Literature DB >> 30357587

The Japan Monkey Centre Primates Brain Imaging Repository for comparative neuroscience: an archive of digital records including records for endangered species.

Tomoko Sakai1,2,3,4, Junichi Hata5,6,7, Hiroki Ohta6, Yuta Shintaku8,9, Naoto Kimura9, Yuki Ogawa6, Kazumi Sogabe10, Susumu Mori11,12, Hirotaka James Okano6, Yuzuru Hamada13, Shinsuke Shibata5, Hideyuki Okano5,7, Kenichi Oishi11.   

Abstract

Advances in magnetic resonance imaging (MRI) and computational analysis technology have enabled comparisons among various primate brains in a three-dimensional electronic format. Results from comparative studies provide information about common features across primates and species-specific features of neuroanatomy. Investigation of various species of non-human primates is important for understanding such features, but the majority of comparative MRI studies have been based on experimental primates, such as common marmoset, macaques, and chimpanzee. A major obstacle has been the lack of a database that includes non-experimental primates' brain MRIs. To facilitate scientific discoveries in the field of comparative neuroanatomy and brain evolution, we launched a collaborative project to develop an open-resource repository of non-human primate brain images obtained using ex vivo MRI. As an initial open resource, here we release a collection of structural MRI and diffusion tensor images obtained from 12 species: pygmy marmoset, owl monkey, white-fronted capuchin, crab-eating macaque, Japanese macaque, bonnet macaque, toque macaque, Sykes' monkey, red-tailed monkey, Schmidt's guenon, de Brazza's guenon, and lar gibbon. Sixteen postmortem brain samples from the 12 species, stored in the Japan Monkey Centre (JMC), were scanned using a 9.4-T MRI scanner and made available through the JMC collaborative research program ( http://www.j-monkey.jp/BIR/index_e.html ). The expected significant contributions of the JMC Primates Brain Imaging Repository include (1) resources for comparative neuroscience research, (2) preservation of various primate brains, including those of endangered species, in a permanent digital form, (3) resources with higher resolution for identifying neuroanatomical features, compared to previous MRI atlases, (4) resources for optimizing methods of scanning large fixed brains, and (5) references for veterinary neuroradiology. User-initiated research projects beyond these contributions are also anticipated.

Entities:  

Keywords:  Brain samples; Comparative neuroscience; Database; Diffusion tensor imaging; Endangered species; Evolution; Magnetic resonance imaging; Primate

Mesh:

Year:  2018        PMID: 30357587     DOI: 10.1007/s10329-018-0694-3

Source DB:  PubMed          Journal:  Primates        ISSN: 0032-8332            Impact factor:   2.163


  42 in total

1.  Volumetric analysis of the germinal matrix and lateral ventricles performed using MR images of postmortem fetuses.

Authors:  Y Kinoshita; T Okudera; E Tsuru; A Yokota
Journal:  AJNR Am J Neuroradiol       Date:  2001-02       Impact factor: 3.825

2.  Color schemes to represent the orientation of anisotropic tissues from diffusion tensor data: application to white matter fiber tract mapping in the human brain.

Authors:  S Pajevic; C Pierpaoli
Journal:  Magn Reson Med       Date:  1999-09       Impact factor: 4.668

3.  The shrinkage of the human brain stem during formalin fixation and embedding in paraffin.

Authors:  R Quester; R Schröder
Journal:  J Neurosci Methods       Date:  1997-07-18       Impact factor: 2.390

4.  Superficially located white matter structures commonly seen in the human and the macaque brain with diffusion tensor imaging.

