Literature DB >> 26901872

Crystal structure of eukaryotic translation initiation factor 2B.

Kazuhiro Kashiwagi1,2,3, Mari Takahashi3, Madoka Nishimoto3, Takuya B Hiyama1,2, Toshiaki Higo2,3, Takashi Umehara2,3, Kensaku Sakamoto2,3, Takuhiro Ito1,2,3, Shigeyuki Yokoyama1,2,4.   

Abstract

Eukaryotic cells restrict protein synthesis under various stress conditions, by inhibiting the eukaryotic translation initiation factor 2B (eIF2B). eIF2B is the guanine nucleotide exchange factor for eIF2, a heterotrimeric G protein consisting of α-, β- and γ-subunits. eIF2B exchanges GDP for GTP on the γ-subunit of eIF2 (eIF2γ), and is inhibited by stress-induced phosphorylation of eIF2α. eIF2B is a heterodecameric complex of two copies each of the α-, β-, γ-, δ- and ε-subunits; its α-, β- and δ-subunits constitute the regulatory subcomplex, while the γ- and ε-subunits form the catalytic subcomplex. The three-dimensional structure of the entire eIF2B complex has not been determined. Here we present the crystal structure of Schizosaccharomyces pombe eIF2B with an unprecedented subunit arrangement, in which the α2β2δ2 hexameric regulatory subcomplex binds two γε dimeric catalytic subcomplexes on its opposite sides. A structure-based in vitro analysis by a surface-scanning site-directed photo-cross-linking method identified the eIF2α-binding and eIF2γ-binding interfaces, located far apart on the regulatory and catalytic subcomplexes, respectively. The eIF2γ-binding interface is located close to the conserved 'NF motif', which is important for nucleotide exchange. A structural model was constructed for the complex of eIF2B with phosphorylated eIF2α, which binds to eIF2B more strongly than the unphosphorylated form. These results indicate that the eIF2α phosphorylation generates the 'nonproductive' eIF2-eIF2B complex, which prevents nucleotide exchange on eIF2γ, and thus provide a structural framework for the eIF2B-mediated mechanism of stress-induced translational control.

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Year:  2016        PMID: 26901872     DOI: 10.1038/nature16991

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  47 in total

1.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

2.  Crystal structure of potato tuber ADP-glucose pyrophosphorylase.

Authors:  Xiangshu Jin; Miguel A Ballicora; Jack Preiss; James H Geiger
Journal:  EMBO J       Date:  2005-02-03       Impact factor: 11.598

3.  Identification of a regulatory subcomplex in the guanine nucleotide exchange factor eIF2B that mediates inhibition by phosphorylated eIF2.

Authors:  W Yang; A G Hinnebusch
Journal:  Mol Cell Biol       Date:  1996-11       Impact factor: 4.272

4.  Stress responses. Mutations in a translation initiation factor identify the target of a memory-enhancing compound.

Authors:  Yusuke Sekine; Alisa Zyryanova; Ana Crespillo-Casado; Peter M Fischer; Heather P Harding; David Ron
Journal:  Science       Date:  2015-04-09       Impact factor: 47.728

5.  PKR and GCN2 kinases and guanine nucleotide exchange factor eukaryotic translation initiation factor 2B (eIF2B) recognize overlapping surfaces on eIF2alpha.

Authors:  Madhusudan Dey; Bruce Trieselmann; Emily G Locke; Jingfang Lu; Chune Cao; Arvin C Dar; Thanuja Krishnamoorthy; Jinsheng Dong; Frank Sicheri; Thomas E Dever
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

6.  Mutations in the GCD7 subunit of yeast guanine nucleotide exchange factor eIF-2B overcome the inhibitory effects of phosphorylated eIF-2 on translation initiation.

Authors:  C R Vazquez de Aldana; A G Hinnebusch
Journal:  Mol Cell Biol       Date:  1994-05       Impact factor: 4.272

7.  Solution structure of human initiation factor eIF2alpha reveals homology to the elongation factor eEF1B.

Authors:  Takuhiro Ito; Assen Marintchev; Gerhard Wagner
Journal:  Structure       Date:  2004-09       Impact factor: 5.006

8.  Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin.

