Literature DB >> 16983376

TAR cloning: insights into gene function, long-range haplotypes and genome structure and evolution.

Natalay Kouprina1, Vladimir Larionov.   

Abstract

The structural and functional analysis of mammalian genomes would benefit from the ability to isolate from multiple DNA samples any targeted chromosomal segment that is the size of an average human gene. A cloning technique that is based on transformation-associated recombination (TAR) in the yeast Saccharomyces cerevisiae satisfies this need. It is a unique tool to selectively recover chromosome segments that are up to 250 kb in length from complex genomes. In addition, TAR cloning can be used to characterize gene function and genome variation, including polymorphic structural rearrangements, mutations and the evolution of gene families, and for long-range haplotyping.

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Year:  2006        PMID: 16983376     DOI: 10.1038/nrg1943

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  53 in total

1.  A molecularly defined duplication set for the X chromosome of Drosophila melanogaster.

Authors:  Koen J T Venken; Ellen Popodi; Stacy L Holtzman; Karen L Schulze; Soo Park; Joseph W Carlson; Roger A Hoskins; Hugo J Bellen; Thomas C Kaufman
Journal:  Genetics       Date:  2010-09-27       Impact factor: 4.562

Review 2.  Human artificial chromosomes for gene delivery and the development of animal models.

Authors:  Yasuhiro Kazuki; Mitsuo Oshimura
Journal:  Mol Ther       Date:  2011-07-12       Impact factor: 11.454

3.  Organization of synthetic alphoid DNA array in human artificial chromosome (HAC) with a conditional centromere.

Authors:  Natalay Kouprina; Alexander Samoshkin; Indri Erliandri; Megumi Nakano; Hee-Sheung Lee; Haiging Fu; Yuichi Iida; Mirit Aladjem; Mitsuo Oshimura; Hiroshi Masumoto; William C Earnshaw; Vladimir Larionov
Journal:  ACS Synth Biol       Date:  2012-12-21       Impact factor: 5.110

4.  Exclusion of the 750-kb genetically unstable region at Xq27 as a candidate locus for prostate malignancy in HPCX1-linked families.

Authors:  Natalay Kouprina; Nicholas C O Lee; Adam Pavlicek; Alexander Samoshkin; Jung-Hyun Kim; Hee-Sheung Lee; Sudhir Varma; William C Reinhold; John Otstot; Greg Solomon; Sean Davis; Paul S Meltzer; Johanna Schleutker; Vladimir Larionov
Journal:  Genes Chromosomes Cancer       Date:  2012-06-26       Impact factor: 5.006

5.  Selective isolation of large segments from individual microbial genomes and environmental DNA samples using transformation-associated recombination cloning in yeast.

Authors:  Natalay Kouprina; Vladimir N Noskov; Vladimir Larionov
Journal:  Nat Protoc       Date:  2020-01-31       Impact factor: 13.491

6.  Direct cloning and heterologous expression of natural product biosynthetic gene clusters by transformation-associated recombination.

Authors:  Jia Jia Zhang; Kazuya Yamanaka; Xiaoyu Tang; Bradley S Moore
Journal:  Methods Enzymol       Date:  2019-03-21       Impact factor: 1.600

Review 7.  Genetic platforms for heterologous expression of microbial natural products.

Authors:  Jia Jia Zhang; Xiaoyu Tang; Bradley S Moore
Journal:  Nat Prod Rep       Date:  2019-06-14       Impact factor: 13.423

Review 8.  A new generation of human artificial chromosomes for functional genomics and gene therapy.

Authors:  Natalay Kouprina; William C Earnshaw; Hiroshi Masumoto; Vladimir Larionov
Journal:  Cell Mol Life Sci       Date:  2012-08-21       Impact factor: 9.261

9.  Reinvigorating natural product combinatorial biosynthesis with synthetic biology.

Authors:  Eunji Kim; Bradley S Moore; Yeo Joon Yoon
Journal:  Nat Chem Biol       Date:  2015-09       Impact factor: 15.040

10.  Localization of an hTERT repressor region on human chromosome 3p21.3 using chromosome engineering.

Authors:  Satoshi Abe; Hiromi Tanaka; Tomomi Notsu; Shin-Ichi Horike; Chikako Fujisaki; Dong-Lai Qi; Takahito Ohhira; David Gilley; Mitsuo Oshimura; Hiroyuki Kugoh
Journal:  Genome Integr       Date:  2010-05-26
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