Literature DB >> 35210933

Transfer Learning for High-Dimensional Linear Regression: Prediction, Estimation and Minimax Optimality.

Sai Li1, T Tony Cai2, Hongzhe Li3.   

Abstract

This paper considers estimation and prediction of a high-dimensional linear regression in the setting of transfer learning where, in addition to observations from the target model, auxiliary samples from different but possibly related regression models are available. When the set of informative auxiliary studies is known, an estimator and a predictor are proposed and their optimality is established. The optimal rates of convergence for prediction and estimation are faster than the corresponding rates without using the auxiliary samples. This implies that knowledge from the informative auxiliary samples can be transferred to improve the learning performance of the target problem. When the set of informative auxiliary samples is unknown, we propose a data-driven procedure for transfer learning, called Trans-Lasso, and show its robustness to non-informative auxiliary samples and its efficiency in knowledge transfer. The proposed procedures are demonstrated in numerical studies and are applied to a dataset concerning the associations among gene expressions. It is shown that Trans-Lasso leads to improved performance in gene expression prediction in a target tissue by incorporating data from multiple different tissues as auxiliary samples.

Entities:  

Year:  2021        PMID: 35210933      PMCID: PMC8863181          DOI: 10.1111/rssb.12479

Source DB:  PubMed          Journal:  J R Stat Soc Series B Stat Methodol        ISSN: 1369-7412            Impact factor:   4.488


  19 in total

Review 1.  Detecting shared pathogenesis from the shared genetics of immune-related diseases.

Authors:  Alexandra Zhernakova; Cleo C van Diemen; Cisca Wijmenga
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

2.  Exploring regulation in tissues with eQTL networks.

Authors:  Maud Fagny; Joseph N Paulson; Marieke L Kuijjer; Abhijeet R Sonawane; Cho-Yi Chen; Camila M Lopes-Ramos; Kimberly Glass; John Quackenbush; John Platig
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-29       Impact factor: 11.205

3.  Polygenic scores via penalized regression on summary statistics.

Authors:  Timothy Shin Heng Mak; Robert Milan Porsch; Shing Wan Choi; Xueya Zhou; Pak Chung Sham
Journal:  Genet Epidemiol       Date:  2017-05-08       Impact factor: 2.135

4.  Transfer Learning for High-Dimensional Linear Regression: Prediction, Estimation and Minimax Optimality.

Authors:  Sai Li; T Tony Cai; Hongzhe Li
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2021-11-16       Impact factor: 4.488

5.  The joint graphical lasso for inverse covariance estimation across multiple classes.

Authors:  Patrick Danaher; Pei Wang; Daniela M Witten
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2014-03       Impact factor: 4.488

6.  Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning.

Authors:  Hoo-Chang Shin; Holger R Roth; Mingchen Gao; Le Lu; Ziyue Xu; Isabella Nogues; Jianhua Yao; Daniel Mollura; Ronald M Summers
Journal:  IEEE Trans Med Imaging       Date:  2016-02-11       Impact factor: 10.048

7.  Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.

Authors: 
Journal:  Cell       Date:  2019-12-12       Impact factor: 41.582

8.  Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs.

