| Literature DB >> 35328046 |
Hossam Hodeib1, Dina Abd El Hai1, Mohamed A Tawfik2, Alzahraa A Allam2, Amal Selim2, Abdallah Ahmed Elsawy2, Amira Youssef1.
Abstract
INTRODUCTION: The onset of the Philadelphia chromosome-negative myeloproliferative neoplasms (MPNs) is caused by acquired somatic mutations in target myeloid genes "driver mutations". The CCL2 gene is overexpressed by non-Hodgkin lymphomas and multiple solid tumors. AIM OF THE STUDY: to evaluate the possible association of CCL2 rs1024611 SNP and its expression level and the risk of developing Philadelphia-negative MPNs. PATIENTS AND METHODS: A total of 128 newly diagnosed Philadelphia-negative MPN patient and 141 healthy subjects were evaluated for the genotype distribution of CCL2 rs1024611 and CCL2 expression levels.Entities:
Keywords: CCL2 rs1024611Gene; Philadelphia; myeloproliferative; polymorphism
Mesh:
Substances:
Year: 2022 PMID: 35328046 PMCID: PMC8948730 DOI: 10.3390/genes13030492
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Demographic, clinical, and laboratory data of Philadelphia-negative MPNs patients (at time of diagnosis) and healthy subjects.
| PV | ET | PMF | Post-PV/ET-MF | Healthy Subjects | Test of Sig. |
| |
|---|---|---|---|---|---|---|---|
|
| |||||||
| Mean ± SD. | 63.77 ± 6.02 | 62.03 ± 5.01 | 63.33 ± 4.78 | 65.41 ± 4.46 | 63.26 ± 4.75 | F = 1.691 | 0.152 |
| Median (Min.–Max.) | 65 (52–72) | 62 (50–71) | 64 (55–72) | 66 (58–73) | 64 (53–72) | ||
|
| |||||||
| Male | 23 (52.3%) | 18 (47.4%) | 12 (50.0%) | 12 (54.5%) | 73 (51.8%) | χ2 = 0.373 | 0.985 |
| Female | 21 (47.7%) | 20 (52.6%) | 12 (50.0%) | 10 (45.5%) | 68 (48.2%) | ||
|
| |||||||
| Mean ± SD. | 17.56 ± 0.54 | 13.95 ± 0.62 | 10.90 ± 1.92 | 10.68 ± 1.64 | 13.56 ± 0.93 | F = 238.881 * | <0.001 * |
| Median | 17.30 | 13.80 | 11.30 | 10.55 | 13.60 | ||
| (Min.–Max.) | (17.0–18.60) | (13.0–15.10) | (7.10–13.40) | (6.90–13.10) | (12.10–15.10) | ||
|
| |||||||
| Mean ± SD. | 12.14 ± 1.62 | 8.40 ± 1.17 | 12.67 ± 6.87 | 13.05 ± 7.31 | 7.24 ± 1.77 | H = 111.406 * | <0.001 * |
| Median | 12.0 | 8.30 | 9.90 | 10.65 | 7.30 | ||
| (Min.–Max.) | (9.60–14.40) | (6.10–10.30) | (4.40–27.30) | (4.40–29.20) | (4.30–9.80) | ||
|
| |||||||
| Mean ± SD. | 595.6 ± 92.16 | 812.8 ± 111.5 | 456.5 ± 229.1 | 443.5 ± 168.9 | 284.4 ± 55.84 | H = 168.231 * | <0.001 * |
| Median | 591.0 | 822.0 | 493.0 | 477.0 | 283.0 | ||
| (Min.–Max.) | (463–752) | (623–991) | (122–780) | (118–694) | (189.0–392.0) | ||
|
| 44 (100%) | 21 (55.3%) | 16 (66.7%) | 19 (86.4%) | NA | χ2 = 26.659 * | <0.001 * |
|
| NA | 9 (23.7%) | 7 (29.2%) | 0 (0.0%) | NA | χ2 = 20.924 * | MCp < 0.001 * |
|
| NA | 4 (10.5%) | 3 (12.5%) | 0 (0.0%) | NA | χ2 = 7.435 * | MCp = 0.024 * |
|
| NA | 7 (18.4%) | 2 (8.3%) | 3 (13.6%) | NA | χ2 = 9.833 | MCp = 0.010 * |
|
| |||||||
|
| 31 (100.0%) | 38 (100.0%) | 8 (33.3%) | 4 (18.2%) | NA | χ2 = 73.673 * | <0.001 * |
|
| 0 (0.0%) | 0 (0.0%) | 16 (66.7%) | 18 (81.8%) | NA | ||
|
| 18 (40.9%) | 12 (31.6%) | 8 (33.3%) | 8 (36.4%) | NA | χ2 = 0.858 | 0.835 |
|
| 1 (2.3%) | 1 (2.6%) | 3 (12.5%) | 3 (13.6%) | NA | χ2 = 5.388 | MCp= 0.100 |
|
