| Literature DB >> 33123300 |
Linlin Xu1, Xuejiao Liu1, Jing Zhao1, Jiao Zeng1, Jiapeng Gu1, Xiaoli Zhang1, Fan Zhang1, Yongkai Han1, Wenqiang Li1,2, Ping Zhang1, Renjun Gu1,2.
Abstract
OBJECTIVE: The aim of this study is to explore the relationship between neuron-specific enolase (NSE) gene polymorphism and delayed encephalopathy after acute carbon monoxide poisoning (DEACMP) and provide a theoretical basis for DEACMP pathogenesis, diagnosis, and prognosis.Entities:
Mesh:
Substances:
Year: 2020 PMID: 33123300 PMCID: PMC7584970 DOI: 10.1155/2020/8819210
Source DB: PubMed Journal: Behav Neurol ISSN: 0953-4180 Impact factor: 3.342
Physical locations of the 6 NSE gene SNPs.
| Variant | Chrom | Position | MAF |
|---|---|---|---|
| (rs2071074) | 12 | 6916599 | 0.125(C) |
| (rs2071417) | 12 | 6917143 | 0.125(C) |
| (rs2071419) | 12 | 6917768 | 0.346(C) |
| (rs11064464) | 12 | 6919230 | 0.105(C) |
| (rs11064465) | 12 | 6919445 | 0.105(A) |
| (rs3213434) | 12 | 6919954 | 0.309(T) |
Demographic variables of DEACMP and ACMP patients genotyped for the 6 SNPs (rs2071074, rs2071417, rs2071419, rs11064464, rs11064465, and rs3213434 polymorphisms).
| Characteristics | Number of samples | Age | Sex | Education level | |||
|---|---|---|---|---|---|---|---|
| Male | Female | Uneducated | Primary school | Middle school | |||
| rs2071074 | |||||||
| DEACMP |
| 64.80 ± 11.69 | 244 | 172 | 130 | 142 | 144 |
| ACMP |
| 63.91 ± 12.19 | 413 | 344 | 192 | 257 | 298 |
| Statistics |
|
|
| ||||
| | 0.227 | 0.176 | 0.085 | ||||
| rs2071417 | |||||||
| DEACMP |
| 64.84 ± 11.73 | 241 | 172 | 129 | 141 | 143 |
| ACMP |
| 63.87 ± 12.17 | 411 | 334 | 192 | 257 | 296 |
| Statistics |
|
|
| ||||
| | 0.189 | 0.295 | 0.095 | ||||
| rs2071419 | |||||||
| DEACMP |
| 64.81 ± 11.70 | 243 | 172 | 130 | 142 | 143 |
| ACMP |
| 63.71 ± 12.13 | 408 | 329 | 188 | 253 | 296 |
| Statistics |
|
|
| ||||
| | 0.134 | 0.294 | 0.063 | ||||
| rs11064464 | |||||||
| DEACMP |
| 64.83 ± 11.72 | 241 | 173 | 130 | 140 | 144 |
| ACMP |
| 63.85 ± 12.17 | 412 | 332 | 193 | 255 | 296 |
| Statistics |
|
|
| ||||
| | 0.184 | 0.351 | 0.100 | ||||
| rs11064465 | |||||||
| DEACMP |
| 64.81 ± 11.70 | 243 | 172 | 130 | 142 | 143 |
| ACMP |
| 63.94 ± 12.20 | 414 | 334 | 193 | 257 | 298 |
| Statistics |
|
|
| ||||
| | 0.236 | 0.291 | 0.091 | ||||
| rs3213434 | |||||||
| DEACMP |
| 64.80 ± 11.69 | 244 | 172 | 130 | 142 | 144 |
| ACMP |
| 63.98 ± 12.23 | 415 | 334 | 193 | 257 | 299 |
| Statistics |
|
|
| ||||
| | 0.262 | 0.284 | 0.087 | ||||
Results of Hardy-Weinberg equilibrium test for genotype distributions of NSE.
| SNPs | Genotypes | Risk allele | Risk allele frequency ACMP/DEACMP | Actual value | Test value |
|
|---|---|---|---|---|---|---|
| rs2071074 | CC | C | 0.250/0.222 | 49/25 |
|
|
| rs2071417 | CC | C | 0.251/0.222 | 47/24 |
|
|
| rs2071419 | CC | C | 0.233/0.188 | 43/18 |
|
|
| rs11064464 | CC | C | 0.193/0.175 | 29/13 |
|
|
| rs11064465 | AA | A | 0.192/0.175 | 25/13 |
|
|
| rs3213434 | CC | T | 0.232/0.183 | 442/282 |
|
|
Correlation analysis of NSE polymorphisms under different genetic models and DEACMP risk.
