| Literature DB >> 35241162 |
Vincent Denoël1, Olivier Bruyère2,3, Anne-Françoise Donneau4, Claude Saegerman5, Gilles Louppe6, Fabrice Bureau7,8,9, Vincent D'orio10, Sébastien Fontaine11, Laurent Gillet8,12, Michèle Guillaume4, Éric Haubruge13, Anne-Catherine Lange14, Fabienne Michel14, Romain Van Hulle1, Maarten Arnst15.
Abstract
BACKGROUND: The role played by large-scale repetitive SARS-CoV-2 screening programs within university populations interacting continuously with an urban environment, is unknown. Our objective was to develop a model capable of predicting the dispersion of viral contamination among university populations dividing their time between social and academic environments.Entities:
Keywords: COVID; Model; Pandemic; Screening; Student; University
Year: 2022 PMID: 35241162 PMCID: PMC8894091 DOI: 10.1186/s13690-022-00801-w
Source DB: PubMed Journal: Arch Public Health ISSN: 0778-7367
Fig. 1Graphic representation of the two-population model. A Susceptible-Exposed-Infected-Removed (SEIR) model was used for the external population (in red). An extended SEIR model was used for the university population (in blue). Arrows indicate transitions between compartments. In particular κ/β represents the relative importance of the university population mixing with the urban population
Main parameters of the model and their numerical values. In particular, transmission rates in urban and university populations are expressed by means of the reproduction numbers r0 and R0 in these two populations, respectively
| Symbols | Type | Units | Values | |
|---|---|---|---|---|
| Se | Test sensitivity | Fixed | [−] | 0.65 |
| Sp | Test specificity | Fixed | [−] | 0.99 |
| Return Rate of false positive | Fixed | [day−1] | 1/3 | |
| Rate of advance to asymptomatic | Fixed | [day−1] | 1/3 | |
| Rate of recovery | Fixed | [day−1] | 1/14 | |
| Rate of symptom development | Fixed | [%] | 30% | |
| Fatality risk | Fixed | [−] | 0.0005 | |
| Transmission rates (exogenous and endogenous) | Variable | [day−1] | [0.03–0.6] | |
| Reproduction number in external population | Identified | [−] | [0.6–3.5] | |
| Reproduction number in university population | Identified | [−] | [0.6–3.5] | |
| Size of external population | Variable | [indiv.] | {11.4e6; 0.6e3} | |
| Size of university population | Fixed | [indiv.] | [30,000] | |
| Testing frequency | Variable | [day−1] | {0, 1/7, 2/7} | |
| Participation rate | Variable | [%] | [0–100%] |
Values of the effective reproduction number identified in the 3 cross-contamination scenarios in a large university campus in Belgium during the first COVID-19 wave. The coupling index κ/β quantifies the importance of exogenous contamination in the university population; the population ratio corresponds to a coupling with the Belgian population (A) or with a regional population (B-C). The university population is n = 30,000 individuals
| Scenario | Coupling index | Population ratio | Identified reproduction numbers in the different time windows | |||
|---|---|---|---|---|---|---|
| Sept. 1st-Oct. 6th | Oct. 7th-Oct. 19th | Oct. 20th-Nov. 2nd | Nov. 3rd-Dec.15th | |||
| A | 0 | 380 | 1.77 [1.71; 1.83] | 2.92 [2.70; 3.15] | 1.85 [1.77; 1.92] | 0.66 [0.64; 0.68] |
| 3.02 [2.97; 3.07] | 3.85 [3.64; 4.06] | 1.85 [1.77; 1.92] | 0.66 [0.64; 0.68] | |||
| B | 0.25 | 20 | 1.67 [1.60; 1.75] | 2.54 [2.33; 2.75] | 1.73 [1.66; 1.79] | 0.64 [0.62; 0.66] |
| 2.71 [2.66; 2.76] | 3.77 [3.57; 3.98] | 1.73 [1.66; 1.79] | 0.64 [0.62; 0.66] | |||
| C | 0.5 | 20 | 1.58 [1.50; 1.67] | 2.18 [1.99; 2.37] | 1.62 [1.56; 1.68] | 0.62 [0.60; 0.65] |
