCID: PMC8947527 DOI: 10.3390/diagnostics12030650
Source DB: PubMed Journal: Diagnostics (Basel) ISSN: 2075-4418
Figure 1Flow chart summarizing the study design. Over a period of four months, 1012 individuals were tested for SARS-CoV-2 infection. Eligible patients for the comparative study were 501 individuals declaring mild or no COVID-19 related symptoms and not previously diagnosed as COVID-19-cases.
Scheme for the diagnosis of SARS-CoV-2 positivitiy by RT-qPCR.
| N | RdRP/Hel | SARS-CoV-2 Infection |
|---|---|---|
| Ct > 40 or absent | Ct > 40 or absent | Not detected |
| Ct ≤ 40 | Ct > 40 or absent | Detected |
| Ct > 40 or absent | Ct ≤ 40 | Detected |
Demographic data and symptoms’ manifestations of volunteers participating to study.
| Gender | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Age | No. | % | Female | % | Male | % | Symptoms | No. | % |
| 0–20 | 34 | 6.79 | 12 | 2.40 | 22 | 4.39 | Mild symptoms | 16 | 3.19 |
| 21–40 | 194 | 38.72 | 71 | 14.17 | 124 | 24.75 | Asymptomatic | 485 | 96.81 |
| 41–60 | 174 | 34.73 | 81 | 16.17 | 92 | 18.36 | TOTAL | 501 | 100.00 |
| 61–80 | 80 | 15.97 | 33 | 6.59 | 47 | 9.38 | |||
| 81–100 | 12 | 2.40 | 5 | 1.00 | 7 | 1.40 | |||
| N/A | 7 | 1.40 | 2 | 0.40 | 5 | 1.00 | |||
| TOTAL | 501 | 100.00 | 204 | 40.72 | 297 | 59.28 | |||
Figure 2RT-qPCR amplification results of positive samples. Ct values for probe-based RT-qPCR amplification of N, RdRP/Hel and E genes in 115 SARS-CoV-2-positive samples.
Figure 3Comparison of RT-qPCR and antigenic test results. Graphical distribution of 501 SARS-CoV-2-positive and -negative samples detected through FAST COVID Ag-RDT respect to Ct values for the N gene resulting from RT-qPCR analysis. All colored dots are representative of SARS-CoV-2-positive samples diagnosed as described in the Materials and Methods section. Red dots represent samples with very late or no amplification of N (Ct > 40) but positive for RdRP/Hel gene amplification.
Contingency table showing the association of the RT-qPCR results with age, gender, symptoms and the results of the rapid test (two last lines) evaluated by Chi-square/Fisher’s exact test. The p-value from a Fisher’s test is exactly determined and quantifies the significance of the deviation from the hypothesis of non-association (null hypothesis). Statistically significant p < 0.05.
| Features | Overall | RT-qPCR Positive | RT-qPCR Negative | Ag-RDT Positive | Ag-RDT Negative | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. | % | No. | % | % within the Same Group | No. | % | % within the Same Group | No. | % | % within the Same Group | No. | % | % within the Same Group | ||||
|
| Male | 297 | 59.28 | 65 | 12.97 | 21.89 | 232 | 59.28 | 78.11 | 0.5174 | 64 | 12.77 | 21.55 | 233 | 46.51 | 78.45 | 0.3324 |
| Female | 204 | 40.72 | 50 | 9.98 | 24.51 | 154 | 30.74 | 75.49 | 52 | 10.38 | 25.49 | 152 | 30.34 | 74.51 | |||
|
| 0–20 | 34 | 6.79 | 8 | 1.60 | 23.53 | 26 | 5.19 | 76.47 | 0.8874 | 8 | 1.60 | 23.53 | 26 | 5.19 | 76.47 | 0.9588 |
| 21–40 | 194 | 38.72 | 41 | 8.18 | 21.13 | 153 | 30.54 | 78.87 | 42 | 8.38 | 21.65 | 152 | 30.34 | 78.35 | |||
| 41–60 | 174 | 34.73 | 43 | 8.78 | 24.71 | 131 | 26.15 | 75.29 | 44 | 8.78 | 25.29 | 130 | 25.95 | 74.71 | |||
| 61–80 | 80 | 15.97 | 18 | 3.59 | 22.50 | 62 | 12.38 | 77.50 | 18 | 3.59 | 22.50 | 62 | 12.38 | 77.50 | |||
| 81–100 | 12 | 2.40 | 4 | 0.60 | 33.33 | 8 | 1.60 | 66.67 | 3 | 0.60 | 25.00 | 9 | 1.80 | 75.00 | |||
| N/A | 7 | 1.40 | 1 | 0.20 | 14.29 | 6 | 1.20 | 85.71 | 1 | 0.20 | 14.29 | 6 | 1.20 | 85.71 | |||
|
| Mild symptoms | 16 | 3.19 | 4 | 0.80 | 25.00 | 12 | 2.39 | 75.00 | 0.7691 | 4 | 0.80 | 25.00 | 12 | 2.40 | 75.00 | 0.7709 |
| Asymptomatic | 485 | 96.81 | 111 | 22.16 | 22.89 | 374 | 74.65 | 77.11 | 112 | 22.36 | 23.09 | 373 | 74.45 | 76.91 | |||
|
| Positive | 116 | 23.15 | 113 | 22.55 | 97.41 | 3 | 0.60 | 2.59 | <0.001 * | |||||||
| Negative | 385 | 76.85 | 2 | 0.40 | 0.52 | 383 | 76.85 | 99.48 | |||||||||
* Evaluated by Fisher’s Exact test.
Figure 4Assessment of limit of detection for the Ag-RDT. Serial dilutions of recombinant SARS-CoV-2 Nucleocapsid (N) protein have been used to assess the lowest concentration detectable in the antigenic test. The time of appearance of the colored band in the window of the test line is also reported. Results on the cassettes have been read within 20 min.