Literature DB >> 35031913

Characterization of the genome and serine protease of a novel Bacillus subtilis isolate.

Zahoor Khan1,2, Maryam Shafique3, Faizan Saleem4,5, M Kamran Azim4, Nusrat Jabeen1, Sehar Afshan Naz2.   

Abstract

Current study was undertaken to carry out the genome-wide analysis of a multipotent isolate from desert soil which was previously identified as Bacillus tequilensis based on 16S rDNA analysis. This study also aims to characterize the serine protease and its biocatalytic potentials implying a combination of empirical and in-silico approaches. Next generation sequencing and short read de novo assembly generated the 4,235,084 bp draft genome of Bacillus sp. ZMS-2. Genome sequence analysis by digital DNA:DNA hybridization (dDDH) and average nucleotide identity classified the isolate as Bacillus subtilis ZMS-2 (Bioproject ID: PRJNA691551). Genome annotation revealed 10 antibiotic resistance genes, 8 antibiotic/antifungal gene clusters and 25 genes encoding proteases including subtilisin E, an extracellular alkaline protease. This extracellular protease (ZMS-2 protease) was produced using a statistically optimized medium, purified partially and characterized as alkaline serine protease. The partially purified ZMS-2 protease (780 U/mL) showed a 21 mm zone of casein hydrolysis and dehaired goat skin by pulling out hair with roots. These catalytic potentials of ZMS-2 protease were further confirmed using scanning electron microscopy of casein beads and dehaired skin. The study concludes B. subtilis ZMS-2 as a potent producer of a protease with promising potentials of commercial importance.
© 2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  Bacillus subtilis ZMS-2; Caseinolytic; Genome-wide; Keratinolytic; ZMS-2 protease

Mesh:

Substances:

Year:  2022        PMID: 35031913     DOI: 10.1007/s10482-021-01696-3

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  25 in total

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2.  Improved prediction of signal peptides: SignalP 3.0.

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Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

Review 3.  Proteases: History, discovery, and roles in health and disease.

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Journal:  J Biol Chem       Date:  2019-02-01       Impact factor: 5.157

4.  Overview and comparison of ortholog databases.

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Journal:  Drug Discov Today Technol       Date:  2006

5.  Purification and characterization of an extracellular protease from Xenorhabdus nematophila involved in insect immunosuppression.

Authors:  C Caldas; A Cherqui; A Pereira; N Simões
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

Review 6.  Protein precipitation techniques.

Authors:  Richard R Burgess
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

Review 7.  Bacteriocins of Bacillus thuringiensis can expand the potential of this bacterium to other areas rather than limit its use only as microbial insecticide.

Authors:  Norma M de la Fuente-Salcido; Luz Edith Casados-Vázquez; J Eleazar Barboza-Corona
Journal:  Can J Microbiol       Date:  2013-06-20       Impact factor: 2.419

Review 8.  Ecology and genomics of Bacillus subtilis.

Authors:  Ashlee M Earl; Richard Losick; Roberto Kolter
Journal:  Trends Microbiol       Date:  2008-05-28       Impact factor: 17.079

9.  FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool.

Authors:  Joseph Brown; Meg Pirrung; Lee Ann McCue
Journal:  Bioinformatics       Date:  2017-06-09       Impact factor: 6.937

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

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