Literature DB >> 35141230

Cancer and COVID-19 Susceptibility and Severity: A Two-Sample Mendelian Randomization and Bioinformatic Analysis.

Yiyin Zhang1, Qijiang Mao1, Yirun Li1, Jiaxi Cheng1, Qiming Xia1, Guoqiao Chen1, Peng Chen1, Shengxi Jin1, Duguang Li1, Cheng Zhong1, Jing Yang1, Xiaoxiao Fan1,2, Yuelong Liang1, Hui Lin1,3.   

Abstract

The clinical management of patients with COVID-19 and cancer is a Gordian knot that has been discussed widely but has not reached a consensus. We introduced two-sample Mendelian randomization to investigate the causal association between a genetic predisposition to cancers and COVID-19 susceptibility and severity. Moreover, we also explored the mutation landscape, expression pattern, and prognostic implications of genes involved with COVID-19 in distinct cancers. Among all of the cancer types we analyzed, only the genetic predisposition to lung adenocarcinoma was causally associated with increased COVID-19 severity (OR = 2.93, β = 1.074, se = 0.411, p = 0.009) with no obvious heterogeneity (Q = 17.29, p = 0.24) or symmetry of the funnel plot. In addition, the results of the pleiotropy test demonstrated that instrument SNPs were less likely to affect COVID-19 severity via approaches other than lung adenocarcinoma cancer susceptibility (p = 0.96). Leave-one-out analysis showed no outliers in instrument SNPs, whose elimination rendered alterations in statistical significance, which further supported the reliability of the MR results. Broad mutation and differential expression of these genes were also found in cancers, which may provide valuable information for developing new treatment modalities for patients with both cancer and COVID-19. For example, ERAP2, a risk factor for COVID-19-associated death, is upregulated in lung squamous cancer and negatively associated with patient prognosis. Hence, ERAP2-targeted treatment may simultaneously reduce COVID-19 disease severity and restrain cancer progression. Our results highlighted the importance of strengthening medical surveillance for COVID-19 deterioration in patients with lung adenocarcinoma by showing their causal genetic association. For these patients, a delay in anticancer treatment, such as chemotherapy and surgery, should be considered.
Copyright © 2022 Zhang, Mao, Li, Cheng, Xia, Chen, Chen, Jin, Li, Zhong, Yang, Fan, Liang and Lin.

Entities:  

Keywords:  COVID-19; ERAP2; GWAS; Mendelian randomization; cancer; lung adenocarcinoma

Year:  2022        PMID: 35141230      PMCID: PMC8818950          DOI: 10.3389/fcell.2021.759257

Source DB:  PubMed          Journal:  Front Cell Dev Biol        ISSN: 2296-634X


  23 in total

1.  Web Site and R Package for Computing E-values.

Authors:  Maya B Mathur; Peng Ding; Corinne A Riddell; Tyler J VanderWeele
Journal:  Epidemiology       Date:  2018-09       Impact factor: 4.822

2.  Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.

Authors:  Jianjiong Gao; Bülent Arman Aksoy; Ugur Dogrusoz; Gideon Dresdner; Benjamin Gross; S Onur Sumer; Yichao Sun; Anders Jacobsen; Rileen Sinha; Erik Larsson; Ethan Cerami; Chris Sander; Nikolaus Schultz
Journal:  Sci Signal       Date:  2013-04-02       Impact factor: 8.192

Review 3.  Mendelian Randomization as an Approach to Assess Causality Using Observational Data.

Authors:  Peggy Sekula; Fabiola Del Greco M; Cristian Pattaro; Anna Köttgen
Journal:  J Am Soc Nephrol       Date:  2016-08-02       Impact factor: 10.121

Review 4.  Mendelian Randomization.

Authors:  Connor A Emdin; Amit V Khera; Sekar Kathiresan
Journal:  JAMA       Date:  2017-11-21       Impact factor: 56.272

5.  The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.

Authors:  Ethan Cerami; Jianjiong Gao; Ugur Dogrusoz; Benjamin E Gross; Selcuk Onur Sumer; Bülent Arman Aksoy; Anders Jacobsen; Caitlin J Byrne; Michael L Heuer; Erik Larsson; Yevgeniy Antipin; Boris Reva; Arthur P Goldberg; Chris Sander; Nikolaus Schultz
Journal:  Cancer Discov       Date:  2012-05       Impact factor: 39.397

6.  Use of E-values for addressing confounding in observational studies-an empirical assessment of the literature.

Authors:  Manuel R Blum; Yuan Jin Tan; John P A Ioannidis
Journal:  Int J Epidemiol       Date:  2020-10-01       Impact factor: 7.196

7.  A framework for the investigation of pleiotropy in two-sample summary data Mendelian randomization.

Authors:  Jack Bowden; Fabiola Del Greco M; Cosetta Minelli; George Davey Smith; Nuala Sheehan; John Thompson
Journal:  Stat Med       Date:  2017-01-23       Impact factor: 2.373

8.  Assessing the suitability of summary data for two-sample Mendelian randomization analyses using MR-Egger regression: the role of the I2 statistic.

Authors:  Jack Bowden; Fabiola Del Greco M; Cosetta Minelli; George Davey Smith; Nuala A Sheehan; John R Thompson
Journal:  Int J Epidemiol       Date:  2016-12-01       Impact factor: 7.196

9.  Case Fatality Rate of Cancer Patients with COVID-19 in a New York Hospital System.

Authors:  Vikas Mehta; Sanjay Goel; Rafi Kabarriti; Balazs Halmos; Amit Verma; Daniel Cole; Mendel Goldfinger; Ana Acuna-Villaorduna; Kith Pradhan; Raja Thota; Stan Reissman; Joseph A Sparano; Benjamin A Gartrell; Richard V Smith; Nitin Ohri; Madhur Garg; Andrew D Racine; Shalom Kalnicki; Roman Perez-Soler
Journal:  Cancer Discov       Date:  2020-05-01       Impact factor: 38.272

Review 10.  Battling COVID-19: critical care and peri-operative healthcare resource management strategies in a tertiary academic medical centre in Singapore.

Authors:  C C M Lee; S Thampi; B Lewin; T J D Lim; B Rippin; W H Wong; R V Agrawal
Journal:  Anaesthesia       Date:  2020-05-03       Impact factor: 12.893

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