Literature DB >> 35033655

Harnessing plasmid replication mechanism to enable dynamic control of gene copy in bacteria.

Chenyi Li1, Yusong Zou1, Tian Jiang1, Jianli Zhang1, Yajun Yan2.   

Abstract

Dynamic regulation has been proved efficient in controlling gene expression at transcriptional, translational, and post-translational level. However, the dynamic regulation at gene replication level has been rarely explored so far. In this study, we established dynamic regulation at gene copy level through engineering controllable plasmid replication to dynamically control the gene expression. Prototypic genetic circuits with different control logic were applied to enable diversified dynamic behaviors of gene copy. To explore the applicability of this strategy, the dynamic gene copy control was employed in regulating the biosynthesis of p-coumaric acid, which resulted in an up to 78% increase in p-coumaric acid titer to 1.69 g/L in shake flasks. These results indicated the great potential of applying dynamic gene copy control for engineering biosynthesis of valuable compounds in metabolic engineering.
Copyright © 2022 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Controllable plasmid replication; Dynamic gene copy regulation; Dynamic pathway regulation; p-coumaric acid

Mesh:

Year:  2022        PMID: 35033655      PMCID: PMC8844098          DOI: 10.1016/j.ymben.2022.01.003

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  56 in total

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3.  Control of ColE1 DNA replication: the rop gene product negatively affects transcription from the replication primer promoter.

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Journal:  Proc Natl Acad Sci U S A       Date:  1982-10       Impact factor: 11.205

4.  Regulating malonyl-CoA metabolism via synthetic antisense RNAs for enhanced biosynthesis of natural products.

Authors:  Yaping Yang; Yuheng Lin; Lingyun Li; Robert J Linhardt; Yajun Yan
Journal:  Metab Eng       Date:  2015-04-09       Impact factor: 9.783

5.  Dynamic knockdown of E. coli central metabolism for redirecting fluxes of primary metabolites.

Authors:  Irene M Brockman; Kristala L J Prather
Journal:  Metab Eng       Date:  2014-12-24       Impact factor: 9.783

6.  The origin of replication of plasmid p15A and comparative studies on the nucleotide sequences around the origin of related plasmids.

Authors:  G Selzer; T Som; T Itoh; J Tomizawa
Journal:  Cell       Date:  1983-01       Impact factor: 41.582

7.  Novel biosensors based on flavonoid-responsive transcriptional regulators introduced into Escherichia coli.

Authors:  Solvej Siedler; Steen G Stahlhut; Sailesh Malla; Jérôme Maury; Ana Rute Neves
Journal:  Metab Eng       Date:  2013-11-01       Impact factor: 9.783

8.  Dynamic regulation of metabolic flux in engineered bacteria using a pathway-independent quorum-sensing circuit.

Authors:  Apoorv Gupta; Irene M Brockman Reizman; Christopher R Reisch; Kristala L J Prather
Journal:  Nat Biotechnol       Date:  2017-02-13       Impact factor: 54.908

9.  Diverse genetic error modes constrain large-scale bio-based production.

Authors:  Peter Rugbjerg; Nils Myling-Petersen; Andreas Porse; Kira Sarup-Lytzen; Morten O A Sommer
Journal:  Nat Commun       Date:  2018-02-20       Impact factor: 14.919

10.  RNA-guided gene activation by CRISPR-Cas9-based transcription factors.

Authors:  Pablo Perez-Pinera; D Dewran Kocak; Christopher M Vockley; Andrew F Adler; Ami M Kabadi; Lauren R Polstein; Pratiksha I Thakore; Katherine A Glass; David G Ousterout; Kam W Leong; Farshid Guilak; Gregory E Crawford; Timothy E Reddy; Charles A Gersbach
Journal:  Nat Methods       Date:  2013-07-25       Impact factor: 28.547

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  1 in total

Review 1.  Strategies for efficient production of recombinant proteins in Escherichia coli: alleviating the host burden and enhancing protein activity.

Authors:  Zi-Xu Zhang; Fang-Tong Nong; Yu-Zhou Wang; Chun-Xiao Yan; Yang Gu; Ping Song; Xiao-Man Sun
Journal:  Microb Cell Fact       Date:  2022-09-15       Impact factor: 6.352

  1 in total

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