Authors:  S Hong Lee; Stephan Ripke; Benjamin M Neale; Stephen V Faraone; Shaun M Purcell; Roy H Perlis; Bryan J Mowry; Anita Thapar; Michael E Goddard; John S Witte; Devin Absher; Ingrid Agartz; Huda Akil; Farooq Amin; Ole A Andreassen; Adebayo Anjorin; Richard Anney; Verneri Anttila; Dan E Arking; Philip Asherson; Maria H Azevedo; Lena Backlund; Judith A Badner; Anthony J Bailey; Tobias Banaschewski; Jack D Barchas; Michael R Barnes; Thomas B Barrett; Nicholas Bass; Agatino Battaglia; Michael Bauer; Mònica Bayés; Frank Bellivier; Sarah E Bergen; Wade Berrettini; Catalina Betancur; Thomas Bettecken; Joseph Biederman; Elisabeth B Binder; Donald W Black; Douglas H R Blackwood; Cinnamon S Bloss; Michael Boehnke; Dorret I Boomsma; Gerome Breen; René Breuer; Richard Bruggeman; Paul Cormican; Nancy G Buccola; Jan K Buitelaar; William E Bunney; Joseph D Buxbaum; William F Byerley; Enda M Byrne; Sian Caesar; Wiepke Cahn; Rita M Cantor; Miguel Casas; Aravinda Chakravarti; Kimberly Chambert; Khalid Choudhury; Sven Cichon; C Robert Cloninger; David A Collier; Edwin H Cook; Hilary Coon; Bru Cormand; Aiden Corvin; William H Coryell; David W Craig; Ian W Craig; Jennifer Crosbie; Michael L Cuccaro; David Curtis; Darina Czamara; Susmita Datta; Geraldine Dawson; Richard Day; Eco J De Geus; Franziska Degenhardt; Srdjan Djurovic; Gary J Donohoe; Alysa E Doyle; Jubao Duan; Frank Dudbridge; Eftichia Duketis; Richard P Ebstein; Howard J Edenberg; Josephine Elia; Sean Ennis; Bruno Etain; Ayman Fanous; Anne E Farmer; I Nicol Ferrier; Matthew Flickinger; Eric Fombonne; Tatiana Foroud; Josef Frank; Barbara Franke; Christine Fraser; Robert Freedman; Nelson B Freimer; Christine M Freitag; Marion Friedl; Louise Frisén; Louise Gallagher; Pablo V Gejman; Lyudmila Georgieva; Elliot S Gershon; Daniel H Geschwind; Ina Giegling; Michael Gill; Scott D Gordon; Katherine Gordon-Smith; Elaine K Green; Tiffany A Greenwood; Dorothy E Grice; Magdalena Gross; Detelina Grozeva; Weihua Guan; Hugh Gurling; Lieuwe De Haan; Jonathan L Haines; Hakon Hakonarson; Joachim Hallmayer; Steven P Hamilton; Marian L Hamshere; Thomas F Hansen; Annette M Hartmann; Martin Hautzinger; Andrew C Heath; Anjali K Henders; Stefan Herms; Ian B Hickie; Maria Hipolito; Susanne Hoefels; Peter A Holmans; Florian Holsboer; Witte J Hoogendijk; Jouke-Jan Hottenga; Christina M Hultman; Vanessa Hus; Andrés Ingason; Marcus Ising; Stéphane Jamain; Edward G Jones; Ian Jones; Lisa Jones; Jung-Ying Tzeng; Anna K Kähler; René S Kahn; Radhika Kandaswamy; Matthew C Keller; James L Kennedy; Elaine Kenny; Lindsey Kent; Yunjung Kim; George K Kirov; Sabine M Klauck; Lambertus Klei; James A Knowles; Martin A Kohli; Daniel L Koller; Bettina Konte; Ania Korszun; Lydia Krabbendam; Robert Krasucki; Jonna Kuntsi; Phoenix Kwan; Mikael Landén; Niklas Långström; Mark Lathrop; Jacob Lawrence; William B Lawson; Marion Leboyer; David H Ledbetter; Phil H Lee; Todd Lencz; Klaus-Peter Lesch; Douglas F Levinson; Cathryn M Lewis; Jun Li; Paul Lichtenstein; Jeffrey A Lieberman; Dan-Yu Lin; Don H Linszen; Chunyu Liu; Falk W Lohoff; Sandra K Loo; Catherine Lord; Jennifer K Lowe; Susanne Lucae; Donald J