Literature DB >> 33406644

Test Groups, Not Individuals: A Review of the Pooling Approaches for SARS-CoV-2 Diagnosis.

Renato Millioni1, Cinzia Mortarino2.   

Abstract

Massive molecular testing for SARS-CoV-2 diagnosis is maene">ndatory to maene">nage the spread of n class="Disease">COVID-19. Diagnostic screening should be performed at a mass scale, extended to the asymptomatic population, and repeated over time. An accurate diagnostic pipeline for SARS-CoV-2 that could massively increase the laboratory efficiency, while being sustainable in terms of time and costs, should be based on a pooling strategy. In the past few months, researchers from different disciplines had this same idea: test groups, not individuals. This critical review intends to highlight both the general consents-even if the results from different publications have been obtained with different protocols-and the points of disagreement that are creating some interpretative/comprehension difficulties. Different pooling schemes and technical aspects associated to the type of pooling adopted are described and discussed. We hope that this review can consolidate information to support researchers in designing optimized COVID-19 testing protocols based on pooling.

Entities:  

Keywords:  SARS-CoV-2; molecular testing; pooling

Year:  2021        PMID: 33406644      PMCID: PMC7823333          DOI: 10.3390/diagnostics11010068

Source DB:  PubMed          Journal:  Diagnostics (Basel)        ISSN: 2075-4418


  19 in total

1.  Sample Pooling as a Strategy to Detect Community Transmission of SARS-CoV-2.

Authors:  Catherine A Hogan; Malaya K Sahoo; Benjamin A Pinsky
Journal:  JAMA       Date:  2020-05-19       Impact factor: 56.272

2.  A pooled testing strategy for identifying SARS-CoV-2 at low prevalence.

Authors:  Leon Mutesa; Pacifique Ndishimye; Yvan Butera; Jacob Souopgui; Annette Uwineza; Robert Rutayisire; Ella Larissa Ndoricimpaye; Emile Musoni; Nadine Rujeni; Thierry Nyatanyi; Edouard Ntagwabira; Muhammed Semakula; Clarisse Musanabaganwa; Daniel Nyamwasa; Maurice Ndashimye; Eva Ujeneza; Ivan Emile Mwikarago; Claude Mambo Muvunyi; Jean Baptiste Mazarati; Sabin Nsanzimana; Neil Turok; Wilfred Ndifon
Journal:  Nature       Date:  2020-10-21       Impact factor: 49.962

3.  Virological assessment of hospitalized patients with COVID-2019.

Authors:  Roman Wölfel; Victor M Corman; Wolfgang Guggemos; Michael Seilmaier; Sabine Zange; Marcel A Müller; Daniela Niemeyer; Terry C Jones; Patrick Vollmar; Camilla Rothe; Michael Hoelscher; Tobias Bleicker; Sebastian Brünink; Julia Schneider; Rosina Ehmann; Katrin Zwirglmaier; Christian Drosten; Clemens Wendtner
Journal:  Nature       Date:  2020-04-01       Impact factor: 49.962

4.  Assessment of Specimen Pooling to Conserve SARS CoV-2 Testing Resources.

Authors:  Baha Abdalhamid; Christopher R Bilder; Emily L McCutchen; Steven H Hinrichs; Scott A Koepsell; Peter C Iwen
Journal:  Am J Clin Pathol       Date:  2020-05-05       Impact factor: 2.493

5.  Informed sequential pooling approach to detect SARS-CoV-2 infection.

Authors:  Renato Millioni; Cinzia Mortarino
Journal:  PLoS One       Date:  2020-12-30       Impact factor: 3.240

