| Literature DB >> 35140817 |
Xuejiao Liu1, Jiao Zeng1, Xiaoli Zhang1, Jiapeng Gu1, Fan Zhang1, Yongkai Han1, Ping Zhang1, Wenqiang Li1,2, Renjun Gu1,2.
Abstract
OBJECTIVE: The purpose of this study was to analyze the relationship between cadherin gene single-nucleotide polymorphisms (SNPs) and the risk of delayed encephalopathy after acute carbon monoxide poisoning (DEACMP).Entities:
Mesh:
Substances:
Year: 2022 PMID: 35140817 PMCID: PMC8818434 DOI: 10.1155/2022/3155703
Source DB: PubMed Journal: Behav Neurol ISSN: 0953-4180 Impact factor: 3.342
Physical locations of the 4 cadherin gene SNPs.
| Variant | Chrom | Position | MAF |
|---|---|---|---|
| rs1899646 (CDH2) C/G | 18 | 27933109 | 0.155 (C) |
| rs1944294 (CDH2) A/T | 18 | 28036487 | 0.206 (T) |
| rs2513796 (CDH17) G/A | 8 | 94130191 | 0.215 (A) |
| rs6028103 (CDH4) C/T | 20 | 61311096 | 0.304 (C) |
Demographic variables of DEACMP and ACMP patients genotyped for the 4 SNPs (rs1899646, rs1944294, rs2513796, and rs6028103 polymorphisms).
| Characteristic | rs1899646 (CDH2) DEACMP | ACMP | Statistics |
| rs1944294 (CDH2) DEACMP | ACMP | Statistics |
| rs2513796 (CDH17) DEACMP | ACMP | Statistics |
| rs6028103 (CDH4) DEACMP | ACMP | Statistics |
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| Age (y) ± SD (range) | 64.80 ± 11.67 | 65.13 ± 15.95 |
| 0.718 | 64.89 ± 11.67 | 65.13 ± 15.93 |
| 0.794 | 64.82 ± 11.66 | 65.09 ± 15.93 |
| 0.765 | 64.92 ± 11.69 | 65.11 ± 15.92 |
| 0.831 |
| Total | 413 | 751 | 413 | 754 | 412 | 750 | 414 | 754 | ||||||||
| Male | 242 | 434 |
| 0.790 | 242 | 435 |
| 0.765 | 242 | 432 |
| 0.707 | 242 | 435 |
| 0.801 |
| Female | 171 | 317 | 171 | 319 | 170 | 318 | 172 | 319 | ||||||||
| Education level | ||||||||||||||||
| Uneducation | 130 | 200 |
| 0.188 | 130 | 200 |
| 0.181 | 130 | 198 |
| 0.155 | 130 | 200 |
| 0.176 |
| Primary school | 141 | 264 | 48 | 140 | 265 | 23 | 140 | 264 | 28 | 142 | 265 | 80 | ||||
| Middle school | 142 | 287 | 143 | 289 | 142 | 288 | 142 | 289 |
Results of the Hardy-Weinberg equilibrium test for genotype distributions of cadherin polymorphisms.
| SNP | Genotypes | Risk allele | Risk minor allele frequency DEACMP/ACMP | Actual value | Test value |
|---|---|---|---|---|---|
| rs1899646 (CDH2) | CC | C | 21/30 |
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| CG | 0.224/0.199 | 143/239 | |||
| GG | 249/482 | ||||
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| rs1944294 (CDH2) | AA | T | 217/344 |
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| AT | 0.271/0.316 | 168/343 | |||
| TT | 28/67 | ||||
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| rs2513796 (CDH17) | GG | A | 214/337 |
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| GA | 0.288/0.320 | 159/346 | |||
| AA | 39/67 | ||||
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| rs6028103 (CDH4) | CC | 57/99 | |||
| CT | C | 0.384/0.375 | 204/368 |
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| TT | 153/287 | ||||
Association analysis of cadherin polymorphisms under different genetic models and DEACMP risk.
| SNPs | Genetic models | DEACMP | ACMP |
| OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs1899646 (CDH2) | Allele | (G/C) | 641/185 | 1203/299 | 0.157 | 1.161 (0.944-1.428) |
| Codominant | (GG/CG/CC) | 249/143/21 | 482/239/30 | 0.264/0.303 | 1.158 (0.895-1.498)/1.355 (0.760-2.416) | |
| Dominant | (GG/CG+CC) | 249/164 | 482/269 | 0.189 | 1.180 (0.922-1.511) | |
| Recessive | (GG+CG/CC) | 392/21 | 721/30 | 0.386 | 1.287 (0.727-2.279) | |
| Overdominant | (GG+CC/CG) | 270/143 | 512/239 | 0.330 | 1.135 (0.880-1.463) | |
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| rs1944294 (CDH2) | Allele | (A/T) | 602/224 | 1031/477 | 0.023∗ | 0.804 (0.666-0.971) |
| Codominant | (AA/AT/TT) | 217/168/28 | 344/343/67 | 0.048∗/0.088 | 0.776 (0.604-0.998)/0.662 (0.413-1.063) | |
| Dominant | (AA/AT+TT) | 217/196 | 344/410 | 0.024∗ | 0.758 (0.596-0.964) | |
| Recessive | (AA+AT/TT) | 385/28 | 687/67 | 0.210 | 0.746 (0.472-1.179) | |
| Overdominant | (AA+TT/AT) | 245/168 | 411/343 | 0.113 | 0.822 (0.644-1.048) | |
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| rs2513796 (CDH17) | Allele | (G/A) | 587/237 | 1020/480 | 0.106 | 0.858 (0.712-1.033) |
| Codominant | (GG/GA/AA) | 214/159/39 | 337/346/67 | 0.013∗/0.692 | 0.724 (0.561-0.933)/0.917 (0.596-1.410) | |
| Dominant | (GG/GA+AA) | 214/198 | 337/413 | 0.022∗ | 0.755 (0.593-0.961) | |
| Recessive | (GG+GA/AA) | 373/39 | 683/67 | 0.763 | 1.066 (0.704-1.613) | |
| Overdominant | (GG+AA/GA) | 253/159 | 404/346 | 0.013∗ | 0.734 (0.574-0.937) | |
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| rs6028103 (CDH4) | Allele | (T/C) | 510/318 | 942/566 | 0.677 | 1.038 (0.872-1.236) |
| Codominant | (TT/CT/CC) | 153/204/57 | 287/368/99 | 0.769/0.692 | 1.040 (0.802-1.349)/1.080 (0.738-1.580) | |
| Dominant | (TT/CT+CC) | 153/261 | 287/467 | 0.709 | 1.048 (0.818-1.343) | |
| Recessive | (TT+CT/CC) | 357/57 | 655/99 | 0.759 | 1.056 (0.744-1.500) | |
| Overdominant | (TT+CC/CT) | 210/204 | 386/368 | 0.878 | 1.019 (0.802-1.295) | |