| SNPs | Genetic models | DEACMP | ACMP | Pobs | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs2071074 | Allele | G/C | 647/185 | 1120/374 | 0.130 | 0.856 (0.700, 1.047) |
| Codominant | GG/GC/CC | 256/135/25 | 422/276/49 | 0.102/0.503 | 0.806 (0.623, 1.043)/0.841 (0.507, 1.395) | |
| Dominant | GG/GC+CC | 256/160 | 422/325 | 0.095 | 0.812 (0.635, 1.037) | |
| Recessive | GG+GC/CC | 391/25 | 698/49 | 0.713 | 0.911 (0.554, 1.498) | |
| Overdominant | GG+CC/GC | 281/135 | 471/276 | 0.124 | 0.820 (0.636, 1.056) | |
| rs2071417 | Allele | G/C | 643/183 | 1103/369 | 0.117 | 0.851 (0.695, 1.041) |
| Codominant | GG/GC/CC | 254/135/24 | 423/275/47 | 0.126/0.538 | 0.818 (0.632, 1.058)/0.850 (0.508, 1.424) | |
| Dominant | GG/GC+CC | 254/159 | 423/322 | 0.118 | 0.822 (0.643, 1.051) | |
| Recessive | GG+GC/CC | 389/24 | 698/47 | 0.735 | 0.916 (0.552, 1.521) | |
| Overdominant | GG+CC/GC | 278/135 | 470/275 | 0.150 | 0.830 (0.644, 1.070) | |
| rs2071419 | Allele | T/C | 674/156 | 1130/344 | 0.011 | 0.760 (0.615, 0.940) |
| Codominant | TT/TC/CC | 277/120/18 | 436/258/43 | 0.020/0.152 | 0.732 (0.562, 0.953)/0.659 (0.372, 1.166) | |
| Dominant | TT/TC+CC | 277/138 | 436/301 | 0.011 | 0.722 (0.561, 0.928) | |
| Recessive | TT+TC/CC | 397/18 | 694/43 | 0.278 | 0.732 (0.416, 1.286) | |
| Overdominant | TT+CC/TC | 295/120 | 479/258 | 0.035 | 0.755 (0.582, 0.980) | |
| rs11064464 | Allele | T/C | 683/145 | 1201/287 | 0.293 | 0.888 (0.712, 1.108) |
| Codominant | TT/TC/CC | 282/119/13 | 486/229/29 | 0.416/0.451 | 0.896 (0.687, 1.168)/0.773 (0.395, 1.510) | |
| Dominant | TT/TC+CC | 282/132 | 486/258 | 0.335 | 0.882 (0.683, 1.139) | |
| Recessive | TT+TC/CC | 401/13 | 715/29 | 0.509 | 0.799 (0.411, 1.555) | |
| Overdominant | TT+CC/TC | 295/119 | 515/229 | 0.469 | 0.907 (0.697, 1.181) | |
| rs11064465 | Allele | T/A | 685/145 | 1209/287 | 0.309 | 0.892 (0.715, 1.112) |
| Codominant | TT/TA/AA | 283/119/13 | 486/237/25 | 0.272/0.746 | 0.862 (0.662, 1.123)/0.893 (0.450, 1.773) | |
| Dominant | TT/TA+AA | 283/132 | 486/262 | 0.267 | 0.865 (0.670, 1.117) | |
| Recessive | TT+TA/AA | 402/13 | 723/25 | 0.847 | 0.935 (0.473, 1.848) | |
| Overdominant | TT+AA/TA | 296/119 | 511/237 | 0.286 | 0.867 (0.667, 1.127) | |
| rs3213434 | Allele | C/T | 680/152 | 1151/347 | 0.006 | 0.741 (0.599, 0.917) |
| Codominant | CC/CT/TT | 282/116/18 | 442/267/40 | 0.004/0.235 | 0.681 (0.523, 0.887)/0.705 (0.396, 1.255) | |
| Dominant | CC/CT+TT | 282/134 | 442/307 | 0.003 | 0.684 (0.532, 0.880) | |
| Recessive | CC+CT/TT | 398/18 | 709/40 | 0.447 | 0.802 (0.453, 1.417) | |
| Overdominant | CC+TT/TC | 300/116 | 482/267 | 0.007 | 0.698 (0.538, 0.906) |
Figure 1Haplotype block structure of ACMP and DEACMP patients. The index association SNP is represented as a diamond. The color of the remaining SNPs (circles) represents LD, and the indexed SNPs are based on the paired r2 values in our data.
Haplotypes of ACMP and DEACMP.
| Haplotype | Freq. | Case, control ratio counts | Case, control frequencies | Chi-square |
|
|---|---|---|---|---|---|
| GGTTTC | 0.567 | 469.4 : 306.6, 1025.4 : 836.6 | 0.605, 0551 | 6.563 | 0.010 |
| GGCTTT | 0.2 | 147.8 : 628.2, 378.7 : 1483.3 | 0.191, 0.203 | 0.565 | 0.452 |
| CCTCAC | 0.161 | 110.5 : 665.5, 313.3 : 1548.7 | 0.142, 0.168 | 2.726 | 0.099 |
| CCTTTC | 0.054 | 31.1 : 744.9, 111.2 : 1750.8 | 0.040, 0.060 | 4.151 | 0.042 |