MacIntyre; Pamela A F Madden; Elena Maestrini; Patrik K E Magnusson; Pamela B Mahon; Wolfgang Maier; Anil K Malhotra; Shrikant M Mane; Christa L Martin; Nicholas G Martin; Manuel Mattheisen; Keith Matthews; Morten Mattingsdal; Steven A McCarroll; Kevin A McGhee; James J McGough; Patrick J McGrath; Peter McGuffin; Melvin G McInnis; Andrew McIntosh; Rebecca McKinney; Alan W McLean; Francis J McMahon; William M McMahon; Andrew McQuillin; Helena Medeiros; Sarah E Medland; Sandra Meier; Ingrid Melle; Fan Meng; Jobst Meyer; Christel M Middeldorp; Lefkos Middleton; Vihra Milanova; Ana Miranda; Anthony P Monaco; Grant W Montgomery; Jennifer L Moran; Daniel Moreno-De-Luca; Gunnar Morken; Derek W Morris; Eric M Morrow; Valentina Moskvina; Pierandrea Muglia; Thomas W Mühleisen; Walter J Muir; Bertram Müller-Myhsok; Michael Murtha; Richard M Myers; Inez Myin-Germeys; Michael C Neale; Stan F Nelson; Caroline M Nievergelt; Ivan Nikolov; Vishwajit Nimgaonkar; Willem A Nolen; Markus M Nöthen; John I Nurnberger; Evaristus A Nwulia; Dale R Nyholt; Colm O'Dushlaine; Robert D Oades; Ann Olincy; Guiomar Oliveira; Line Olsen; Roel A Ophoff; Urban Osby; Michael J Owen; Aarno Palotie; Jeremy R Parr; Andrew D Paterson; Carlos N Pato; Michele T Pato; Brenda W Penninx; Michele L Pergadia; Margaret A Pericak-Vance; Benjamin S Pickard; Jonathan Pimm; Joseph Piven; Danielle Posthuma; James B Potash; Fritz Poustka; Peter Propping; Vinay Puri; Digby J Quested; Emma M Quinn; Josep Antoni Ramos-Quiroga; Henrik B Rasmussen; Soumya Raychaudhuri; Karola Rehnström; Andreas Reif; Marta Ribasés; John P Rice; Marcella Rietschel; Kathryn Roeder; Herbert Roeyers; Lizzy Rossin; Aribert Rothenberger; Guy Rouleau; Douglas Ruderfer; Dan Rujescu; Alan R Sanders; Stephan J Sanders; Susan L Santangelo; Joseph A Sergeant; Russell Schachar; Martin Schalling; Alan F Schatzberg; William A Scheftner; Gerard D Schellenberg; Stephen W Scherer; Nicholas J Schork; Thomas G Schulze; Johannes Schumacher; Markus Schwarz; Edward Scolnick; Laura J Scott; Jianxin Shi; Paul D Shilling; Stanley I Shyn; Jeremy M Silverman; Susan L Slager; Susan L Smalley; Johannes H Smit; Erin N Smith; Edmund J S Sonuga-Barke; David St Clair; Matthew State; Michael Steffens; Hans-Christoph Steinhausen; John S Strauss; Jana Strohmaier; T Scott Stroup; James S Sutcliffe; Peter Szatmari; Szabocls Szelinger; Srinivasa Thirumalai; Robert C Thompson; Alexandre A Todorov; Federica Tozzi; Jens Treutlein; Manfred Uhr; Edwin J C G van den Oord; Gerard Van Grootheest; Jim Van Os; Astrid M Vicente; Veronica J Vieland; John B Vincent; Peter M Visscher; Christopher A Walsh; Thomas H Wassink; Stanley J Watson; Myrna M Weissman; Thomas Werge; Thomas F Wienker; Ellen M Wijsman; Gonneke Willemsen; Nigel Williams; A Jeremy Willsey; Stephanie H Witt; Wei Xu; Allan H Young; Timothy W Yu; Stanley Zammit; Peter P Zandi; Peng Zhang; Frans G Zitman; Sebastian Zöllner; Bernie Devlin; John R Kelsoe; Pamela Sklar; Mark J Daly; Michael C O'Donovan; Nicholas Craddock; Patrick F Sullivan; Jordan W Smoller; Kenneth S Kendler; Naomi R Wray
Journal:  Nat Genet       Date:  2013-08-11       Impact factor: 38.330

