| Literature DB >> 35132844 |
Hae-Sun Chung1, Jeong Su Park2, Bo-Moon Shin3, Hyeon Mi Yoo4, Heejung Kim5, Jihyun Cho6, Chae Hoon Lee7, Nam Hee Ryoo8, Jae-Seok Kim9, Jae-Woo Chung10, Ki Ho Hong11, You Sun Kim12, Young-Seok Cho13.
Abstract
BACKGROUND: The interest in Clostridioides difficile infection (CDI) has increased, and the choice of assays became wider since the first national survey in Korea on CDI diagnosis in 2015. We conducted a survey of the domestic CDI assays with more varied questions to understand the current situation in Korea.Entities:
Keywords: Clostridioides difficile Infection; Culture; Glutamate Dehydrogenase; Laboratory Diagnosis; Nucleic Acid Amplification Test; Survey; Toxin AB Enzyme Immunoassay
Mesh:
Year: 2022 PMID: 35132844 PMCID: PMC8822111 DOI: 10.3346/jkms.2022.37.e38
Source DB: PubMed Journal: J Korean Med Sci ISSN: 1011-8934 Impact factor: 2.153
The contents of questions on the current status of CDI assays and details on implementation and perceptions
| Contents of questions | |
|---|---|
| Hospital general information | |
| Location | |
| Type (tertiary hospital, general hospital, commercial laboratory, etc.) | |
| Number of beds | |
| Current status of CDI assays | |
| CDI assay implementation status and reasons for not performing CDI assays | |
| Characteristics of the patients referred for CDI assays | |
| Status of CDI assays for pediatric patients | |
| Sample rejection criteria | |
| CDI diagnostic test methods | |
| Assay types for CDI (toxin AB EIA, NAAT, | |
| How to conduct multiple test methods (simultaneously, sequentially, other) | |
| Kits to use | |
| Number of specimens | |
| Turnaround time | |
| The perception of the sensitivity and specificity of each CDI assay | |
| Algorithm and stand-alone tests | |
| Usefulness and sequence of algorithm tests | |
| Usefulness of NAAT as a stand-alone test | |
| CDI surveillance for infection control | |
| Status of surveillance on CDI | |
| Criteria for initiation and release of quarantine | |
CDI = Clostridioides difficile infection, EIA = enzyme immunoassay, NAAT = nucleic acid amplification test, GDH = glutamate dehydrogenase, CCNA = cell cytotoxicity neutralization assay.
Combinations of assay types for diagnosis of Clostridioides difficile infection according to hospital size
| Assay type | Hospital beds | Total | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Toxin AB EIA | NAAT | Culture | GDH | < 300 | 300–500 | 500–1,000 | > 1,000 | No response | ||
| + | + | + | + | 1 | 1 | 2 (2.2) | ||||
| + | + | + | 1 | 12 | 7 | 20 (22.5) | ||||
| + | + | + | 1 | 1 | 1 | 1 | 4 (4.5) | |||
| + | + | 1 | 13 | 1 | 15 (16.9) | |||||
| + | + | + | 1 | 1 | 2 (2.2) | |||||
| + | + | 4 | 1 | 5 (5.6) | ||||||
| + | + | 5 | 4 | 2 | 11 (12.4) | |||||
| + | 3 | 3 | 9 | 1 | 16 (18.0) | |||||
| + | + | + | 1 | 1 (1.1) | ||||||
| + | + | 1 | 1 | 2 | 4 (4.5) | |||||
| + | + | 1 | 1 (1.1) | |||||||
| + | 5 | 5 (5.6) | ||||||||
| + | 1 | 1 (1.1) | ||||||||
| + | 1 | 1 | 2 (2.2) | |||||||
| Total | 75 (84.3) | 52 (58.4) | 35 (36.0) | 23 (25.8) | 11 | 12 | 51 | 14 | 1 | 89 |
Values are presented as number (%).
EIA = enzyme immunoassay, NAAT = nucleic acid amplification test, GDH = glutamate dehydrogenase.
