| Literature DB >> 35059561 |
Wadim L Matochko1, Constantin Nelep2, Weihsu C Chen1, Stephanie Grauer1, Karyn McFadden1, Vicki Wilson1, Kirill Oxenoid1.
Abstract
The most robust strategy in antibody discovery is the use of immunized animals and the ability to isolate and immortalize immune B-cells to hybridoma for further interrogation. However, capturing the full repertoire of an immunized animal is labor intensive, time consuming and limited in throughput. Therefore, techniques to directly mine the antibody repertoire of primary B-cells are of great importance in antibody discovery. In the current study, we present a method to isolate individual antigen-specific primary B-cells using the CellCellector™ single-cell isolation platform from XenoMouse® (XM) immunized with a recombinant therapeutic protein, EGFR. We screened a subset of CD138+ B-cells and identified 238 potential EGFR-specific B-cells from 1189 antibody-secreting cells (ASCs) and isolated 94 by CellCellector. We identified a diverse set of heavy chain complementarity-determining region sequences and cloned and expressed 20 into a standard human immunoglobulin G1 antibody format. We further characterized and identified 13 recombinant antibodies that engage soluble and native forms of EGFR. By extrapolating the method to all 400 000 CD138+ B-cells extracted from one EGFR immunized XM, a potential 1196 unique EGFR-specific antibodies could be discovered. CellCelector allows for interrogating the B-cell pool directly and isolating B-cells specific to the therapeutic target of interest. Furthermore, antibody sequences recovered from isolated B-cells engage the native and recombinant target, demonstrating the CellCellector can serve as a platform in antibody discovery.Entities:
Keywords: ASC; B-cell; CellCelector™; antibody discovery; antibody generation
Year: 2022 PMID: 35059561 PMCID: PMC8764991 DOI: 10.1093/abt/tbab030
Source DB: PubMed Journal: Antib Ther ISSN: 2516-4236
Figure 1Representative fluorescent and brightfield images of an EGFR+ ASC to be picked from a nanowell and deposited into well-B1 of a 96-well PCR plate containing lysis buffer for molecular recovery. Images are centered and a green outline is auto-assigned to the well and B-cell to be picked. (A) Image of fluorescence specific 647 nm emission (RED); it is observed two neighboring wells contain ASCs. (B) Image of fluorescence specific 488 nm emission (GREEN); it is observed one neighboring well contains an ASC specific to EGFR. (C) Overlay of images from both 647 and 488 nm channels and (D) brightfield image used to pick an EGFR+ ASC. Brightfield images (E) before and (F) after an EGFR+ ASC is picked from nanowell. Brightfield images demonstrate all contents within the nanowell are picked. Images C-F for all 94 EGFR+ ASC clones picked can be found in Supporting Figs 2 and 3.
Figure 2Sequence characterization of single-cell, recovered, EGFR-specific clones chosen for cloning. (A) Table of Variable Heavy (VH) and Light (VL) germline usage for each clone. (B) VH CDR dendrogram illustrating the sequence diversity of the 20 clones. The yellow box indicates a chosen maximum distance between two antibodies to allow grouping and is based on a calculation of similarity equal to the number of mismatches divided by the sequence length. The tree length is on the x-axis and antibodies with a distance less than 0.1 from each other were grouped together resulting in 16 separate antibody clades.
Figure 3Characterization of 20 expressed clones. (A) Binding of antibodies to EGFR expressing CHO cells by flow cytometry. EGFR binding was determined using the geomean of antibodies to EGFR-CHO over parental CHO cells. Antibodies were tested at 50 nM in triplicate. (B) Affinity of antibodies to soluble EGFR determined using BLI. Antibodies were captured to an anti-human Fc antibody loaded on streptavidin biosensors and binding measured to EGFR titrated from 1.56 to 100 nM. Antibodies binding to cells >3.5-fold also bind to soluble EGFR. (C) Three representative sensorgrams of antibodies demonstrating high affinity (<1 nM), moderate affinity (1–10 nM), and no binding to soluble EGFR. All sensorgrams can be found in Supporting Fig. 5.