| 12 (27.3%) | 13 (34.2%) | 5 (20.8%) | 5 (22.7%) | NA | χ2 = 1.650 | 0.648 |
|
| NA | NA | NA | 7.41 ± 2.26 | NA | ||
|
| |||||||
| Mean ± SD. | 3.3 ± 4.3 | 1.4 ± 2.2 | 5.7 ± 5.4 | 7.4 ± 7.3 | 0 ± 0 | H = 154.030 * | <0.001 * |
| Median (Min.–Max.) | 1 (0–15) | 1 (0–10) | 4.5 (0–21) | 6 (0–24) | 0 (0–0) | ||
|
| |||||||
| Low/intermediate-1 | NA | NA | 9 (37.5%) | 7 (31.8%) | NA | χ2 = 0.163 | 0.686 |
| Intermediate-2/high | NA | NA | 15 (62.5%) | 15 (68.2%) | NA | ||
|
| 1 (2.3%) | 0 (0%) | 16 (66.7%) | 18 (81.8%) | NA | χ2 = 79.762 * | <0.001 * |
|
| 3 (6.8%) | 3 (7.9%) | 15 (62.5%) | 16 (72.7%) | NA | χ2 = 52.346 * | <0.001 * |
|
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| Mean ± SD. | 564.2 ± 150.6 | 503.9 ± 138.7 | 614.3 ± 225.7 | 781.4 ± 302.6 | 182.3 ± 22.6 | H = 204.215 * | <0.001 * |
| Median (Min.–Max.) | 517 (371–885) | 488 (290–766) | 644.5 (254–987) | 844 (281–1271) | 186 (137–218) |
SD: Standard deviation; χ2: Chi square test; MC: Monte Carlo; F: F for One way ANOVA test; H: H for Kruskal–Wallis test; p: p value for comparing between the studied groups; *: Statistically significant at p ≤ 0.05; NA: Not Analyzed.
Genotyping of CCL2 rs1024611 and risk allele frequency among Philadelphia-negative MPNs patients and healthy subjects.
| PV | ET | PMF | Post-PV/ET-MF | Healthy Subjects |
| |
|---|---|---|---|---|---|---|
|
| ||||||
|
| 23 (52.3%) | 19 (50.0%) | 10 (41.7%) | 9 (40.9%) | 76 (53.9%) | |
|
| 19 (43.2%) | 17 (44.7%) | 10 (41.7%) | 9 (40.9%) | 59 (41.8%) | |
|
| 2 (4.5%) | 2 (5.3%) | 4 (16.7%) | 4 (18.2%) | 6 (4.3%) | |
|
| 0.432 | 0.465 | 0.586 | 0.520 | 0.189 | |
|
| ||||||
|
| 65 (73.9%) | 55 (72.4%) | 30 (62.5%) | 27 (61.4%) | 211 (74.8%) | |
|
| 23 (26.1%) | 21 (27.6%) | 18 (37.5%) | 17 (38.6%) | 71 (25.2%) |
χ2: Chi square test; *: Statistically significant at p ≤ 0.05; HWp1: p value for Chi square for goodness of fit for Hardy–Weinberg equilibrium; p1: p value for comparing PV and Healthy Subjects, p2: p value for comparing ET and Healthy Subjects, p3: p value for PMF and Healthy Subjects, p4: p value for comparing Post-PV/ET-MF and Healthy Subjects.
The CCL2 rs1024611 SNP risk associated with the developing Philadelphia-negative MPNs.
| PV vs. Healthy Subjects | ET vs. Healthy Subjects | PMF vs. Healthy Subject | Post-PV/ET-MF vs. Healthy Subjects | |||||
|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| |
|
| ||||||||
|
| Ref. | Ref. | Ref. | Ref. | ||||
|
| 1.064 (0.53–2.14) | 0.861 | 1.153 (0.55–2.41) | 0.706 | 1.288 (0.50–3.30) | 0.598 | 1.288 (0.48–3.45) | 0.614 |
|
| 1.101 (0.21–5.83) | 0.910 | 1.333 (0.25–7.14) | 0.737 | 5.067 (1.22–21.1) | 0.026 * | 5.630 (1.33–23.80) | 0.019 * |
|
| 1.071 (0.21–5.51) | 0.934 | 1.250 (0.24–6.46) | 0.790 | 4.500 (1.17–17.35) | 0.029 * | 5.0 (1.29–19.43) | 0.020 * |
|
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|
| Ref. | Ref. | Ref. | Ref. | ||||
|
| 1.052 (0.61–1.82) | 0.857 | 1.135 (0.64–2.0) | 0.664 | 1.783 (0.94–3.39) | 0.078 | 1.761 (0.90–3.46) | 0.100 |
OR: Odds ratio; CI: Confidence interval; *: Statistically significant at p ≤ 0.05.
Figure 1Relative expression of CCL2 among Philadelphia-negative MPNs patients and healthy subjects.
