Literature DB >> 35235010

The N-terminal domain of TET1 promotes the formation of dense chromatin regions refractory to transcription.

Audrey Lejart1, Siham Zentout1, Catherine Chapuis1, Ostiane D'Augustin1,2, Rebecca Smith1, Gilles Salbert3, Sébastien Huet4,5.   

Abstract

TET (ten-eleven translocation) enzymes initiate active cytosine demethylation via the oxidation of 5-methylcytosine. TET1 is composed of a C-terminal domain, which bears the catalytic activity of the enzyme, and a N-terminal region that is less well characterized except for the CXXC domain responsible for the targeting to CpG islands. While cytosine demethylation induced by TET1 promotes transcription, this protein also interacts with chromatin-regulating factors that rather silence this process, the coordination between these two opposite functions of TET1 being unclear. In the present work, we uncover a new function of the N-terminal part of the TET1 protein in the regulation of the chromatin architecture. This domain of the protein promotes the establishment of a compact chromatin architecture displaying reduced exchange rate of core histones and partial dissociation of the histone linker. This chromatin reorganization process, which does not rely on the CXXC domain, is associated with a global shutdown of transcription and an increase in heterochromatin-associated histone epigenetic marks. Based on these findings, we propose that the dense chromatin organization generated by the N-terminal domain of TET1 could contribute to restraining the transcription enhancement induced by the DNA demethylation activity of this enzyme.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Chromatin; DNA hydroxymethylation; DNA methylation; Fluorescence microscopy; Ten-eleven translocation enzyme; Transcription

Mesh:

Substances:

Year:  2022        PMID: 35235010     DOI: 10.1007/s00412-022-00769-0

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  32 in total

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2.  A guided tour into subcellular colocalization analysis in light microscopy.

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Journal:  J Microsc       Date:  2006-12       Impact factor: 1.758

3.  Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin.

Authors:  Aurélien Bancaud; Sébastien Huet; Nathalie Daigle; Julien Mozziconacci; Joël Beaudouin; Jan Ellenberg
Journal:  EMBO J       Date:  2009-12-16       Impact factor: 11.598

4.  Biophysics of Chromatin Dynamics.

Authors:  Beat Fierz; Michael G Poirier
Journal:  Annu Rev Biophys       Date:  2019-03-18       Impact factor: 12.981

5.  DNA demethylation dynamics.

Authors:  Nidhi Bhutani; David M Burns; Helen M Blau
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

6.  Crystal structure of TET2-DNA complex: insight into TET-mediated 5mC oxidation.

Authors:  Lulu Hu; Ze Li; Jingdong Cheng; Qinhui Rao; Wei Gong; Mengjie Liu; Yujiang Geno Shi; Jiayu Zhu; Ping Wang; Yanhui Xu
Journal:  Cell       Date:  2013-12-05       Impact factor: 41.582

7.  Different binding properties and function of CXXC zinc finger domains in Dnmt1 and Tet1.

Authors:  Carina Frauer; Andrea Rottach; Daniela Meilinger; Sebastian Bultmann; Karin Fellinger; Stefan Hasenöder; Mengxi Wang; Weihua Qin; Johannes Söding; Fabio Spada; Heinrich Leonhardt
Journal:  PLoS One       Date:  2011-02-02       Impact factor: 3.240

8.  Loss of linker histone H1 in cellular senescence.

Authors:  Ryo Funayama; Motoki Saito; Hiroko Tanobe; Fuyuki Ishikawa
Journal:  J Cell Biol       Date:  2006-12-11       Impact factor: 10.539

9.  Phosphorylation of TET proteins is regulated via O-GlcNAcylation by the O-linked N-acetylglucosamine transferase (OGT).

Authors:  Christina Bauer; Klaus Göbel; Nagarjuna Nagaraj; Christian Colantuoni; Mengxi Wang; Udo Müller; Elisabeth Kremmer; Andrea Rottach; Heinrich Leonhardt
Journal:  J Biol Chem       Date:  2015-01-07       Impact factor: 5.157

10.  A novel isoform of TET1 that lacks a CXXC domain is overexpressed in cancer.

Authors:  Charly R Good; Jozef Madzo; Bela Patel; Shinji Maegawa; Nora Engel; Jaroslav Jelinek; Jean-Pierre J Issa
Journal:  Nucleic Acids Res       Date:  2017-08-21       Impact factor: 16.971

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