| Literature DB >> 35164061 |
Anas Shamsi1,2, Moyad Shahwan2,3, Mohd Shahnawaz Khan4, Fahad A Alhumaydhi5, Suliman A Alsagaby6, Waleed Al Abdulmonem7, Bekhzod Abdullaev8, Dharmendra Kumar Yadav9.
Abstract
Human serum albumin (HSA) is the most abundant protein in plasma synthesized by the liver and the main modulator of fluid distribution between body compartments. It has an amazing capacity to bind with multiple ligands, offering a store and transporter for various endogenous and exogenous compounds. Huperzine A (HpzA) is a natural sesquiterpene alkaloid found in Huperzia serrata and used in various neurological conditions, including Alzheimer's disease (AD). This study elucidated the binding of HpzA with HSA using advanced computational approaches such as molecular docking and molecular dynamic (MD) simulation followed by fluorescence-based binding assays. The molecular docking result showed plausible interaction between HpzA and HSA. The MD simulation and principal component analysis (PCA) results supported the stable interactions of the protein-ligand complex. The fluorescence assay further validated the in silico study, revealing significant binding affinity between HpzA and HSA. This study advocated that HpzA acts as a latent HSA binding partner, which may be investigated further in AD therapy in experimental settings.Entities:
Keywords: Huperzine A; drug–protein interactions; fluorescence spectroscopy; human serum albumin; molecular dynamics simulation; neurodegenerative disorders
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Year: 2022 PMID: 35164061 PMCID: PMC8839580 DOI: 10.3390/molecules27030797
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1The binding of HpzA with HSA. Ribbon and surface representation of HSA protein showing various interactions and docking fit of HpzA (UniProt ID: P02768).
Figure 2Detailed interactions of HSA with HpzA as (A) 2D and (B) 3D plots.
Figure 3Dynamics performance of HSA. (A) RMSD plot of HSA and its docked complex with HpzA. (B) Residual fluctuation plot of HSA and its docked complex with HpzA.
Figure 4Structural compactness of HSA as a function of time. (A) Time evolution of the radius of gyration. (B) SASA plot of HSA as a function of time.
Figure 5Intramolecular hydrogen bonds during the simulation. (A) Time evolution and stability of hydrogen bonds formed intramolecular within HSA. (B) The probability of distribution of hydrogen bonding as PDF.
Figure 6Intermolecular hydrogen bonds during the simulation. (A) Time evolution of hydrogen bonds formed between HpzA and HSA. (B) The probability of distribution of hydrogen bonds.
Figure 7Principal component analysis. (A) Two-dimensional projections of HSA trajectories on eigenvector 1 and eigenvector 2. (B) Time evaluation of conformational projections of trajectories on eigenvector 1 and eigenvector 2.
Figure 8The Gibbs free energy landscapes of (A) free HSA and (B) HSA–HpzA obtained during 100 ns MD simulation.
Figure 9Fluorescence emission spectra of HSA in the absence and presence of varying HpzA concentrations (0–11 μM) at (A) 15 °C, (B) 20 °C, and (C) 25 °C.
Binding and thermodynamic parameters obtained for the HSA–HpzA complex from fluorescence quenching studies.
| Temperature |
| ∆ | ∆ | ∆ | |||
|---|---|---|---|---|---|---|---|
| 15 | 1.8 | 0.36 | 1.07 | −7.78 | −165.26 | −55.38 | −47.59 |
| 20 | 3.33 | 1.17 | 1.10 | −6.96 | −48.42 | ||
| 25 | 5.19 | 9.35 | 1.25 | −6.13 | −49.24 |
Figure 10(A) Modified Stern–Volmer plot of the HSA–HpzA complex at different temperatures. (B) van ‘t Hoff plot of the HSA–HpzA complex.