| 2.49 [2.44; 2.55] | 3.69 [3.49; 3.88] | 1.62 [1.56; 1.68] | 0.62 [0.60; 0.65] | |||
Fig. 2Illustration of the identified reproduction numbers r0 and R0, and their 95%-Cis in Belgium during the first COVID-19 wave. Symbols A, B and C refer to three scenarios. Numerical values, see Table 2
Fig. 3The best-fit and the 95%-CI of the model output (scenario B) around a large Belgian university during the first COVID-19 wave. The greyed zone corresponds to the time window during which the screening has been organized
Uninfected individuals in the Belgian university population on December 3rd (5 weeks after the end of screening) expressed as a number of individuals and fraction of population. The last column indicates the average net differences with the alternative 1 (no screening)
| Alternative | Uninfected individuals in the university population on Dec. 3rd | Average Saving | ||
|---|---|---|---|---|
| Number of individuals | Fraction of population | Individuals | Fraction | |
| Reference case (really tested situation) | 8708 [8388; 9031] | 29.0% [28.0, 30.1%] | 1393 | 4.64% |
| Alternative 1: No screening | 7315 [7007; 7613] | 24.4% [23.4, 25.4%] | – | – |
| Alternative 2: 100% participation | 13,732 [13,419; 14,060] | 45.8% [44.7, 46.9%] | 6417 | 21.4% |
| Alternative 3: Start screening on Sept. 1st | 10,303 [9956; 10,649] | 34.3% [33.2, 35.5%] | 2988 | 10.0% |
| Alternative 4: Twice-a-week screening | 10,189 [9863; 10,530] | 34.0% [32.9, 35.1%] | 2874 | 9.6% |
| Alternative 5: Twice-a-week screening and 100% participation | 19,048 [18,837; 19,248] | 63.5% [62.8, 64.2%] | 11,733 | 39.1% |
Fig. 4Evolution of the pandemic as alternatives to the observed situation in anuniversity campus in Belgium during the first COVID-19 wave. From left to right: (a) cumulative number of positive results over the screening period, (b) number of exposed and asymptomatic individuals in the university population, indicating the number of people who were isolated after screening (c) number of uninfected individuals in the university population and number of immune individuals (recovered). Units: number of individuals
Fig. 5Comparison of the cumulated individuals extracted from the asymptomatic (transmission layer) compartment by means of either symptom development or positive screening results in an university campus in Belgium during the first COVID-19 wave. A 100% participation in screening (alternatives 2 and 5) shows a much better performance from this perspective
Nomenclature
| Symbols | Signification |
|---|---|
| n | Index of time step |
| State variables | |
| | Number of individuals in the |
| | Number of individuals in the |
| | Number of individuals in the |
| | Number of individuals in the |
| | Number of individuals in the |
| Parameters of the University model | |
| | Population size [individuals] |
| Se, Sp | Test sensitivity and specificity |
| β | Transmission rate (Asymptomatic → Uninfected) [day−1] |
| τ | Testing rate [day−1] |
| | Percentage of participation to testing [−] |
| μ | Rate of return to testing pool after isolation [day− 1] |
| θ | Incubation rate [day−1] |
| σ | Rate of symptom development [day−1] |
| ρ | Recovery rate [day−1] |
| δ | Death rate [day−1] |
| Parameters of the external population model | |
| | Population size [individuals] |
| b | Transmission rate (infectious → susceptible) [day−1] |
| q | Incubation rate [day−1] |
| r | Recovery + symptom development rate [day−1] |
| Coupling between the two populations | |
| κ, k | Cross-transmission rates [day−1] |