| Literature DB >> 35083619 |
Anam Fatima1,2, Tahir Mustafa Madni3,4, Fozia Anwar5, Uzair Iqbal Janjua2, Nasira Sultana6.
Abstract
This study proposed and evaluated a two-dimensional (2D) slice-based multi-view U-Net (MVU-Net) architecture for skull stripping. The proposed model fused all three TI-weighted brain magnetic resonance imaging (MRI) views, i.e., axial, coronal, and sagittal. This 2D method performed equally well as a three-dimensional (3D) model of skull stripping. while using fewer computational resources. The predictions of all three views were fused linearly, producing a final brain mask with better accuracy and efficiency. Meanwhile, two publicly available datasets-the Internet Brain Segmentation Repository (IBSR) and Neurofeedback Skull-stripped (NFBS) repository-were trained and tested. The MVU-Net, U-Net, and skip connection U-Net (SCU-Net) architectures were then compared. For the IBSR dataset, compared to U-Net and SC-UNet, the MVU-Net architecture attained better mean dice score coefficient (DSC), sensitivity, and specificity, at 0.9184, 0.9397, and 0.9908, respectively. Similarly, the MVU-Net architecture achieved better mean DSC, sensitivity, and specificity, at 0.9681, 0.9763, and 0.9954, respectively, than the U-Net and SC-UNet for the NFBS dataset.Entities:
Keywords: Brain extraction; Conventional methods; Deep-learning methods; Internet Brain Segmentation Repository; Magnetic resonance imaging; Neurofeedback; Skull-stripped; Skull-stripping methods
Mesh:
Year: 2022 PMID: 35083619 PMCID: PMC8921359 DOI: 10.1007/s10278-021-00560-0
Source DB: PubMed Journal: J Digit Imaging ISSN: 0897-1889 Impact factor: 4.056