Authors:  Kenichi Oishi; Hao Huang; Takashi Yoshioka; Sarah H Ying; David S Zee; Karl Zilles; Katrin Amunts; Roger Woods; Arthur W Toga; G Bruce Pike; Pedro Rosa-Neto; Alan C Evans; Peter C M van Zijl; John C Mazziotta; Susumu Mori
Journal:  Brain Connect       Date:  2011

5.  A universal scaling law between gray matter and white matter of cerebral cortex.

Authors:  K Zhang; T J Sejnowski
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

6.  Morphologic phenotyping with MR microscopy: the visible mouse.

Authors:  G Allan Johnson; Gary P Cofer; Sally L Gewalt; Laurence W Hedlund
Journal:  Radiology       Date:  2002-03       Impact factor: 11.105

7.  The human brain: rewired and running hot.

Authors:  Todd M Preuss
Journal:  Ann N Y Acad Sci       Date:  2011-05       Impact factor: 5.691

8.  Combining diffusion magnetic resonance tractography with stereology highlights increased cross-cortical integration in primates.

Authors:  Christine J Charvet; Patrick R Hof; Mary Ann Raghanti; Andre J Van Der Kouwe; Chet C Sherwood; Emi Takahashi
Journal:  J Comp Neurol       Date:  2016-11-22       Impact factor: 3.215

9.  Ependymal cyst in a cynomolgus macaque (Macaca fascicularis).

Authors:  Ingrid L Bergin; Brandy Campbell; Dalen W Agnew
Journal:  J Med Primatol       Date:  2008-05-05       Impact factor: 0.667

Review 10.  Primate comparative neuroscience using magnetic resonance imaging: promises and challenges.

Authors:  Rogier B Mars; Franz-Xaver Neubert; Lennart Verhagen; Jérôme Sallet; Karla L Miller; Robin I M Dunbar; Robert A Barton
Journal:  Front Neurosci       Date:  2014-10-06       Impact factor: 4.677

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  5 in total

1.  Evolution of Brain Connections: Integrating Diffusion MR Tractography With Gene Expression Highlights Increased Corticocortical Projections in Primates.

Authors:  Christine J Charvet; Arthi Palani; Priya Kabaria; Emi Takahashi
Journal:  Cereb Cortex       Date:  2019-12-17       Impact factor: 5.357

2.  The Digital Brain Bank, an open access platform for post-mortem imaging datasets.

Authors:  Saad Jbabdi; Rogier B Mars; Karla L Miller; Benjamin C Tendler; Taylor Hanayik; Olaf Ansorge; Sarah Bangerter-Christensen; Gregory S Berns; Mads F Bertelsen; Katherine L Bryant; Sean Foxley; Martijn P van den Heuvel; Amy F D Howard; Istvan N Huszar; Alexandre A Khrapitchev; Anna Leonte; Paul R Manger; Ricarda A L Menke; Jeroen Mollink; Duncan Mortimer; Menuka Pallebage-Gamarallage; Lea Roumazeilles; Jerome Sallet; Lianne H Scholtens; Connor Scott; Adele Smart; Martin R Turner; Chaoyue Wang
Journal:  Elife       Date:  2022-03-17       Impact factor: 8.713

3.  Tracing Modification to Cortical Circuits in Human and Nonhuman Primates from High-Resolution Tractography, Transcription, and Temporal Dimensions.

Authors:  Christine J Charvet; Kwadwo Ofori; Christine Baucum; Jianli Sun; Melinda S Modrell; Khan Hekmatyar; Brian L Edlow; Andre J van der Kouwe
Journal:  J Neurosci       Date:  2022-03-24       Impact factor: 6.167

4.  Large-scale comparative neuroimaging: Where are we and what do we need?

Authors:  Michel Thiebaut de Schotten; Paula L Croxson; Rogier B Mars
Journal:  Cortex       Date:  2018-12-08       Impact factor: 4.027

5.  Diffusion MRI data, sulcal anatomy, and tractography for eight species from the Primate Brain Bank.

Authors:  Katherine L Bryant; Dirk Jan Ardesch; Lea Roumazeilles; Lianne H Scholtens; Alexandre A Khrapitchev; Benjamin C Tendler; Wenchuan Wu; Karla L Miller; Jerome Sallet; Martijn P van den Heuvel; Rogier B Mars
Journal:  Brain Struct Funct       Date:  2021-07-15       Impact factor: 3.270

  5 in total

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