6.  Analytical sensitivity and efficiency comparisons of SARS-CoV-2 RT-qPCR primer-probe sets.

Authors:  Chantal B F Vogels; Anderson F Brito; Anne L Wyllie; Joseph R Fauver; Isabel M Ott; Chaney C Kalinich; Mary E Petrone; Arnau Casanovas-Massana; M Catherine Muenker; Adam J Moore; Jonathan Klein; Peiwen Lu; Alice Lu-Culligan; Xiaodong Jiang; Daniel J Kim; Eriko Kudo; Tianyang Mao; Miyu Moriyama; Ji Eun Oh; Annsea Park; Julio Silva; Eric Song; Takehiro Takahashi; Manabu Taura; Maria Tokuyama; Arvind Venkataraman; Orr-El Weizman; Patrick Wong; Yexin Yang; Nagarjuna R Cheemarla; Elizabeth B White; Sarah Lapidus; Rebecca Earnest; Bertie Geng; Pavithra Vijayakumar; Camila Odio; John Fournier; Santos Bermejo; Shelli Farhadian; Charles S Dela Cruz; Akiko Iwasaki; Albert I Ko; Marie L Landry; Ellen F Foxman; Nathan D Grubaugh
Journal:  Nat Microbiol       Date:  2020-07-10       Impact factor: 30.964

7.  Efficient high-throughput SARS-CoV-2 testing to detect asymptomatic carriers.

Authors:  Noam Shental; Shlomia Levy; Vered Wuvshet; Shosh Skorniakov; Bar Shalem; Aner Ottolenghi; Yariv Greenshpan; Rachel Steinberg; Avishay Edri; Roni Gillis; Michal Goldhirsh; Khen Moscovici; Sinai Sachren; Lilach M Friedman; Lior Nesher; Yonat Shemer-Avni; Angel Porgador; Tomer Hertz
Journal:  Sci Adv       Date:  2020-09-11       Impact factor: 14.136

8.  Pooling RT-qPCR testing for SARS-CoV-2 in 1000 individuals of healthy and infection-suspected patients.

Authors:  Yosuke Hirotsu; Makoto Maejima; Masahiro Shibusawa; Yuki Nagakubo; Kazuhiro Hosaka; Kenji Amemiya; Hitomi Sueki; Miyoko Hayakawa; Hitoshi Mochizuki; Toshiharu Tsutsui; Yumiko Kakizaki; Yoshihiro Miyashita; Masao Omata
Journal:  Sci Rep       Date:  2020-11-03       Impact factor: 4.379

9.  Optimization of group size in pool testing strategy for SARS-CoV-2: A simple mathematical model.

Authors:  Diego Aragón-Caqueo; Javier Fernández-Salinas; David Laroze
Journal:  J Med Virol       Date:  2020-05-03       Impact factor: 20.693

10.  Pooling of samples for testing for SARS-CoV-2 in asymptomatic people.

Authors:  Stefan Lohse; Thorsten Pfuhl; Barbara Berkó-Göttel; Jürgen Rissland; Tobias Geißler; Barbara Gärtner; Sören L Becker; Sophie Schneitler; Sigrun Smola
Journal:  Lancet Infect Dis       Date:  2020-04-28       Impact factor: 71.421

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  3 in total

Review 1.  Strategies for Scaling up SARS-CoV-2 Molecular Testing Capacity.

Authors:  Sanchita Das; Karen M Frank
Journal:  Clin Lab Med       Date:  2022-03-08       Impact factor: 2.172

2.  Sample-Pooling Strategy for SARS-CoV-2 Detection among Students and Staff of the University of Sannio.

Authors:  Immacolata Polvere; Elena Silvestri; Lina Sabatino; Antonia Giacco; Stefania Iervolino; Teresa Peluso; Rosa Guida; Lucrezia Zerillo; Romualdo Varricchio; Silvia D'Andrea; Serena Voccola; Jessica Raffaella Madera; Alberto Zullo; Romania Stilo; Pasquale Vito; Tiziana Zotti
Journal:  Diagnostics (Basel)       Date:  2021-06-26

3.  Evaluation of FAST COVID-19 SARS-CoV-2 Antigen Rapid Test Kit for Detection of SARS-CoV-2 in Respiratory Samples from Mildly Symptomatic or Asymptomatic Patients.

Authors:  Immacolata Polvere; Serena Voccola; Silvia D'Andrea; Lucrezia Zerillo; Romualdo Varricchio; Jessica Raffaella Madera; Romania Stilo; Pasquale Vito; Tiziana Zotti
Journal:  Diagnostics (Basel)       Date:  2022-03-07
  3 in total

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