Literature DB >> 35254827

Dynamic Tuning in Synthetic Glycosidase for Selective Hydrolysis of Alkyl and Aryl Glycosides.

Kaiqian Chen1, Yan Zhao1.   

Abstract

Enzymes use sophisticated conformational control to optimize the dynamics of their protein framework for efficient catalysis. Although it is difficult to employ a similar strategy to improve catalysis in a synthetic enzyme, we here report that modulation of the dynamics of the substrate in the active site is readily achievable in a complex between a molecularly imprinted nanoparticle and its acid cofactor, through tuning of the size and shape of the imprinted site. As the alkyl glucoside substrate is bound with increasing strength and held in a more tightly fitted pocket, the acid-catalyzed glycan hydrolysis becomes more difficult. A larger, wider active site, although less able to bind the substrate, affords a higher catalytic activity, likely due to easier alignment of the substrate and the acid cofactor for a general acid catalysis. The substrate selectivity is controlled by both the tightness of the aglycon-binding site and the orientation of the glycan-binding boroxole group.

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Year:  2022        PMID: 35254827      PMCID: PMC9089355          DOI: 10.1021/acs.joc.1c03029

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.198


  35 in total

Review 1.  Enzyme-like catalysis by molecularly imprinted polymers.

Authors:  Günter Wulff
Journal:  Chem Rev       Date:  2002-01       Impact factor: 60.622

Review 2.  How do enzymes work?

Authors:  J Kraut
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3.  A General Method for Selective Recognition of Monosaccharides and Oligosaccharides in Water.

Authors:  Roshan W Gunasekara; Yan Zhao
Journal:  J Am Chem Soc       Date:  2017-01-03       Impact factor: 15.419

4.  Imprinted micelles for chiral recognition in water: shape, depth, and number of recognition sites.

Authors:  Joseph K Awino; Yan Zhao
Journal:  Org Biomol Chem       Date:  2017-06-07       Impact factor: 3.876

5.  An improved class of sugar-binding boronic acids, soluble and capable of complexing glycosides in neutral water.

Authors:  Meenakshi Dowlut; Dennis G Hall
Journal:  J Am Chem Soc       Date:  2006-04-05       Impact factor: 15.419

6.  Sequence-Selective Binding of Oligopeptides in Water through Hydrophobic Coding.

Authors:  Joseph K Awino; Roshan W Gunasekara; Yan Zhao
Journal:  J Am Chem Soc       Date:  2017-01-31       Impact factor: 15.419

7.  Remarkable supramolecular catalysis of glycoside hydrolysis by a cyclodextrin cyanohydrin.

Authors:  Fernando Ortega-Caballero; Cyril Rousseau; Brian Christensen; Torben Elleaek Petersen; Mikael Bols
Journal:  J Am Chem Soc       Date:  2005-03-16       Impact factor: 15.419

Review 8.  Sphingolipid metabolites in inflammatory disease.

Authors:  Michael Maceyka; Sarah Spiegel
Journal:  Nature       Date:  2014-06-05       Impact factor: 49.962

Review 9.  Functions of sphingolipids and sphingolipid breakdown products in cellular regulation.

Authors:  Y A Hannun; R M Bell
Journal:  Science       Date:  1989-01-27       Impact factor: 47.728

10.  Effects of nano-confinement and conformational mobility on molecular imprinting of cross-linked micelles.

Authors:  Kaiqian Chen; Yan Zhao
Journal:  Org Biomol Chem       Date:  2019-09-25       Impact factor: 3.876

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