Literature DB >> 35171481

Fluorescence Intensity-Based eIF2B's Guanine Nucleotide-Exchange Factor Activity Assay.

Yusuke Sekine1, David Ron2, Alisa F Zyryanova2.   

Abstract

Guanine nucleotide-exchange factors (GEFs) activate the function of guanine nucleotide-binding proteins (G-proteins) by promoting the exchange of GDP for GTP on the latter. Here, we describe a protocol for in vitro measurements of the GEF activity of eukaryotic translation initiation factor 2B, eIF2B, toward its substrate eIF2. This protocol provides a relatively simple method for determining the eIF2B's GEF activity in crude cell extracts. The eIF2 heterotrimeric substrate, with phosphorylated or unphosphorylated eIF2α, is prepared by immunoprecipitation, following subsequent loading of a fluorescent BODIPY-FL dye-attached GDP. The exchange of the bound fluorescent GDP molecule for an unlabeled one on eIF2 promoted by eIF2B is monitored kinetically using a fluorescence microplate reader.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Guanine nucleotide exchange factor (GEF); Guanine nucleotide-binding protein (G-protein); Integrated stress response (ISR); Translation; Translation initiation factor; eIF2; eIF2B

Mesh:

Substances:

Year:  2022        PMID: 35171481     DOI: 10.1007/978-1-0716-1975-9_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  28 in total

Review 1.  Regulation of translation initiation factor eIF2B at the hub of the integrated stress response.

Authors:  Graham D Pavitt
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-07-10       Impact factor: 9.957

Review 2.  Regulation of small GTPases by GEFs, GAPs, and GDIs.

Authors:  Jacqueline Cherfils; Mahel Zeghouf
Journal:  Physiol Rev       Date:  2013-01       Impact factor: 37.312

3.  Crystal structure of eukaryotic translation initiation factor 2B.

Authors:  Kazuhiro Kashiwagi; Mari Takahashi; Madoka Nishimoto; Takuya B Hiyama; Toshiaki Higo; Takashi Umehara; Kensaku Sakamoto; Takuhiro Ito; Shigeyuki Yokoyama
Journal:  Nature       Date:  2016-02-22       Impact factor: 49.962

4.  Structure of the nucleotide exchange factor eIF2B reveals mechanism of memory-enhancing molecule.

Authors:  Jordan C Tsai; Lakshmi E Miller-Vedam; Aditya A Anand; Priyadarshini Jaishankar; Henry C Nguyen; Adam R Renslo; Adam Frost; Peter Walter
Journal:  Science       Date:  2018-03-30       Impact factor: 47.728

5.  eIF2B and the Integrated Stress Response: A Structural and Mechanistic View.

Authors:  Assen Marintchev; Takuhiro Ito
Journal:  Biochemistry       Date:  2020-03-26       Impact factor: 3.162

6.  Binding of ISRIB reveals a regulatory site in the nucleotide exchange factor eIF2B.

Authors:  Alisa F Zyryanova; Félix Weis; Alexandre Faille; Akeel Abo Alard; Ana Crespillo-Casado; Yusuke Sekine; Heather P Harding; Felicity Allen; Leopold Parts; Christophe Fromont; Peter M Fischer; Alan J Warren; David Ron
Journal:  Science       Date:  2018-03-30       Impact factor: 47.728

7.  Structural basis for the inhibition of translation through eIF2α phosphorylation.

Authors:  Yuliya Gordiyenko; José Luis Llácer; V Ramakrishnan
Journal:  Nat Commun       Date:  2019-06-14       Impact factor: 14.919

8.  The structural basis of translational control by eIF2 phosphorylation.

Authors:  Tomas Adomavicius; Margherita Guaita; Yu Zhou; Martin D Jennings; Zakia Latif; Alan M Roseman; Graham D Pavitt
Journal:  Nat Commun       Date:  2019-05-13       Impact factor: 14.919

Review 9.  The integrated stress response.

Authors:  Karolina Pakos-Zebrucka; Izabela Koryga; Katarzyna Mnich; Mila Ljujic; Afshin Samali; Adrienne M Gorman
Journal:  EMBO Rep       Date:  2016-09-14       Impact factor: 8.807

Review 10.  Review: Translational GTPases.

Authors:  Cristina Maracci; Marina V Rodnina
Journal:  Biopolymers       Date:  2016-08       Impact factor: 2.505

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