Literature DB >> 30883217

Biophysics of Chromatin Dynamics.

Beat Fierz1, Michael G Poirier2.   

Abstract

Nucleosomes and chromatin control eukaryotic genome accessibility and thereby regulate DNA processes, including transcription, replication, and repair. Conformational dynamics within the nucleosome and chromatin structure play a key role in this regulatory function. Structural fluctuations continuously expose internal DNA sequences and nucleosome surfaces, thereby providing transient access for the nuclear machinery. Progress in structural studies of nucleosomes and chromatin has provided detailed insight into local chromatin organization and has set the stage for recent in-depth investigations of the structural dynamics of nucleosomes and chromatin fibers. Here, we discuss the dynamic processes observed in chromatin over different length scales and timescales and review current knowledge about the biophysics of distinct structural transitions.

Keywords:  chromatin; histone octamer; histone posttranslational modifications; histone tails; linker DNA; nucleosome; structural dynamics

Year:  2019        PMID: 30883217     DOI: 10.1146/annurev-biophys-070317-032847

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  27 in total

1.  Variable impact of conformationally distinct DNA lesions on nucleosome structure and dynamics: Implications for nucleotide excision repair.

Authors:  Yuqin Cai; Nicholas E Geacintov; Suse Broyde
Journal:  DNA Repair (Amst)       Date:  2019-12-28

2.  Ensembles of Breathing Nucleosomes: A Computational Study.

Authors:  Koen van Deelen; Helmut Schiessel; Lennart de Bruin
Journal:  Biophys J       Date:  2019-12-12       Impact factor: 4.033

Review 3.  Histone Tail Conformations: A Fuzzy Affair with DNA.

Authors:  Mohamed Ghoneim; Harrison A Fuchs; Catherine A Musselman
Journal:  Trends Biochem Sci       Date:  2021-02-04       Impact factor: 13.807

4.  Molecular dynamics simulations reveal how H3K56 acetylation impacts nucleosome structure to promote DNA exposure for lesion sensing.

Authors:  Iwen Fu; Nicholas E Geacintov; Suse Broyde
Journal:  DNA Repair (Amst)       Date:  2021-08-08

5.  The N-terminal domain of TET1 promotes the formation of dense chromatin regions refractory to transcription.

Authors:  Audrey Lejart; Siham Zentout; Catherine Chapuis; Ostiane D'Augustin; Rebecca Smith; Gilles Salbert; Sébastien Huet
Journal:  Chromosoma       Date:  2022-03-02       Impact factor: 4.316

6.  Structural basis of nucleosome-dependent cGAS inhibition.

Authors:  Joshua A Boyer; Cathy J Spangler; Joshua D Strauss; Andrew P Cesmat; Pengda Liu; Robert K McGinty; Qi Zhang
Journal:  Science       Date:  2020-09-10       Impact factor: 47.728

7.  Nucleosome plasticity is a critical element of chromatin liquid-liquid phase separation and multivalent nucleosome interactions.

Authors:  Stephen E Farr; Esmae J Woods; Jerelle A Joseph; Adiran Garaizar; Rosana Collepardo-Guevara
Journal:  Nat Commun       Date:  2021-05-17       Impact factor: 14.919

8.  Quantifying epigenetic modulation of nucleosome breathing by high-throughput AFM imaging.

Authors:  Sebastian F Konrad; Willem Vanderlinden; Jan Lipfert
Journal:  Biophys J       Date:  2022-01-20       Impact factor: 4.033

9.  Arabidopsis CHROMATIN REMODELING 19 acts as a transcriptional repressor and contributes to plant pathogen resistance.

Authors:  Huijia Kang; Yuhao Liu; Tianyi Fan; Jing Ma; Di Wu; Thierry Heitz; Wen-Hui Shen; Yan Zhu
Journal:  Plant Cell       Date:  2022-03-04       Impact factor: 11.277

Review 10.  Engineered Sortases in Peptide and Protein Chemistry.

Authors:  Christian Freund; Dirk Schwarzer
Journal:  Chembiochem       Date:  2021-02-03       Impact factor: 3.164

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