Clostridioides difficile assay methods and the numbers of laboratories that participated in the survey
| Assay type | Name | Manufacturer | Target | Method | Lab (N) |
|---|---|---|---|---|---|
| Toxin AB EIA | VIDAS CD AB | bioMérieux | Toxin A and B | Automated EIA | 39 |
| Ridascreen toxin AB | Biopharm | Toxin A and B | Well type EIA | 10 | |
| TechLab, Inc. | Toxin A and B | Well type EIA | 6 | ||
| C. DIFF QUIK CHEK COMPLETE | TechLab, Inc. | Toxin A and B | Immunochromatography | 19 | |
| Liaison | DiaSorin | Toxin A and B | Automated EIA | 2 | |
| Sum | 74a | ||||
| NAAT | Xpert | Cepheid | Real-time PCR | 36 | |
| AdvanSure CD | LG Chem. | Real-time PCR | 7 | ||
| BD Max Cdiff | BD | Real-time PCR | 5 | ||
| Illumigene | Meridian | LAMP | 1 | ||
| Seeplex Diarrhea ACE Detection | Seegene | Multiplex PCR | 2 | ||
| GENEDIA CD detection kit | Green cross MS | Multiplex PCR | 2 | ||
| Sum | 52b | ||||
| Culture | ChromeID | bioMérieux | 28 | ||
| Others | 5 | ||||
| Home-made | 1 | ||||
| Sum | 34 | ||||
| GDH | VIDAS GDH | bioMérieux | GDH | Automated EIA | 5 |
| C. DIFF QUIK CHEK COMPLETE | TechLab, Inc. | GDH | Immunochromatography | 18 | |
| Sum | 23 |
EIA = enzyme immunoassay, NAAT = nucleic acid amplification test, GDH = glutamate dehydrogenase, PCR = polymerase chain reaction, LAMP = loop-mediated isothermal amplification.
aTwo laboratories used two toxin AB EIA methods (VIDAS CD AB and Ridascreen toxin AB, C. difficile TOX A/B II and C. diff Quik); bOne laboratory used two NAAT methods (Xpert C.difficile and AdvanSure CD).
Numbers of specimens examined for CDI diagnosis according to assay types and hospital size per month in 2018
| Size of hospital, No. of beds | Toxin AB EIA | NAAT | Culture | GDH | ||||
|---|---|---|---|---|---|---|---|---|
| Hospitals | Specimens | Hospitals | Specimens | Hospitals | Specimens | Hospitals | Specimens | |
| < 300 | 8 | 251 (33–900) | 4 | 75 (33–303) | ||||
| 300–500 | 10 | 638 (193–1,920) | 3 | 200 (100–1,500) | 2 | 516 (32–1,000) | 7 | 600 (193–1,100) |
| < 500–1,000 | 40 | 1,750 (148–6,000) | 30 | 726 (4–3,625) | 17 | 1,200 (10–3,000) | 3 | 1,970 (692–6,000) |
| > 1,000 | 11 | 3,000 (1,996–8,000) | 13 | 1,996 (10–7,000) | 12 | 2,900 (339–7,000) | 2 | 2,253 (2,202–2,304) |
| Total | 69 | 1,582 (33–8,000) | 46 | 848 (4–7,000) | 31 | 1,500 (10–7,000) | 16 | 646 (33–6,000) |
Values are presented as median (interquartile range) or number.
CDI = Clostridioides difficile infection, EIA = enzyme immunoassay, NAAT = nucleic acid amplification test, GDH = glutamate dehydrogenase.
Turnaround time for Clostridioides difficile assays of laboratories that participated in the survey
| TAT (hr) | Toxin AB EIA | NAAT | GDH | TAT (day) | Culture |
|---|---|---|---|---|---|
| ≤ 1 | 6 (9.2) | 3 (7.3) | 3 (18.8) | ≤ 1 | 1 (4.0) |
| 1–2 | 9 (13.8) | 6 (14.6) | 2 (12.5) | 1–2 | 4 (16.0) |
| 2–4 | 9 (13.8) | 7 (17.1) | 3 (18.8) | 2–3 | 7 (28.0) |
| 4–8 | 11 (16.9) | 8 (19.5) | 2 (12.5) | 3–4 | 5 (20.0) |
| 8–24 | 16 (24.6) | 10 (24.4) | 4 (25.0) | 4–6 | 6 (24.0) |
| 24–48 | 13 (20.0) | 4 (9.8) | 1 (6.3) | > 6 | 2 (8.0) |
| > 48 | 1 (1.5) | 3 (7.3) | 1 (6.3) | ||
| Total | 65 | 41 | 16 | 25 |
Values are presented as number (%).
TAT = turnaround time, EIA = enzyme immunoassay, NAAT = nucleic acid amplification test, GDH = glutamate dehydrogenase.
Fig. 1The perception of the sensitivity and specificity of each Clostridioides difficile assays experienced by the laboratory medicine specialists.
EIA = enzyme immunoassay, NAAT = nucleic acid amplification test, GDH = glutamate dehydrogenase.