| Literature DB >> 35048452 |
Jessica Goodman1, June Brand1, Gennady Laptev2, Stuart K J R Auld1.
Abstract
Populations experiencing varying levels of ionizing radiation provide an excellent opportunity to study the fundamental drivers of evolution. Radiation can cause mutations and thus supply genetic variation; it can also selectively remove individuals that are unable to cope with the physiological stresses associated with radiation exposure, or non-selectively cull swathes of the population, reducing genetic variation. Since the nuclear power plant explosion in 1986, the Chernobyl area has experienced a spatially heterogeneous exposure to varying levels of ionizing radiation. We sampled Daphnia pulex (a freshwater crustacean) from lakes across the Chernobyl area, genotyped them at ten microsatellite loci and also calculated the current radiation dose rates. We then investigated whether the pattern of genetic diversity was positively associated with radiation dose rates, consistent with radiation-mediated supply of de novo mutations, or negatively associated with radiation dose rates, as would be expected with strong radiation-mediated selection. We found that measures of genetic diversity, including expected heterozygosity and mean allelic richness (an unbiased indicator of diversity), were significantly higher in lakes that experienced the highest radiation dose rates. This suggests that mutation outweighs selection as the key evolutionary force in populations exposed to high radiation dose rates. We also found significant but weak population structure, indicative of low genetic drift and clear evidence for isolation-by-distance between populations. This further suggests that gene flow between nearby populations is eroding population structure and that mutational input in high radiation lakes could, ultimately, supply genetic variation to lower radiation sites.Entities:
Keywords: evolution; ionizing radiation; microsatellites; population structure
Mesh:
Year: 2022 PMID: 35048452 PMCID: PMC9303301 DOI: 10.1111/jeb.13983
Source DB: PubMed Journal: J Evol Biol ISSN: 1010-061X Impact factor: 2.516
Analysis of molecular variance (AMOVA) assessing the partitioning of genetic variation
| Source of variation |
| Sum of squares | Variance | % total |
|
|---|---|---|---|---|---|
| Between populations | 6 | 275.76 | 0.70 | 12.52 |
|
| Within populations | 197 | 1053.84 | 0.47 | 8.37 |
|
| Within samples | 204 | 900.78 | 4.42 | 79.11 |
|
| Total | 407 | 2230.38 | 5.58 | 100 |
Significant values, resulting from a randomization test of 999 samples, are highlighted in bold.
Estimates of genetic diversity among seven Daphnia pulex populations at 10 microsatellite loci across Chernobyl
| Lake | Estimated lake area | Sampling date | Coord N | Coord E | Upper dose estimate | n | MLG | HE | HO | A | PA | MAR |
|
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vediltsy | 0.175 | 07.06.2016 | 51.4352 | 30.8385 | 0.10 | 27 | 27 | 0.46 | 0.53 | 30 | 1 | 2.66 | −0.14 |
|
| Smolin | 0.850 | 07.06.2016 | 51.2757 | 31.0333 | 0.12 | 28 | 28 | 0.5 | 0.45 | 36 | 2 | 3.16 | 0.1 | 0.02 |
| Yampol | 0.020 | 11.06.2016 | 51.2095 | 30.1767 | 0.20 | 28 | 28 | 0.45 | 0.39 | 30 | 2 | 2.67 | 0.14 |
|
| Glinka | 0.005 | 16.06.2016 | 51.2174 | 29.9371 | 1.17 | 28 | 28 | 0.44 | 0.31 | 29 | 1 | 2.62 | 0.3 | 0.06 |
| Buryakovka | 0.350 | 11.06.2016 | 51.3978 | 29.8931 | 1.77 | 28 | 28 | 0.47 | 0.33 | 32 | 0 | 2.85 | 0.3 |
|
| Krasnyansky | 0.066 | 13.06.2016 | 51.4429 | 30.0764 | 55.79 | 38 | 38 | 0.62 | 0.5 | 42 | 3 | 3.7 | 0.2 |
|
| Gluboke | 0.260 | 13.06.2016 | 51.4454 | 30.0653 | 181.15 | 28 | 27 | 0.6 | 0.66 | 43 | 4 | 3.68 | −0.11 | 0.02 |
Estimate lake area is in km2 and upper dose estimate is in µGy h−1.
A, number of alleles; HE, expected heterozygosity; HO, observed heterozygosity; MAR, mean allelic richness; MLG, multilocus genotypes; n, number of individuals; PA, number of private alleles; , Index of unbiased association (linkeage disequilibrium).
FIGURE 1The relationships between (a) mean allelic richness (b) expected heterozygosity and log10 dose rate. Points for panels A and B show the raw data, and the shaded area shows 95% confidence intervals from linear models. The R 2 and p‐values are shown for each model fit. (c) Within population structure F IS values for each population; 95% confidence intervals were computed using Monte Carlo simulations with 999 permutations. (d) Isolation‐by‐distance plot based upon a Monte Carlo simulation using 999 permutations to test between two matrices of pairwise Edward's genetic distances and Euclidean geographic distances. (e) Likelihood of correct assignment of individuals to lake population based on DAPC analysis
FIGURE 2DAPC of the multilocus microsatellite genotypes of 205 Daphnia magna from Chernobyl. (a) Plot of individuals in first two discriminant functions, where colours denote population ID. (b) Structure plot demonstrating population assignment