| Literature DB >> 35096725 |
Manaf Alqahtani1,2,3, Abdulkarim Abdulrahman1,4, Fathi Mustafa1,2, Abdulla I Alawadhi1,3, Batool Alalawi5, Saad I Mallah2.
Abstract
INTRODUCTION: The best way to mitigate an outbreak besides mass vaccination is via early detection and isolation of infected cases. As such, a rapid, cost-effective test for the early detection of COVID-19 is required.Entities:
Keywords: COVID-19; RT-PCR; SARS-CoV-2 (2019-nCoV); nasal swab; nasopharyngeal swabs; rapid antigen detection test; viral diagnostic
Mesh:
Year: 2022 PMID: 35096725 PMCID: PMC8795669 DOI: 10.3389/fpubh.2021.728969
Source DB: PubMed Journal: Front Public Health ISSN: 2296-2565
Demographics and clinical features of studied sample.
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| Age in years–Mean ± SD | 4,183 | 30.9 ± 14.5 |
| Male–no. (%) | 4,183 | 2,365 (56.5%) |
| Symptoms Onset in days–Median (IQR) | 1,301 | 2 (1–3) |
| Prevalence–no. (%) | 4,183 | 733 (17.5%) |
| Ct Value of PCR positive cases–Median (IQR) | 530 | 22 (20–24.5) |
2 × 2 table showing the PCR and Antigen test results.
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| Antigen test positive | 602 | 30 | 632 |
| Antigen test negative | 131 | 3,420 | 3,551 |
| Total PCR results | 733 | 3,450 | Total cases: 4,183 |
Assessment of the diagnostic accuracy of the antigen test.
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| Prevalence | 17.5% | 16% | 18.7% | |
| Sensitivity | 82.1% | 79.2% | 84.8% | |
| Specificity | 99.1% | 98.8% | 99.4% | |
| Positive predicted value | 95.3% | 93.3% | 96.8% | |
| Negative predicted value | 96.3% | 95.6% | 96.9% | |
| Positive likelihood ratio | 94.4 | 66 | 135 | |
| Negative likelihood ratio | 0.18 | 0.154 | 0.211 | |
| False discovery rate | 3.8% | 3.3% | 4.4% | |
| Kappa coefficient | 85.9% | 83.8% | 88% |
The p-value of the kappa coefficient p < 0.001.
Figure 1Box plot of PCR Ct value and Antigen test result.
The effect of symptoms onset time and Ct values on the diagnostic performance.
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| 1 | Symptom onset within 7 days | 1,290 | 20% | 82.6% | 99.3% | 95.7% | 96.9% | 86.6% |
| 2 | Symptom onset within 5 days | 1,252 | 20% | 82.4% | 99.3% | 95.6% | 96.8% | 86.5% |
| 3 | Excluding cases with Ct ≥ 30 | 4,148 | 17% | 84.5% | 99.1% | 96.9% | 95.2% | 87.5% |
| 4 | Excluding cases with Ct > 24 | 3,996 | 14% | 87.9% | 99.1% | 98.1% | 94.2% | 89.5% |
| 5 | Symptom onset within 7 days and Excluding cases with Ct ≥ 30 | 1,274 | 20% | 86.3% | 99.3% | 96.8% | 96.8% | 89.3% |
| 6 | Symptom onset within 7 days and Excluding cases with Ct > 24 | 1,220 | 16% | 89.3% | 99.3% | 98% | 96.2% | 91.3% |
| 7 | Symptom onset within 5 days and Excluding cases with Ct > 30 | 1,236 | 19% | 86.3% | 99.3% | 96.8% | 96.7% | 89.3% |
| 8 | Symptom onset within 5 days and Excluding cases with Ct > 24 | 1,184 | 16% | 89.5% | 99.3% | 98% | 96% | 91.3% |