| Literature DB >> 35163982 |
Mikhail V Vener1, Andrei V Churakov1, Alexander P Voronin2, Olga D Parashchuk3, Sergei V Artobolevskii4, Oleg A Alatortsev4, Denis E Makhrov4, Alexander G Medvedev1, Aleksander Filarowski5.
Abstract
Two new peroxosolvates of drug-like compounds were synthesized and studied by a combination of X-ray crystallographic, Raman spectroscopic methods, and periodic DFT computations. The enthalpies of H-bonds formed by hydrogen peroxide (H2O2) as a donor and an acceptor of protons were compared with the enthalpies of analogous H-bonds formed by water (H2O) in isomorphic (isostructural) hydrates. The enthalpies of H-bonds formed by H2O2 as a proton donor turned out to be higher than the values of the corresponding H-bonds formed by H2O. In the case of H2O2 as a proton acceptor in H-bonds, the ratio appeared reversed. The neutral O∙∙∙H-O/O∙∙∙H-N bonds formed by the lone electron pair of the oxygen atom of water were the strongest H-bonds in the considered crystals. In the paper, it was found out that the low-frequency Raman spectra of isomorphous crystalline hydrate and peroxosolvate of N-(5-Nitro-2-furfurylidene)-1-aminohydantoin are similar. As for the isostructural hydrate and peroxosolvate of the salt of protonated 2-amino-nicotinic acid and maleic acid monoanion, the Raman spectra are different.Entities:
Keywords: bifurcate hydrogen bonds; crystal packing; hydrogen bond enthalpy; low-frequency Raman spectroscopy; periodic DFT computations
Year: 2022 PMID: 35163982 PMCID: PMC8838768 DOI: 10.3390/molecules27030717
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Structures of salts of protonated 2-amino-nicotinic acid and maleic acid monoanion (a) and N-(5-Nitro-2-furfurylidene)-1-aminohydantoin (b).
Figure 1The fragments of the [2AmNic+Mle+H2O] [36] (a) and [2AmNic+Mle+H2O2] (b) structures. H-bonds are denoted by dotted lines.
Figure 2The fragments of the [NFA+H2O] [35] (a) and [NFA+H2O2] (b) structures. H-bonds are denoted by dotted lines.
Distances between the atoms involved in the formation of intermolecular H-bonds in [2AmNic+Mle+H2O], [2AmNic+Mle+H2O2], [NFA+H2O] and [NFA+H2O2]; R(O∙∙∙N), R(O∙∙∙O), and R(H∙∙∙O) obtained using periodic DFT computations (PBE-D3/6-31G**) and the ∆HHB values evaluated using Equation (1).
| Fragment 1 | ∆ | ||
|---|---|---|---|
| [2AmNic+Mle+H2O] (1:1:1) | |||
| O12…H21-N2 | 2.804 (2.816) | 1.777 (1.928) | 26.0 |
| O11…H11-N1 | 2.816 (2.816) | 1.770 (1.905) | 26.4 |
| O12…H31-O3 | 2.701 (2.717) | 1.707 (1.860) | 29.4 |
| O13…H32-O3 | 2.765 (2.771) | 1.783 (1.900) | 25.8 |
| O3…H1-O1 | 2.536 (2.567) | 1.484 (1.641) | 45.1 |
| [2AmNic+Mle+H2O2] (1:1:1) | |||
| O12…H21-N2 | 2.846 (2.831) | 1.810 (1.955) | 24.6 |
| O11…H11-N1 | 2.849 (2.735) | 1.805 (1.803) | 24.8 |
| O12…H31-O31 | 2.658 (2.636) | 1.648 (1.759) | 32.8 |
| O13…H32-O32 | 2.774 (2.698) | 1.841 (1.767) | 23.3 |
| O31…H1-O1 | 2.726 (2.646) | 1.738 (1.769) | 27.9 |
| [NFA+H2O] | |||
| N4-H4…O6 | 2.689 (2.763) | 1.653 (1.782) | 32.5 |
| O6-H7…O4 | 2.834 (2.961) | 1.938 (2.015) | 20.0 |
| O6-H8…O1 | 3.080 (3.148) | 2.338 (2.245) | 11.3 |
| O6-H8…O3 | 2.966 (3.172) | 2.100 (2.392) | 15.6 |
| [NFA+H2O2] | |||
| N4-H4…O6 | 2.807 (2.905) | 1.822 (2.098) | 24.1 |
| O6’-H7…O4 | 2.735 (2.737) | 1.786 (1.894) | 25.6 |
| O6-H8…O1 | 3.175 (3.128) | 2.496 (2.477) | 9.2 |
| O6-H8…O3 | 2.871 (2.907) | 1.935 (2.144) | 20.1 |
1 the atomic numbering is given in Figure 1 and Figure 2; 2 experimental values are given in parentheses.
Figure 3The experimental low-frequency Raman spectra of the [NFA+H2O] and [NFA+H2O2] complexes (a); the [2AmNic+Mle+H2O] and [2AmNic+Mle+H2O2] complexes (b).
Crystal data and refinement details of the [2AmNic+Mle+H2O2] and [NFA+H2O2] structures.
| [2AmNic+Mle+H2O2] | [NFA+H2O2] | |
|---|---|---|
| Empirical formula | C10H12N2O8 | C8H8N4O7 |
| 288.22 | 272.18 | |
| color, habit | colorless, prism | light-yellow, prism |
| crystal size (mm) | 0.25 × 0.20 × 0.15 | 0.25 × 0.15 × 0.10 |
| crystal system | monoclinic | orthorhombic |
| space group | ||
| 9.5451(4) | 13.0154(7) | |
| 11.7871(4) | 9.4659(7) | |
| 11.0780(4) | 17.9512(10) | |
| 105.089(1) | 90 | |
| 1203.40(8) | 2211.6(2) | |
|
| 4 | 8 |
| 1.591 | 1.635 | |
| 0.140 | 0.146 | |
| 600 | 1120 | |
| 2.51 to 29.00 | 2.27 to 28.00 | |
| refl collcd | 11941 | 19769 |
| indep reflns/ | 3189/0.0219 | 2671/0.0650 |
| reflns | 2742 | 1995 |
| No of param | 229 | 205 |
| GooF on | 1.047 | 1.025 |
| 0.0345 | 0.0371 | |
| 0.0954 | 0.0882 | |
| largest diff peak/hole (e·Å−3) | 0.368/−0.191 | 0.250/−0.244 |
Figure 4The experimental (black line) and calculated (PBE-D3—red sticks and B3LYP—blue sticks) low-frequency Raman spectra of the [NFA+H2O2] crystal (a). The height of the bars is proportional to the relative Raman intensity of corresponding transition. The schematic representation of the atom displacements of the two Raman intense vibrations (PBE-D3/6-31G**) at 30 cm−1 (b) and 80 cm−1 (c).
Figure 5The experimental (black line) and calculated (PBE-D3—red sticks and B3LYP—blue sticks) low-frequency Raman spectra of the [2AmNic+Mle+H2O2] crystal (a). The theoretical values of wavenumbers are scaled by 0.9. The height of the bars is proportional to the relative Raman intensity of the corresponding transition. The schematic representation of the atom displacements of the two Raman intense vibrations (PBE-D3/6-31G**) at 44 cm−1 (b) and 94 cm−1 (c).