Literature DB >> 35083619

Automated 2D Slice-Based Skull Stripping Multi-View Ensemble Model on NFBS and IBSR Datasets.

Anam Fatima1,2, Tahir Mustafa Madni3,4, Fozia Anwar5, Uzair Iqbal Janjua2, Nasira Sultana6.   

Abstract

This study proposed and evaluated a two-dimensional (2D) slice-based multi-view U-Net (MVU-Net) architecture for skull stripping. The proposed model fused all three TI-weighted brain magnetic resonance imaging (MRI) views, i.e., axial, coronal, and sagittal. This 2D method performed equally well as a three-dimensional (3D) model of skull stripping. while using fewer computational resources. The predictions of all three views were fused linearly, producing a final brain mask with better accuracy and efficiency. Meanwhile, two publicly available datasets-the Internet Brain Segmentation Repository (IBSR) and Neurofeedback Skull-stripped (NFBS) repository-were trained and tested. The MVU-Net, U-Net, and skip connection U-Net (SCU-Net) architectures were then compared. For the IBSR dataset, compared to U-Net and SC-UNet, the MVU-Net architecture attained better mean dice score coefficient (DSC), sensitivity, and specificity, at 0.9184, 0.9397, and 0.9908, respectively. Similarly, the MVU-Net architecture achieved better mean DSC, sensitivity, and specificity, at 0.9681, 0.9763, and 0.9954, respectively, than the U-Net and SC-UNet for the NFBS dataset.
© 2022. The Author(s) under exclusive licence to Society for Imaging Informatics in Medicine.

Entities:  

Keywords:  Brain extraction; Conventional methods; Deep-learning methods; Internet Brain Segmentation Repository; Magnetic resonance imaging; Neurofeedback; Skull-stripped; Skull-stripping methods

Mesh:

Year:  2022        PMID: 35083619      PMCID: PMC8921359          DOI: 10.1007/s10278-021-00560-0

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  21 in total

1.  BEaST: brain extraction based on nonlocal segmentation technique.

Authors:  Simon F Eskildsen; Pierrick Coupé; Vladimir Fonov; José V Manjón; Kelvin K Leung; Nicolas Guizard; Shafik N Wassef; Lasse Riis Østergaard; D Louis Collins
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

2.  Skull stripping using graph cuts.

Authors:  Suresh A Sadananthan; Weili Zheng; Michael W L Chee; Vitali Zagorodnov
Journal:  Neuroimage       Date:  2009-09-02       Impact factor: 6.556

3.  QuickNAT: A fully convolutional network for quick and accurate segmentation of neuroanatomy.

Authors:  Abhijit Guha Roy; Sailesh Conjeti; Nassir Navab; Christian Wachinger
Journal:  Neuroimage       Date:  2018-11-29       Impact factor: 6.556

4.  State-of-the-Art Traditional to the Machine- and Deep-Learning-Based Skull Stripping Techniques, Models, and Algorithms.

Authors:  Anam Fatima; Ahmad Raza Shahid; Basit Raza; Tahir Mustafa Madni; Uzair Iqbal Janjua
Journal:  J Digit Imaging       Date:  2020-12       Impact factor: 4.056

Review 5.  An open, multi-vendor, multi-field-strength brain MR dataset and analysis of publicly available skull stripping methods agreement.

Authors:  Roberto Souza; Oeslle Lucena; Julia Garrafa; David Gobbi; Marina Saluzzi; Simone Appenzeller; Letícia Rittner; Richard Frayne; Roberto Lotufo
Journal:  Neuroimage       Date:  2017-08-12       Impact factor: 6.556

6.  AdaPT: An adaptive preterm segmentation algorithm for neonatal brain MRI.

Authors:  M Jorge Cardoso; Andrew Melbourne; Giles S Kendall; Marc Modat; Nicola J Robertson; Neil Marlow; Sebastien Ourselin
Journal:  Neuroimage       Date:  2012-08-14       Impact factor: 6.556

7.  Fully Automatic White Matter Hyperintensity Segmentation using U-net and Skip Connection.

Authors:  Yue Zhang; Jiong Wu; Wanli Chen; Yilong Liu; Junyan Lyu; Hongjian Shi; Yifan Chen; Ed X Wu; Xiaoying Tang
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2019-07

8.  Skull-Stripping of Glioblastoma MRI Scans Using 3D Deep Learning.

Authors:  Siddhesh P Thakur; Jimit Doshi; Sarthak Pati; Sung Min Ha; Chiharu Sako; Sanjay Talbar; Uday Kulkarni; Christos Davatzikos; Guray Erus; Spyridon Bakas
Journal:  Brainlesion       Date:  2020-05-19

Review 9.  MRI segmentation of the human brain: challenges, methods, and applications.

Authors:  Ivana Despotović; Bart Goossens; Wilfried Philips
Journal:  Comput Math Methods Med       Date:  2015-03-01       Impact factor: 2.238

10.  Reconstruction of white matter fibre tracts using diffusion kurtosis tensor imaging at 1.5T: Pre-surgical planning in patients with gliomas.

Authors:  Joao Leote; Rita G Nunes; Luis Cerqueira; Ricardo Loução; Hugo A Ferreira
Journal:  Eur J Radiol Open       Date:  2018-01-28
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