Literature DB >> 33775449

Animal Immunization, in Vitro Display Technologies, and Machine Learning for Antibody Discovery.

Andreas H Laustsen1, Victor Greiff2, Aneesh Karatt-Vellatt3, Serge Muyldermans4, Timothy P Jenkins5.   

Abstract

For years, a discussion has persevered on the benefits and drawbacks of antibody discovery using animal immunization versus in vitro selection from non-animal-derived recombinant repertoires using display technologies. While it has been argued that using recombinant display libraries can reduce animal consumption, we hold that the number of animals used in immunization campaigns is dwarfed by the number sacrificed during preclinical studies. Thus, improving quality control of antibodies before entering in vivo studies will have a larger impact on animal consumption. Both animal immunization and recombinant repertoires present unique advantages for discovering antibodies that are fit for purpose. Furthermore, we anticipate that machine learning will play a significant role within discovery workflows, refining current antibody discovery practices.
Copyright © 2021 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  animal immunization; antibody discovery; artificial intelligence; display technologies; machine learning; monoclonal antibodies

Mesh:

Substances:

Year:  2021        PMID: 33775449     DOI: 10.1016/j.tibtech.2021.03.003

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  9 in total

Review 1.  Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies.

Authors:  Rahmad Akbar; Habib Bashour; Puneet Rawat; Philippe A Robert; Eva Smorodina; Tudor-Stefan Cotet; Karine Flem-Karlsen; Robert Frank; Brij Bhushan Mehta; Mai Ha Vu; Talip Zengin; Jose Gutierrez-Marcos; Fridtjof Lund-Johansen; Jan Terje Andersen; Victor Greiff
Journal:  MAbs       Date:  2022 Jan-Dec       Impact factor: 5.857

2.  Generation and diversification of recombinant monoclonal antibodies.

Authors:  Keith F DeLuca; Jeanne E Mick; Amy H Ide; Wanessa C Lima; Lori Sherman; Kristin L Schaller; Steven M Anderson; Ning Zhao; Timothy J Stasevich; Dileep Varma; Jakob Nilsson; Jennifer G DeLuca
Journal:  Elife       Date:  2021-12-31       Impact factor: 8.140

Review 3.  Viro-antibody therapy: engineering oncolytic viruses for genetic delivery of diverse antibody-based biotherapeutics.

Authors:  Roland E Kontermann; Guy Ungerechts; Dirk M Nettelbeck
Journal:  MAbs       Date:  2021 Jan-Dec       Impact factor: 5.857

4.  In silico proof of principle of machine learning-based antibody design at unconstrained scale.

Authors:  Rahmad Akbar; Philippe A Robert; Cédric R Weber; Michael Widrich; Robert Frank; Milena Pavlović; Lonneke Scheffer; Maria Chernigovskaya; Igor Snapkov; Andrei Slabodkin; Brij Bhushan Mehta; Enkelejda Miho; Fridtjof Lund-Johansen; Jan Terje Andersen; Sepp Hochreiter; Ingrid Hobæk Haff; Günter Klambauer; Geir Kjetil Sandve; Victor Greiff
Journal:  MAbs       Date:  2022 Jan-Dec       Impact factor: 5.857

5.  Phage Display-Derived Monoclonal Antibodies Against Internalins A and B Allow Specific Detection of Listeria monocytogenes.

Authors:  Gustavo Marçal Schmidt Garcia Moreira; Sabine Gronow; Stefan Dübel; Marcelo Mendonça; Ângela Nunes Moreira; Fabricio Rochedo Conceição; Michael Hust
Journal:  Front Public Health       Date:  2022-03-15

Review 6.  Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery.

Authors:  Wiktoria Wilman; Sonia Wróbel; Weronika Bielska; Piotr Deszynski; Paweł Dudzic; Igor Jaszczyszyn; Jędrzej Kaniewski; Jakub Młokosiewicz; Anahita Rouyan; Tadeusz Satława; Sandeep Kumar; Victor Greiff; Konrad Krawczyk
Journal:  Brief Bioinform       Date:  2022-07-18       Impact factor: 13.994

7.  PDL1Binder: Identifying programmed cell death ligand 1 binding peptides by incorporating next-generation phage display data and different peptide descriptors.

Authors:  Bifang He; Bowen Li; Xue Chen; Qianyue Zhang; Chunying Lu; Shanshan Yang; Jinjin Long; Lin Ning; Heng Chen; Jian Huang
Journal:  Front Microbiol       Date:  2022-07-15       Impact factor: 6.064

Review 8.  Antibodies as Snakebite Antivenoms: Past and Future.

Authors:  Wilmar Dias da Silva; Sonia A De Andrade; Ângela Alice Amadeu Megale; Daniel Alexandre De Souza; Osvaldo Augusto Sant'Anna; Fábio Carlos Magnoli; Felipe Raimondi Guidolin; Kemily Stephanie Godoi; Lucas Yuri Saladini; Patrick Jack Spencer; Fernanda Calheta Vieira Portaro
Journal:  Toxins (Basel)       Date:  2022-09-01       Impact factor: 5.075

9.  CellCelector™ as a platform in isolating primary B cells for antibody discovery.

Authors:  Wadim L Matochko; Constantin Nelep; Weihsu C Chen; Stephanie Grauer; Karyn McFadden; Vicki Wilson; Kirill Oxenoid
Journal:  Antib Ther       Date:  2022-01-04
  9 in total

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