Authors:  G D Van Duyne; R F Standaert; P A Karplus; S L Schreiber; J Clardy
Journal:  J Mol Biol       Date:  1993-01-05       Impact factor: 5.469

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Biochemical effects of mutations in the gene encoding the alpha subunit of eukaryotic initiation factor (eIF) 2B associated with Vanishing White Matter disease.

Authors:  Noel C Wortham; Christopher G Proud
Journal:  BMC Med Genet       Date:  2015-08-19       Impact factor: 2.103

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  44 in total

1.  eIF2B Mechanisms of Action and Regulation: A Thermodynamic View.

Authors:  Andrew M Bogorad; Kai Ying Lin; Assen Marintchev
Journal:  Biochemistry       Date:  2018-02-20       Impact factor: 3.162

2.  Inhibition of the integrated stress response by viral proteins that block p-eIF2-eIF2B association.

Authors:  Huib H Rabouw; Linda J Visser; Tim C Passchier; Martijn A Langereis; Fan Liu; Piero Giansanti; Arno L W van Vliet; José G Dekker; Susanne G van der Grein; Jesús G Saucedo; Aditya A Anand; Mikael E Trellet; Alexandre M J J Bonvin; Peter Walter; Albert J R Heck; Raoul J de Groot; Frank J M van Kuppeveld
Journal:  Nat Microbiol       Date:  2020-07-20       Impact factor: 17.745

Review 3.  Therapeutic Opportunities in Eukaryotic Translation.

Authors:  Jennifer Chu; Jerry Pelletier
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-06-01       Impact factor: 10.005

4.  Structure of the nucleotide exchange factor eIF2B reveals mechanism of memory-enhancing molecule.

Authors:  Jordan C Tsai; Lakshmi E Miller-Vedam; Aditya A Anand; Priyadarshini Jaishankar; Henry C Nguyen; Adam R Renslo; Adam Frost; Peter Walter
Journal:  Science       Date:  2018-03-30       Impact factor: 47.728

5.  The Jigsaw Puzzle of mRNA Translation Initiation in Eukaryotes: A Decade of Structures Unraveling the Mechanics of the Process.

Authors:  Yaser Hashem; Joachim Frank
Journal:  Annu Rev Biophys       Date:  2018-03-01       Impact factor: 12.981

6.  Molecular Determinants of the Regulation of Development and Metabolism by Neuronal eIF2α Phosphorylation in Caenorhabditis elegans.

Authors:  Warakorn Kulalert; Harini Sadeeshkumar; Ying K Zhang; Frank C Schroeder; Dennis H Kim
Journal:  Genetics       Date:  2017-03-14       Impact factor: 4.562

7.  eIF2B and the Integrated Stress Response: A Structural and Mechanistic View.

Authors:  Assen Marintchev; Takuhiro Ito
Journal:  Biochemistry       Date:  2020-03-26       Impact factor: 3.162

8.  eIF2B-catalyzed nucleotide exchange and phosphoregulation by the integrated stress response.

Authors:  Lillian R Kenner; Aditya A Anand; Henry C Nguyen; Alexander G Myasnikov; Carolin J Klose; Lea A McGeever; Jordan C Tsai; Lakshmi E Miller-Vedam; Peter Walter; Adam Frost
Journal:  Science       Date:  2019-05-03       Impact factor: 47.728

9.  Binding of ISRIB reveals a regulatory site in the nucleotide exchange factor eIF2B.

Authors:  Alisa F Zyryanova; Félix Weis; Alexandre Faille; Akeel Abo Alard; Ana Crespillo-Casado; Yusuke Sekine; Heather P Harding; Felicity Allen; Leopold Parts; Christophe Fromont; Peter M Fischer; Alan J Warren; David Ron
Journal:  Science       Date:  2018-03-30       Impact factor: 47.728

Review 10.  The integrated stress response: From mechanism to disease.

Authors:  Mauro Costa-Mattioli; Peter Walter
Journal:  Science       Date:  2020-04-24       Impact factor: 47.728

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