9.  Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.

Authors:  Yun R Li; Jin Li; Sihai D Zhao; Jonathan P Bradfield; Frank D Mentch; S Melkorka Maggadottir; Cuiping Hou; Debra J Abrams; Diana Chang; Feng Gao; Yiran Guo; Zhi Wei; John J Connolly; Christopher J Cardinale; Marina Bakay; Joseph T Glessner; Dong Li; Charlly Kao; Kelly A Thomas; Haijun Qiu; Rosetta M Chiavacci; Cecilia E Kim; Fengxiang Wang; James Snyder; Marylyn D Richie; Berit Flatø; Øystein Førre; Lee A Denson; Susan D Thompson; Mara L Becker; Stephen L Guthery; Anna Latiano; Elena Perez; Elena Resnick; Richard K Russell; David C Wilson; Mark S Silverberg; Vito Annese; Benedicte A Lie; Marilynn Punaro; Marla C Dubinsky; Dimitri S Monos; Caterina Strisciuglio; Annamaria Staiano; Erasmo Miele; Subra Kugathasan; Justine A Ellis; Jane E Munro; Kathleen E Sullivan; Carol A Wise; Helen Chapel; Charlotte Cunningham-Rundles; Struan F A Grant; Jordan S Orange; Patrick M A Sleiman; Edward M Behrens; Anne M Griffiths; Jack Satsangi; Terri H Finkel; Alon Keinan; Eline T Luning Prak; Constantin Polychronakos; Robert N Baldassano; Hongzhe Li; Brendan J Keating; Hakon Hakonarson
Journal:  Nat Med       Date:  2015-08-24       Impact factor: 87.241

10.  Bi-allelic JAM2 Variants Lead to Early-Onset Recessive Primary Familial Brain Calcification.

Authors:  Lucia V Schottlaender; Rosella Abeti; Zane Jaunmuktane; Carol Macmillan; Viorica Chelban; Benjamin O'Callaghan; John McKinley; Reza Maroofian; Stephanie Efthymiou; Alkyoni Athanasiou-Fragkouli; Raeburn Forbes; Marc P M Soutar; John H Livingston; Bernardett Kalmar; Orlando Swayne; Gary Hotton; Alan Pittman; João Ricardo Mendes de Oliveira; Maria de Grandis; Angela Richard-Loendt; Francesca Launchbury; Juri Althonayan; Gavin McDonnell; Aisling Carr; Suliman Khan; Christian Beetz; Atil Bisgin; Sevcan Tug Bozdogan; Amber Begtrup; Erin Torti; Linda Greensmith; Paola Giunti; Patrick J Morrison; Sebastian Brandner; Michel Aurrand-Lions; Henry Houlden
Journal:  Am J Hum Genet       Date:  2020-03-05       Impact factor: 11.025

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  4 in total

1.  Transfer Learning for High-Dimensional Linear Regression: Prediction, Estimation and Minimax Optimality.

Authors:  Sai Li; T Tony Cai; Hongzhe Li
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2021-11-16       Impact factor: 4.488

2.  Transfer learning in high-dimensional semiparametric graphical models with application to brain connectivity analysis.

Authors:  Yong He; Qiushi Li; Qinqin Hu; Lei Liu
Journal:  Stat Med       Date:  2022-06-21       Impact factor: 2.497

3.  Multiethnic polygenic risk prediction in diverse populations through transfer learning.

Authors:  Peixin Tian; Tsai Hor Chan; Yong-Fei Wang; Wanling Yang; Guosheng Yin; Yan Dora Zhang
Journal:  Front Genet       Date:  2022-08-19       Impact factor: 4.772

4.  Clinical time-to-event prediction enhanced by incorporating compatible related outcomes.

Authors:  Yan Gao; Yan Cui
Journal:  PLOS Digit Health       Date:  2022-05-26
  4 in total

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