Literature DB >> 35188657

Plant X-tender Toolbox for the Assembly and Expression of Multiple Transcriptional Units in Plants.

Tjaša Lukan1, Kristina Gruden2, Anna Coll2.   

Abstract

Plant synthetic biology requires the design of plant expression vectors with multiple transcriptional units, which can be challenging. Here we describe the use of Plant X-tender toolbox complemented with a plant grammar implemented in GenoCAD for design, cloning and delivery of several transcriptional units into the plant genome. Plant X-tender toolbox consists of a set of plant expression vectors and the protocols for the most efficient cloning of multiple transcriptional units into this novel vector set. Together with the plant grammar implemented in GenoCAD, the presented strategy allows the users to quickly design genetic modules and assemble them into Plant X-tender expression vectors for in planta functional studies or synthetic biology applications.
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  AssemblX; Cloning of multiple transcriptional units; GenoCAD; Plant X-tender; Plant expression vectors; Plant synthetic biology; Scarless assembly

Mesh:

Year:  2022        PMID: 35188657     DOI: 10.1007/978-1-0716-1791-5_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

1.  Enzymatic assembly of DNA molecules up to several hundred kilobases.

Authors:  Daniel G Gibson; Lei Young; Ray-Yuan Chuang; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Nat Methods       Date:  2009-04-12       Impact factor: 28.547

2.  GoldenBraid 2.0: a comprehensive DNA assembly framework for plant synthetic biology.

Authors:  Alejandro Sarrion-Perdigones; Marta Vazquez-Vilar; Jorge Palací; Bas Castelijns; Javier Forment; Peio Ziarsolo; José Blanca; Antonio Granell; Diego Orzaez
Journal:  Plant Physiol       Date:  2013-07       Impact factor: 8.340

Review 3.  TAR cloning: insights into gene function, long-range haplotypes and genome structure and evolution.

Authors:  Natalay Kouprina; Vladimir Larionov
Journal:  Nat Rev Genet       Date:  2006-10       Impact factor: 53.242

4.  A golden gate modular cloning toolbox for plants.

Authors:  Carola Engler; Mark Youles; Ramona Gruetzner; Tim-Martin Ehnert; Stefan Werner; Jonathan D G Jones; Nicola J Patron; Sylvestre Marillonnet
Journal:  ACS Synth Biol       Date:  2014-02-20       Impact factor: 5.110

5.  A BioBrick compatible strategy for genetic modification of plants.

Authors:  Patrick M Boyle; Devin R Burrill; Mara C Inniss; Christina M Agapakis; Aaron Deardon; Jonathan G DeWerd; Michael A Gedeon; Jacqueline Y Quinn; Morgan L Paull; Anugraha M Raman; Mark R Theilmann; Lu Wang; Julia C Winn; Oliver Medvedik; Kurt Schellenberg; Karmella A Haynes; Alain Viel; Tamara J Brenner; George M Church; Jagesh V Shah; Pamela A Silver
Journal:  J Biol Eng       Date:  2012-06-20       Impact factor: 4.355

6.  A modular cloning system for standardized assembly of multigene constructs.

Authors:  Ernst Weber; Carola Engler; Ramona Gruetzner; Stefan Werner; Sylvestre Marillonnet
Journal:  PLoS One       Date:  2011-02-18       Impact factor: 3.240

7.  GoldenBraid: an iterative cloning system for standardized assembly of reusable genetic modules.

Authors:  Alejandro Sarrion-Perdigones; Erica Elvira Falconi; Sara I Zandalinas; Paloma Juárez; Asun Fernández-del-Carmen; Antonio Granell; Diego Orzaez
Journal:  PLoS One       Date:  2011-07-07       Impact factor: 3.240

8.  SLiCE: a novel bacterial cell extract-based DNA cloning method.

Authors:  Yongwei Zhang; Uwe Werling; Winfried Edelmann
Journal:  Nucleic Acids Res       Date:  2012-01-12       Impact factor: 16.971

9.  Engineering BioBrick vectors from BioBrick parts.

Authors:  Reshma P Shetty; Drew Endy; Thomas F Knight
Journal:  J Biol Eng       Date:  2008-04-14       Impact factor: 4.355

10.  A one pot, one step, precision cloning method with high throughput capability.

Authors:  Carola Engler; Romy Kandzia; Sylvestre Marillonnet
Journal:  PLoS One       Date:  2008-11-05       Impact factor: 3.240

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