Genotype–phenotype correlations in Philadelphia-negative MPNs patients (n = 128).
| CCL2 rs1024611 | Test of Sig. |
| |||
|---|---|---|---|---|---|
| AA ( | AG ( | GG ( | |||
|
| |||||
| Mean ± SD. | 63.51 ± 5.02 | 63.22 ± 5.70 | 64.25 ± 5.40 | F = 0.189 | 0.828 |
| Median (Min.–Max.) | 64.0 | 64.0 | 65.50 | ||
|
| |||||
| Male | 29 (47.5%) | 26 (47.3%) | 10 (83.3%) | χ2 = 5.615 | 0.060 |
| Female | 32 (52.5%) | 29 (52.7%) | 2 (16.7%) | ||
|
| |||||
| Mean ± SD. | 14.27 ± 3.0 | 14.11 ± 3.17 | 12.82 ± 2.94 | F = 1.129 | 0.327 |
| Median (Min.–Max.) | 14.60 | 13.80 | 12.20 | ||
|
| |||||
| Mean ± SD. | 11.23 ± 4.33 | 11.25 ± 4.80 | 11.69 ± 6.49 | H = 0.202 | 0.904 |
| Median (Min.–Max.) | 10.30 (4.90–29.20) | 10.20 (4.40–27.30) | 9.65 (5.10–27.30) | ||
|
| |||||
| Mean ± SD. | 621.7 ± 201.1 | 607.3 ± 203.6 | 539.8 ± 242.4 | H = 1.290 | 0.525 |
| Median (Min.–Max.) | 635 (118–982) | 631 (122–977) | 518 (148–991) | ||
|
| 49 (80.3%) | 41 (74.5%) | 10 (83.3%) | χ2 = 0.776 | 0.678 |
|
| 8 (13.1%) | 6 (10.9%) | 2 (16.7%) | χ2 = 0.339 | 0.844 |
|
| 4 (6.6%) | 3 (5.5%) | 0 (0.0%) | χ2 = 0.362 | MCp = 1.000 |
|
| 4 (6.6%) | 7 (12.7%) | 1 (8.3%) | χ2 = 1.313 | 0.519 |
|
| ( | ( | ( | ||
|
| 41 (83.7%) | 36 (66.7%) | 4 (33.3%) | χ2 = 12.424 * | 0.002 * |
|
| 8 (16.3%) | 18 (33.3%) | 8 (66.7%) | ||
|
| |||||
| Mean ± SD. | 1.10 ± 0.49 | 1.88 ± 0.84 | 3.16 ± 1.12 | H = 47.665 * | <0.001 * |
| Median (Min.–Max.) | 0.91 (0.55–2.39) | 1.63 (0.56–3.48) | 3.54 (1.72–4.81) | ||
|
| 19 (31.1%) | 21 (38.2%) | 6 (50%) | χ2 = 1.759 | 0.415 |
|
| 3 (4.9%) | 3 (5.5%) | 2 (16.7%) | χ2 = 2.513 | MCp = 0.280 |
|
| 16 (26.2%) | 17 (30.9%) | 2 (16.7%) | χ2 = 1.079 | 0.583 |
|
| |||||
| Mean ± SD. | 8.56 ± 1.51 | 7.33 ± 2.60 | 5 ± 0 | H = 11.166 * | 0.004 * |
| Median (Min.–Max.) | 9 (5–10) | 6 (6–14) | 5 (5–5) | ||
|
| |||||
| Mean ± SD. | 3.61 ± 5.45 | 3.95 ± 4.60 | 5.17 ± 6.19 | H = 0.996 | 0.608 |
| Median (Min.–Max.) | 1 (0–24) | 2 (0–21) | 2 (0–18) | ||
|
| |||||
| Low/intermediate-1 | 15 (78.9%) | 1 (5.3%) | 0 (0%) | χ2 = 27.903 * | <0.001 * |
| Intermediate-2/high | 4 (21.1%) | 18 (94.7%) | 8 (100%) | ||
|
| 8 (13.1%) | 18 (32.7%) | 9 (75%) | χ2 = 20.737 * | <0.001 * |
|
| 5 (8.2%) | 23 (41.8%) | 9 (75%) | χ2 = 29.599 * | <0.001 * |
|
| |||||
| Mean ± SD. | 585.36 ± 206.41 | 611.13 ± 225.57 | 548.83 ± 226.16 | H = 0.844 | 0.656 |
| Median (Min.–Max.) | 514 (256–1271) | 602 (290–1266) | 555 (254–1010) | ||
SD: Standard deviation; H: H for Kruskal–Wallis test; χ2: Chi square test; F: F for One way ANOVA test; MC: Monte Carlo; *: Statistically significant at p ≤ 0.05; p: p value for comparing between the studied categories.
Figure 2ROC curve for relative expression of CCL2 to discriminate MF patients (PMF and Post-PV/ET-MF) (n = 46) from other subjects (n = 223).
Figure 3ROC curve for relative expression of CCL2 to discriminate MF patients (PMF and Post-PV/ET-MF) (n = 46) from PV and ET (n = 82).