Literature DB >> 33105480

InstaDock: A single-click graphical user interface for molecular docking-based virtual high-throughput screening.

Taj Mohammad1, Yash Mathur2, Md Imtaiyaz Hassan3.   

Abstract

Exploring protein-ligand interactions is a subject of immense interest, as it provides deeper insights into molecular recognition, mechanism of interaction and subsequent functions. Predicting an accurate model for a protein-ligand interaction is a challenging task. Molecular docking is a computational method used for predicting the preferred orientation, binding conformations and the binding affinity of a ligand to a macromolecular target, especially protein. It has been applied in 'virtual high-throughput screening' of chemical libraries containing millions of compounds to find potential leads in drug design and discovery. Here, we have developed InstaDock, a free and open access Graphical User Interface (GUI) program that performs molecular docking and high-throughput virtual screening efficiently. InstaDock is a single-click GUI that uses QuickVina-W, a modified version of AutoDock Vina for docking calculations, made especially for the convenience of non-bioinformaticians and for people who are not experts in using computers. InstaDock facilitates onboard analysis of docking and visual results in just a single click. To sum up, InstaDock is the easiest and more interactive interface than ever existing GUIs for molecular docking and high-throughput virtual screening. InstaDock is freely available for academic and industrial research purposes via https://hassanlab.org/instadock.
© The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  AutoDock Vina; InstaDock; QuickVina-W; docking GUI; docking tool; drug discovery; protein–ligand interaction; virtual high-throughput screening; virtual screening

Year:  2021        PMID: 33105480     DOI: 10.1093/bib/bbaa279

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  20 in total

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Authors:  Anas Shamsi; Debarati DasGupta; Fahad A Alhumaydhi; Mohd Shahnawaz Khan; Suliman A Alsagaby; Waleed Al Abdulmonem; Md Imtaiyaz Hassan; Dharmendra Kumar Yadav
Journal:  RSC Med Chem       Date:  2022-04-20

2.  Investigating the Mechanism of Inhibition of Cyclin-Dependent Kinase 6 Inhibitory Potential by Selonsertib: Newer Insights Into Drug Repurposing.

Authors:  Mohammad Hassan Baig; Mohd Yousuf; Mohd Imran Khan; Imran Khan; Irfan Ahmad; Mohammad Y Alshahrani; Md Imtaiyaz Hassan; Jae-June Dong
Journal:  Front Oncol       Date:  2022-05-26       Impact factor: 5.738

3.  Cinnamomum zeylanicum Extract and its Bioactive Component Cinnamaldehyde Show Anti-Tumor Effects via Inhibition of Multiple Cellular Pathways.

Authors:  Sadhna Aggarwal; Kanchan Bhadana; Baldeep Singh; Meenakshi Rawat; Taj Mohammad; Lamya Ahmed Al-Keridis; Nawaf Alshammari; Md Imtaiyaz Hassan; Satya N Das
Journal:  Front Pharmacol       Date:  2022-06-02       Impact factor: 5.988

4.  Potential Mechanism of S. baicalensis on Lipid Metabolism Explored via Network Pharmacology and Untargeted Lipidomics.

Authors:  Ping-Yuan Ge; Yi-Yu Qi; Shu-Yue Qu; Xin Zhao; Sai-Jia Ni; Zeng-Ying Yao; Rui Guo; Nian-Yun Yang; Qi-Chun Zhang; Hua-Xu Zhu
Journal:  Drug Des Devel Ther       Date:  2021-05-04       Impact factor: 4.162

5.  Computational Identification of Druggable Bioactive Compounds from Catharanthus roseus and Avicennia marina against Colorectal Cancer by Targeting Thymidylate Synthase.

Authors:  Md Rashedul Islam; Md Abdul Awal; Ahmed Khames; Mohammad A S Abourehab; Abdus Samad; Walid M I Hassan; Rahat Alam; Osman I Osman; Suza Mohammad Nur; Mohammad Habibur Rahman Molla; Abdulrasheed O Abdulrahman; Sultana Rajia; Foysal Ahammad; Md Nazmul Hasan; Ishtiaq Qadri; Bonglee Kim
Journal:  Molecules       Date:  2022-03-24       Impact factor: 4.411

6.  Trehalose Restrains the Fibril Load towards α-Lactalbumin Aggregation and Halts Fibrillation in a Concentration-Dependent Manner.

Authors:  Sania Bashir; Ishfaq Ahmad Ahanger; Anas Shamsi; Mohamed F Alajmi; Afzal Hussain; Hani Choudhry; Faizan Ahmad; Md Imtaiyaz Hassan; Asimul Islam
Journal:  Biomolecules       Date:  2021-03-11

7.  Mechanistic Insight into Binding of Huperzine A with Human Serum Albumin: Computational and Spectroscopic Approaches.

Authors:  Anas Shamsi; Moyad Shahwan; Mohd Shahnawaz Khan; Fahad A Alhumaydhi; Suliman A Alsagaby; Waleed Al Abdulmonem; Bekhzod Abdullaev; Dharmendra Kumar Yadav
Journal:  Molecules       Date:  2022-01-25       Impact factor: 4.411

8.  Bioactive phytoconstituents as potent inhibitors of casein kinase-2: dual implications in cancer and COVID-19 therapeutics.

Authors:  Farah Anjum; Md Nayab Sulaimani; Alaa Shafie; Taj Mohammad; Ghulam Md Ashraf; Anwar L Bilgrami; Fahad A Alhumaydhi; Suliman A Alsagaby; Dharmendra Kumar Yadav; Md Imtaiyaz Hassan
Journal:  RSC Adv       Date:  2022-03-10       Impact factor: 3.361

9.  Elucidating the Interactions of Fluoxetine with Human Transferrin Employing Spectroscopic, Calorimetric, and In Silico Approaches: Implications of a Potent Alzheimer's Drug.

Authors:  Mohd Shahnawaz Khan; Moyad Shahwan; Anas Shamsi; Fahad A Alhumaydhi; Suliman A Alsagaby; Waleed Al Abdulmonem; Bekhzod Abdullaev; Dharmendra Kumar Yadav
Journal:  ACS Omega       Date:  2022-03-02

10.  Identification of Phytoconstituents as Potent Inhibitors of Casein Kinase-1 Alpha Using Virtual Screening and Molecular Dynamics Simulations.

Authors:  Alaa Shafie; Shama Khan; Taj Mohammad; Farah Anjum; Gulam Mustafa Hasan; Dharmendra Kumar Yadav; Md Imtaiyaz Hassan
Journal:  Pharmaceutics       Date:  2021-12-15       Impact factor: 6.321

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