Literature DB >> 35130297

Using eDNA techniques to find the endangered big-headed turtle (Platysternon megacephalum).

Ivan P Y Lam1, Yik-Hei Sung1, Jonathan J Fong1.   

Abstract

We evaluate the efficacy of environmental DNA (eDNA) techniques to locate wild populations and estimate the population size of the endangered big-headed turtle (Platysternon megacephalum) in Hong Kong. The results from this study are important for identifying priority sites for protection and further research. Additionally, we assess the impact of two environmental variables (temperature and pH) on eDNA quantity. We surveyed 34 streams for three years, sampling four times each year. Four new populations were first identified with eDNA analysis, and then verified by field surveys. Our multi-year survey highlights that eDNA detection can be inconsistent over time, even in streams with known populations. There was no significant relationship between eDNA quantity and the environmental variables tested. Lastly, our results suggest that eDNA methods remain promising to estimate population size, since number of positive detections were positively correlated with population size in streams with known populations. We conclude that eDNA methods are powerful, but care must be taken when interpreting field results as they are affected by species ecology and environmental conditions.

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Year:  2022        PMID: 35130297      PMCID: PMC8820637          DOI: 10.1371/journal.pone.0262015

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  36 in total

1.  Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding.

Authors:  Alice Valentini; Pierre Taberlet; Claude Miaud; Raphaël Civade; Jelger Herder; Philip Francis Thomsen; Eva Bellemain; Aurélien Besnard; Eric Coissac; Frédéric Boyer; Coline Gaboriaud; Pauline Jean; Nicolas Poulet; Nicolas Roset; Gordon H Copp; Philippe Geniez; Didier Pont; Christine Argillier; Jean-Marc Baudoin; Tiphaine Peroux; Alain J Crivelli; Anthony Olivier; Manon Acqueberge; Matthieu Le Brun; Peter R Møller; Eske Willerslev; Tony Dejean
Journal:  Mol Ecol       Date:  2016-01-18       Impact factor: 6.185

2.  Factors influencing detection of eDNA from a stream-dwelling amphibian.

Authors:  David S Pilliod; Caren S Goldberg; Robert S Arkle; Lisette P Waits
Journal:  Mol Ecol Resour       Date:  2013-09-06       Impact factor: 7.090

3.  Species detection using environmental DNA from water samples.

Authors:  Gentile Francesco Ficetola; Claude Miaud; François Pompanon; Pierre Taberlet
Journal:  Biol Lett       Date:  2008-08-23       Impact factor: 3.703

4.  Fishing in the Water: Effect of Sampled Water Volume on Environmental DNA-Based Detection of Macroinvertebrates.

Authors:  Elvira Mächler; Kristy Deiner; Fabienne Spahn; Florian Altermatt
Journal:  Environ Sci Technol       Date:  2015-11-23       Impact factor: 9.028

5.  Molecular detection of vertebrates in stream water: a demonstration using Rocky Mountain tailed frogs and Idaho giant salamanders.

Authors:  Caren S Goldberg; David S Pilliod; Robert S Arkle; Lisette P Waits
Journal:  PLoS One       Date:  2011-07-26       Impact factor: 3.240

6.  The release rate of environmental DNA from juvenile and adult fish.

Authors:  Atsushi Maruyama; Keisuke Nakamura; Hiroki Yamanaka; Michio Kondoh; Toshifumi Minamoto
Journal:  PLoS One       Date:  2014-12-05       Impact factor: 3.240

7.  Environmental DNA reflects spatial and temporal jellyfish distribution.

Authors:  Toshifumi Minamoto; Miho Fukuda; Koki R Katsuhara; Ayaka Fujiwara; Shunsuke Hidaka; Satoshi Yamamoto; Kohji Takahashi; Reiji Masuda
Journal:  PLoS One       Date:  2017-02-28       Impact factor: 3.240

8.  Persistence of environmental DNA in marine systems.

Authors:  Rupert A Collins; Owen S Wangensteen; Eoin J O'Gorman; Stefano Mariani; David W Sims; Martin J Genner
Journal:  Commun Biol       Date:  2018-11-05

9.  Transport distance of invertebrate environmental DNA in a natural river.

Authors:  Kristy Deiner; Florian Altermatt
Journal:  PLoS One       Date:  2014-02-11       Impact factor: 3.240

10.  Evaluating the effects of laboratory protocols on eDNA detection probability for an endangered freshwater fish.

Authors:  Maxine P Piggott
Journal:  Ecol Evol       Date:  2016-03-17       Impact factor: 2.912

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  1 in total

Review 1.  A review of applications of environmental DNA for reptile conservation and management.

Authors:  Bethany Nordstrom; Nicola Mitchell; Margaret Byrne; Simon Jarman
Journal:  Ecol Evol       Date:  2022-06-05       Impact factor: 3.167

  1 in total

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