Literature DB >> 35297760

The Digital Brain Bank, an open access platform for post-mortem imaging datasets.

Saad Jbabdi1, Rogier B Mars1,2, Karla L Miller1, Benjamin C Tendler1, Taylor Hanayik1, Olaf Ansorge3, Sarah Bangerter-Christensen3, Gregory S Berns4, Mads F Bertelsen5, Katherine L Bryant1, Sean Foxley1,6, Martijn P van den Heuvel7,8, Amy F D Howard1, Istvan N Huszar1, Alexandre A Khrapitchev9, Anna Leonte3, Paul R Manger10, Ricarda A L Menke1, Jeroen Mollink1, Duncan Mortimer1, Menuka Pallebage-Gamarallage3, Lea Roumazeilles11, Jerome Sallet11,12, Lianne H Scholtens7, Connor Scott3, Adele Smart1,3, Martin R Turner1,3, Chaoyue Wang1.   

Abstract

Post-mortem magnetic resonance imaging (MRI) provides the opportunity to acquire high-resolution datasets to investigate neuroanatomy and validate the origins of image contrast through microscopy comparisons. We introduce the Digital Brain Bank (open.win.ox.ac.uk/DigitalBrainBank), a data release platform providing open access to curated, multimodal post-mortem neuroimaging datasets. Datasets span three themes-Digital Neuroanatomist: datasets for detailed neuroanatomical investigations; Digital Brain Zoo: datasets for comparative neuroanatomy; and Digital Pathologist: datasets for neuropathology investigations. The first Digital Brain Bank data release includes 21 distinctive whole-brain diffusion MRI datasets for structural connectivity investigations, alongside microscopy and complementary MRI modalities. This includes one of the highest-resolution whole-brain human diffusion MRI datasets ever acquired, whole-brain diffusion MRI in fourteen nonhuman primate species, and one of the largest post-mortem whole-brain cohort imaging studies in neurodegeneration. The Digital Brain Bank is the culmination of our lab's investment into post-mortem MRI methodology and MRI-microscopy analysis techniques. This manuscript provides a detailed overview of our work with post-mortem imaging to date, including the development of diffusion MRI methods to image large post-mortem samples, including whole, human brains. Taken together, the Digital Brain Bank provides cross-scale, cross-species datasets facilitating the incorporation of post-mortem data into neuroimaging studies.
© 2022, Tendler et al.

Entities:  

Keywords:  MRI; Microscopy; comparative neuroanatomy; data resource; human; human neuroanatomy; neuropathology; neuroscience; post-mortem

Mesh:

Year:  2022        PMID: 35297760      PMCID: PMC9042233          DOI: 10.7554/eLife.73153

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.713


  92 in total

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2.  The Japan Monkey Centre Primates Brain Imaging Repository for comparative neuroscience: an archive of digital records including records for endangered species.

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Journal:  Primates       Date:  2018-10-24       Impact factor: 2.163

3.  Postmortem MRI of human brain hemispheres: T2 relaxation times during formaldehyde fixation.

Authors:  Robert J Dawe; David A Bennett; Julie A Schneider; Sunil K Vasireddi; Konstantinos Arfanakis
Journal:  Magn Reson Med       Date:  2009-04       Impact factor: 4.668

4.  Formalin fixed brains are useful for magnetic resonance imaging (MRI) study.

Authors:  H Nagara; T Inoue; T Koga; T Kitaguchi; J Tateishi; I Goto
Journal:  J Neurol Sci       Date:  1987-10       Impact factor: 3.181

5.  Widespread grey matter pathology dominates the longitudinal cerebral MRI and clinical landscape of amyotrophic lateral sclerosis.

Authors:  Ricarda A L Menke; Sonja Körner; Nicola Filippini; Gwenaëlle Douaud; Steven Knight; Kevin Talbot; Martin R Turner
Journal:  Brain       Date:  2014-06-20       Impact factor: 13.501

6.  Pathology of callosal damage in ALS: An ex-vivo, 7 T diffusion tensor MRI study.

Authors:  Agustin M Cardenas; Joelle E Sarlls; Justin Y Kwan; Devin Bageac; Zachary S Gala; Laura E Danielian; Abhik Ray-Chaudhury; Hao-Wei Wang; Karla L Miller; Sean Foxley; Saad Jbabdi; Robert C Welsh; Mary Kay Floeter
Journal:  Neuroimage Clin       Date:  2017-04-30       Impact factor: 4.881

7.  Improving diffusion-weighted imaging of post-mortem human brains: SSFP at 7 T.

Authors:  Sean Foxley; Saad Jbabdi; Stuart Clare; Wilfred Lam; Olaf Ansorge; Gwenaelle Douaud; Karla Miller
Journal:  Neuroimage       Date:  2014-08-13       Impact factor: 6.556

8.  Human and nonhuman primate meninges harbor lymphatic vessels that can be visualized noninvasively by MRI.

Authors:  Martina Absinta; Seung-Kwon Ha; Govind Nair; Pascal Sati; Nicholas J Luciano; Maryknoll Palisoc; Antoine Louveau; Kareem A Zaghloul; Stefania Pittaluga; Jonathan Kipnis; Daniel S Reich
Journal:  Elife       Date:  2017-10-03       Impact factor: 8.140

9.  Ex vivo diffusion MRI of the human brain: Technical challenges and recent advances.

Authors:  Alard Roebroeck; Karla L Miller; Manisha Aggarwal
Journal:  NMR Biomed       Date:  2018-06-04       Impact factor: 4.044

10.  7 Tesla MRI of the ex vivo human brain at 100 micron resolution.

Authors:  Brian L Edlow; Azma Mareyam; Andreas Horn; Jonathan R Polimeni; Thomas Witzel; M Dylan Tisdall; Jean C Augustinack; Jason P Stockmann; Bram R Diamond; Allison Stevens; Lee S Tirrell; Rebecca D Folkerth; Lawrence L Wald; Bruce Fischl; Andre van der Kouwe
Journal:  Sci Data       Date:  2019-10-30       Impact factor: 6.444

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  2 in total

1.  Structural Connectivity of Human Inferior Colliculus Subdivisions Using in vivo and post mortem Diffusion MRI Tractography.

Authors:  Kevin R Sitek; Evan Calabrese; G Allan Johnson; Satrajit S Ghosh; Bharath Chandrasekaran
Journal:  Front Neurosci       Date:  2022-03-22       Impact factor: 4.677

2.  Multimodal anatomy of the human forniceal commissure.

Authors:  Kevin Akeret; Stephanie J Forkel; Raphael M Buzzi; Flavio Vasella; Irmgard Amrein; Giovanni Colacicco; Carlo Serra; Niklaus Krayenbühl
Journal:  Commun Biol       Date:  2022-07-25
  2 in total

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